| 1 | # -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 |
|---|
| 2 | # $Id$ |
|---|
| 3 | PortSystem 1.0 |
|---|
| 4 | name ndmanager-plugins |
|---|
| 5 | version 1.4.6 |
|---|
| 6 | revision 1 |
|---|
| 7 | categories science |
|---|
| 8 | platforms darwin |
|---|
| 9 | license GPL |
|---|
| 10 | maintainer gmail.com:FlorianFranzen |
|---|
| 11 | description A number of scripts and programs to automatically pre-process files recorded with various data acquisition systems. |
|---|
| 12 | long_description Functions are: file conversion (from vendor-specific, proprietary formats \ |
|---|
| 13 | to open formats used by e.g. Klusters and NeuroScope), channel resampling \ |
|---|
| 14 | and reordering, high-pass filtering and spike detection, waveform feature \ |
|---|
| 15 | extraction (PCA) for subsequent spike sorting, video transcoding and LED \ |
|---|
| 16 | tracking, etc. The NDManager Plugins are part of a larger data analysis \ |
|---|
| 17 | framework, see NDManager, Klusters, NeuroScope and FMAToolbox. |
|---|
| 18 | homepage http://ndmanager.sourceforge.net/ |
|---|
| 19 | master_sites sourceforge:project/ndmanager/${name}/${name}-${version} |
|---|
| 20 | distname ${name}_${version} |
|---|
| 21 | worksrcdir ${name} |
|---|
| 22 | checksums rmd160 26825396adf799b7555e29488b5c69d2d30bd0ab \ |
|---|
| 23 | sha256 f4ec4527dc6319a3c88bc7353a08dc4f68be6c39443f8506c0c03d0c941f67fa |
|---|
| 24 | patchfiles patch-makefile_no-python-plugins.diff \ |
|---|
| 25 | patch-src-process_extraspikes-strdupa.diff \ |
|---|
| 26 | patch-src-process_medianthreshold-strdupa.diff \ |
|---|
| 27 | patch-src-process_pca-makefile.diff \ |
|---|
| 28 | patch-scripts-colors.diff \ |
|---|
| 29 | patch-sed.diff |
|---|
| 30 | depends_build port:docbook-xsl \ |
|---|
| 31 | port:docbook-xml \ |
|---|
| 32 | port:libxslt |
|---|
| 33 | # Might also need: port:argp-standalone |
|---|
| 34 | depends_lib port:libsdl \ |
|---|
| 35 | port:libsamplerate \ |
|---|
| 36 | port:gsl |
|---|
| 37 | configure { |
|---|
| 38 | ui_warn "In case of failure, make sure your locate database is up to date, i.e. run: sudo /usr/libexec/locate.updatedb" |
|---|
| 39 | ui_warn "If xslproc throws errors, just rerunning the installation will also help, i.e. run: sudo port install ${name}" |
|---|
| 40 | |
|---|
| 41 | # Set install dir correctly |
|---|
| 42 | system "for file in \$(grep -rl 'INSTALLDIR =' ${worksrcpath}); do \ |
|---|
| 43 | sed -i '' 's;INSTALLDIR = /usr;INSTALLDIR = ${destroot}${prefix};' \$file; \ |
|---|
| 44 | done" |
|---|
| 45 | |
|---|
| 46 | # Set man base correctly |
|---|
| 47 | system "for file in \$(grep -rl 'MAN_BASE =' ${worksrcpath}); do \ |
|---|
| 48 | sed -i '' 's;MAN_BASE = \$(INSTALLDIR);MAN_BASE = \$(INSTALLDIR)/share;' \$file; \ |
|---|
| 49 | done" |
|---|
| 50 | system "for file in \$(grep -rl 'MANBASE =' ${worksrcpath}); do \ |
|---|
| 51 | sed -i '' 's;MANBASE = \$(INSTALLDIR);MANBASE = \$(INSTALLDIR)/share;' \$file; \ |
|---|
| 52 | done" |
|---|
| 53 | |
|---|
| 54 | # Set lib dir correctly |
|---|
| 55 | system "for file in \$(grep -rl 'LIBS' ${worksrcpath}); do \ |
|---|
| 56 | sed -i '' 's;-L/usr/lib;-L${prefix}/lib;' \$file; \ |
|---|
| 57 | done" |
|---|
| 58 | |
|---|
| 59 | # Set incs correctly |
|---|
| 60 | system "for file in \$(grep -rl 'INCS' ${worksrcpath}); do \ |
|---|
| 61 | sed -i '' 's;-I/usr/lib;-I${prefix}/include;' \$file; \ |
|---|
| 62 | done" |
|---|
| 63 | |
|---|
| 64 | # Remove weird html codes from xml and xsl |
|---|
| 65 | system "for file in \$(grep -rl ' ' ${worksrcpath}); do \ |
|---|
| 66 | sed -i '' 's/\\ /\\ /g' \$file; \ |
|---|
| 67 | done" |
|---|
| 68 | |
|---|
| 69 | # Removed 'extractled' since it can not be build for x64 |
|---|
| 70 | system "rm -rf ${worksrcpath}/src/process_extractleds" |
|---|
| 71 | |
|---|
| 72 | ui_warn "The following plugins are unbuildable and were deactivated: process_extractleds, ndm_checkconsistency and ndm_prepare." |
|---|
| 73 | } |
|---|
