| 1 | # $Id$ |
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| 2 | |
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| 3 | PortSystem 1.0 |
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| 4 | |
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| 5 | name bedtools |
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| 6 | version 2.17.0 |
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| 7 | revision 1 |
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| 8 | categories science |
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| 9 | maintainers gmail.com:vandervelde.ag openmaintainer |
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| 10 | license GPL-2 |
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| 11 | description Utilities to perform basic operations on BED files |
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| 12 | long_description The BEDTools utilities allow one to address common genomics \ |
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| 13 | tasks such as finding feature overlaps and computing coverage. \ |
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| 14 | The utilities are largely based on four widely-used file formats: \ |
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| 15 | BED, GFF/GTF, VCF, and SAM/BAM. |
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| 16 | homepage https://code.google.com/p/bedtools/ |
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| 17 | master_sites https://bedtools.googlecode.com/files/ |
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| 18 | platforms darwin |
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| 19 | depends_lib port:zlib |
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| 20 | distname BEDTools.v${version} |
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| 21 | worksrcdir bedtools-${version} |
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| 22 | checksums sha1 1b1de3c35394a423f9ad98a9957a8853b426a578 \ |
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| 23 | rmd160 dccc7dc02dd0519977e30f83a0d49c9f9b0e0ca9 \ |
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| 24 | sha256 6dcfacdcbccc968e872b81ba1f37a086b1bcc486571582ed595db717e924d0fe |
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| 25 | use_configure no |
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| 26 | configure.cflags-append -std=gnu89 |
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| 27 | build.args CC=${configure.cc} \ |
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| 28 | CFLAGS="-g -Wall ${configure.cflags} ${configure.cc_archflags}" |
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| 29 | use_parallel_build no |
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| 30 | set bedtools_destdir ${destroot}${prefix}/bin |
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| 31 | build.target all |
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| 32 | |
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| 33 | destroot { |
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| 34 | eval xinstall -m 755 [glob ${worksrcpath}/bin/*] ${bedtools_destdir}/ |
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| 35 | xinstall -d ${destroot}${prefix}/share/doc/${name} |
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| 36 | xinstall -d ${destroot}${prefix}/share/${name}/genomes |
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| 37 | xinstall -m 644 -W ${worksrcpath} \ |
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| 38 | LICENSE README.rst RELEASE_HISTORY \ |
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| 39 | ${destroot}${prefix}/share/doc/${name} |
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| 40 | eval xinstall -m 644 [glob ${worksrcpath}/genomes/*] ${destroot}${prefix}/share/${name}/genomes/ |
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| 41 | } |
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| 42 | |
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