| 1 | # -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 |
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| 2 | # $Id$ |
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| 3 | |
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| 4 | PortSystem 1.0 |
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| 5 | PortGroup python 1.0 |
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| 6 | PortGroup github 1.0 |
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| 7 | |
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| 8 | github.setup ged-lab khmer 2012-assembly-artifacts |
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| 9 | name py-khmer |
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| 10 | categories python science |
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| 11 | platforms darwin |
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| 12 | license BSD |
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| 13 | python.versions 26 27 |
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| 14 | |
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| 15 | if {${subport} != ${name}} { |
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| 16 | depends_lib-append port:py${python.version}-screed |
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| 17 | } |
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| 18 | |
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| 19 | description khmer is a library and toolkit for doing k-mer-based dataset analysis and transformations. |
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| 20 | long_description khmer is a library and toolkit for doing k-mer-based dataset analysis and transformations. Our focus in developing it has been on scaling assembly of metagenomes and mRNA. khmer can be used for a number of transformations, include inexact transformations (abundance filtering and error trimming) and exact transformations (graphsize filtering, to throw away disconnected reads\; and partitioning, to split reads into disjoint sets). |
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| 21 | maintainers node99.org:sean openmaintainer |
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| 22 | |
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| 23 | checksums rmd160 ea6a584340cf04a535cf548e207d766c3d3e7866 \ |
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| 24 | sha256 acacdb6257da593a7490fdad496d6c07438effd59b68709860c1fe10c3e1039c |
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| 25 | build.dir ${worksrcpath}/python |
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| 26 | |
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| 27 | pre-build { |
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| 28 | system -W ${worksrcpath}/lib "make CXX=${configure.cxx}" |
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| 29 | } |
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