| 1 | # -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 |
|---|
| 2 | # $Id$ |
|---|
| 3 | |
|---|
| 4 | PortSystem 1.0 |
|---|
| 5 | PortGroup python 1.0 |
|---|
| 6 | |
|---|
| 7 | name py-khmer |
|---|
| 8 | version 0.4 |
|---|
| 9 | categories python science |
|---|
| 10 | platforms darwin |
|---|
| 11 | license BSD |
|---|
| 12 | python.versions 26 27 |
|---|
| 13 | |
|---|
| 14 | if {${subport} != ${name}} { |
|---|
| 15 | depends_lib port:py${python.version}-screed |
|---|
| 16 | } |
|---|
| 17 | |
|---|
| 18 | homepage https://github.com/ged-lab/khmer |
|---|
| 19 | description khmer is a library and toolkit for doing k-mer-based dataset analysis and transformations. |
|---|
| 20 | long_description khmer is a library and toolkit for doing k-mer-based dataset analysis and transformations. Our focus in developing it has been on scaling assembly of metagenomes and mRNA. khmer can be used for a number of transformations, include inexact transformations (abundance filtering and error trimming) and exact transformations (graphsize filtering, to throw away disconnected reads\; and partitioning, to split reads into disjoint sets). |
|---|
| 21 | maintainers openmaintainer node99.org:sean |
|---|
| 22 | |
|---|
| 23 | fetch.type git |
|---|
| 24 | git.url https://github.com/ged-lab/khmer.git |
|---|
| 25 | build.dir ${worksrcpath}/python |
|---|
| 26 | configure.compiler clang |
|---|
| 27 | |
|---|
| 28 | pre-build { |
|---|
| 29 | system "cd ${worksrcpath}; make" |
|---|
| 30 | } |
|---|
