Ticket #48515: main.log

File main.log, 550.3 KB (added by rkirian@…, 9 years ago)

log from sudo port -svtk install crystfel

Line 
1version:1
2:debug:main epoch: in tree: 0 installed: 0
3:debug:main pkgconfig 0.28_0 exists in the ports tree
4:debug:main pkgconfig 0.28_0  is the latest installed
5:debug:main pkgconfig 0.28_0  is active
6:debug:main Merging existing variants '' into variants
7:debug:main new fully merged portvariants:
8:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/pkgconfig
9:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
10:debug:main adding the default universal variant
11:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
12:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
13:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
14:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
15:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
16:debug:main No need to upgrade! pkgconfig 0.28_0 >= pkgconfig 0.28_0
17:debug:main epoch: in tree: 0 installed: 0
18:debug:main libiconv 1.14_0 exists in the ports tree
19:debug:main libiconv 1.14_0  is the latest installed
20:debug:main libiconv 1.14_0  is active
21:debug:main Merging existing variants '' into variants
22:debug:main new fully merged portvariants:
23:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv
24:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
25:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
26:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
27:debug:main universal variant already exists, so not adding the default one
28:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
29:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
30:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
31:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
32:debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0
33:debug:main epoch: in tree: 0 installed: 0
34:debug:main gsl 1.16_3 exists in the ports tree
35:debug:main gsl 1.16_3  is the latest installed
36:debug:main gsl 1.16_3  is active
37:debug:main Merging existing variants '' into variants
38:debug:main new fully merged portvariants:
39:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/gsl
40:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
41:debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
42:debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
43:debug:main adding the default universal variant
44:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
45:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
46:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
47:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
48:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
49:debug:main No need to upgrade! gsl 1.16_3 >= gsl 1.16_3
50:debug:main epoch: in tree: 0 installed: 0
51:debug:main fftw-3 3.3.4_1 exists in the ports tree
52:debug:main fftw-3 3.3.4_1  is the latest installed
53:debug:main fftw-3 3.3.4_1  is active
54:debug:main Merging existing variants '' into variants
55:debug:main new fully merged portvariants:
56:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/fftw-3
57:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
58:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
59:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
60:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
61:debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
62:debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
63:debug:main Sourcing PortGroup mpi 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl
64:debug:main compiler clang 602.0.53 not blacklisted because it doesn't match {clang <= 211.10.1}
65:debug:main universal variant already exists, so not adding the default one
66:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
67:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
68:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
69:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
70:debug:main No need to upgrade! fftw-3 3.3.4_1 >= fftw-3 3.3.4_1
71:debug:main epoch: in tree: 2 installed: 2
72:debug:main gdk-pixbuf2 2.31.5_0 exists in the ports tree
73:debug:main gdk-pixbuf2 2.31.5_0 +x11 is the latest installed
74:debug:main gdk-pixbuf2 2.31.5_0 +x11 is active
75:debug:main Merging existing variants '+x11' into variants
76:debug:main new fully merged portvariants: x11 +
77:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/graphics/gdk-pixbuf2
78:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
79:debug:main Sourcing PortGroup gobject_introspection 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/gobject_introspection-1.0.tcl
80:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
81:debug:main adding the default universal variant
82:debug:main Executing variant x11 provides x11
83:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
84:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
85:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
86:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
87:debug:main No need to upgrade! gdk-pixbuf2 2.31.5_0 >= gdk-pixbuf2 2.31.5_0
88:debug:main epoch: in tree: 0 installed: 0
89:debug:main glib2 2.44.1_1 exists in the ports tree
90:debug:main glib2 2.44.1_1  is the latest installed
91:debug:main glib2 2.44.1_1  is active
92:debug:main Merging existing variants '' into variants
93:debug:main new fully merged portvariants:
94:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/glib2
95:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
96:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
97:debug:main Sourcing PortGroup conflicts_build 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/conflicts_build-1.0.tcl
98:debug:main compiler clang 602.0.53 not blacklisted because it doesn't match {clang < 318}
99:debug:main adding the default universal variant
100:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
101:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
102:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
103:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
104:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
105:debug:main No need to upgrade! glib2 2.44.1_1 >= glib2 2.44.1_1
106:debug:main epoch: in tree: 2 installed: 2
107:debug:main gettext 0.19.5_0 exists in the ports tree
108:debug:main gettext 0.19.5_0  is the latest installed
109:debug:main gettext 0.19.5_0  is active
110:debug:main Merging existing variants '' into variants
111:debug:main new fully merged portvariants:
112:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext
113:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
114:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
115:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
116:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
117:debug:main compiler clang 602.0.53 not blacklisted because it doesn't match {clang < 211.10.1}
118:debug:main universal variant already exists, so not adding the default one
119:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
120:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
121:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
122:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
123:debug:main No need to upgrade! gettext 0.19.5_0 >= gettext 0.19.5_0
124:debug:main epoch: in tree: 0 installed: 0
125:debug:main expat 2.1.0_0 exists in the ports tree
126:debug:main expat 2.1.0_0  is the latest installed
127:debug:main expat 2.1.0_0  is active
128:debug:main Merging existing variants '' into variants
129:debug:main new fully merged portvariants:
130:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat
131:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
132:debug:main adding the default universal variant
133:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
134:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
135:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
136:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
137:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
138:debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0
139:debug:main epoch: in tree: 0 installed: 0
140:debug:main ncurses 5.9_2 exists in the ports tree
141:debug:main ncurses 5.9_2  is the latest installed
142:debug:main ncurses 5.9_2  is active
143:debug:main Merging existing variants '' into variants
144:debug:main new fully merged portvariants:
145:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses
146:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
147:debug:main adding the default universal variant
148:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
149:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
150:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
151:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
152:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
153:debug:main No need to upgrade! ncurses 5.9_2 >= ncurses 5.9_2
154:debug:main epoch: in tree: 0 installed: 0
155:debug:main zlib 1.2.8_0 exists in the ports tree
156:debug:main zlib 1.2.8_0  is the latest installed
157:debug:main zlib 1.2.8_0  is active
158:debug:main Merging existing variants '' into variants
159:debug:main new fully merged portvariants:
160:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib
161:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
162:debug:main Sourcing PortGroup xcodeversion 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl
163:debug:main adding the default universal variant
164:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
165:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
166:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
167:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
168:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
169:debug:main No need to upgrade! zlib 1.2.8_0 >= zlib 1.2.8_0
170:debug:main epoch: in tree: 0 installed: 0
171:debug:main libffi 3.2.1_0 exists in the ports tree
172:debug:main libffi 3.2.1_0  is the latest installed
173:debug:main libffi 3.2.1_0  is active
174:debug:main Merging existing variants '' into variants
175:debug:main new fully merged portvariants:
176:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libffi
177:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
178:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
179:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
180:debug:main universal variant already exists, so not adding the default one
181:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
182:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
183:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
184:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
185:debug:main No need to upgrade! libffi 3.2.1_0 >= libffi 3.2.1_0
186:debug:main epoch: in tree: 0 installed: 0
187:debug:main shared-mime-info 1.4_0 exists in the ports tree
188:debug:main shared-mime-info 1.4_0  is the latest installed
189:debug:main shared-mime-info 1.4_0  is active
190:debug:main Merging existing variants '' into variants
191:debug:main new fully merged portvariants:
192:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/shared-mime-info
193:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
194:debug:main adding the default universal variant
195:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
196:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
197:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
198:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
199:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
200:debug:main No need to upgrade! shared-mime-info 1.4_0 >= shared-mime-info 1.4_0
201:debug:main epoch: in tree: 0 installed: 0
202:debug:main libxml2 2.9.2_2 exists in the ports tree
203:debug:main libxml2 2.9.2_2  is the latest installed
204:debug:main libxml2 2.9.2_2  is active
205:debug:main Merging existing variants '' into variants
206:debug:main new fully merged portvariants:
207:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libxml2
208:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
209:debug:main adding the default universal variant
210:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
211:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
212:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
213:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
214:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
215:debug:main No need to upgrade! libxml2 2.9.2_2 >= libxml2 2.9.2_2
216:debug:main epoch: in tree: 0 installed: 0
217:debug:main xz 5.2.1_0 exists in the ports tree
218:debug:main xz 5.2.1_0  is the latest installed
219:debug:main xz 5.2.1_0  is active
220:debug:main Merging existing variants '' into variants
221:debug:main new fully merged portvariants:
222:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/xz
223:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
224:debug:main adding the default universal variant
225:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
226:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
227:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
228:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
229:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
230:debug:main No need to upgrade! xz 5.2.1_0 >= xz 5.2.1_0
231:debug:main epoch: in tree: 0 installed: 0
232:debug:main libpng 1.6.18_0 exists in the ports tree
233:debug:main libpng 1.6.18_0  is the latest installed
234:debug:main libpng 1.6.18_0  is active
235:debug:main Merging existing variants '' into variants
236:debug:main new fully merged portvariants:
237:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/graphics/libpng
238:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
239:debug:main adding the default universal variant
240:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
241:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
242:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
243:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
244:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
245:debug:main No need to upgrade! libpng 1.6.18_0 >= libpng 1.6.18_0
246:debug:main epoch: in tree: 0 installed: 0
247:debug:main jasper 1.900.1_10 exists in the ports tree
248:debug:main jasper 1.900.1_10  is the latest installed
249:debug:main jasper 1.900.1_10  is active
250:debug:main Merging existing variants '' into variants
251:debug:main new fully merged portvariants:
252:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/graphics/jasper
253:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
254:debug:main adding the default universal variant
255:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
256:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
257:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
258:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
259:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
260:debug:main No need to upgrade! jasper 1.900.1_10 >= jasper 1.900.1_10
261:debug:main epoch: in tree: 0 installed: 0
262:debug:main jpeg 9a_1 exists in the ports tree
263:debug:main jpeg 9a_1  is the latest installed
264:debug:main jpeg 9a_1  is active
265:debug:main Merging existing variants '' into variants
266:debug:main new fully merged portvariants:
267:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/graphics/jpeg
268:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
269:debug:main adding the default universal variant
270:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
271:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
272:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
273:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
274:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
275:debug:main No need to upgrade! jpeg 9a_1 >= jpeg 9a_1
276:debug:main epoch: in tree: 0 installed: 0
277:debug:main tiff 4.0.4_1 exists in the ports tree
278:debug:main tiff 4.0.4_1  is the latest installed
279:debug:main tiff 4.0.4_1  is active
280:debug:main Merging existing variants '' into variants
281:debug:main new fully merged portvariants:
282:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/graphics/tiff
283:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
284:debug:main Sourcing PortGroup xcodeversion 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl
285:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
286:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
287:debug:main universal variant already exists, so not adding the default one
288:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
289:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
290:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
291:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
292:debug:main No need to upgrade! tiff 4.0.4_1 >= tiff 4.0.4_1
293:debug:main epoch: in tree: 0 installed: 0
294:debug:main gobject-introspection 1.44.0_0 exists in the ports tree
295:debug:main gobject-introspection 1.44.0_0  is the latest installed
296:debug:main gobject-introspection 1.44.0_0  is active
297:debug:main Merging existing variants '' into variants
298:debug:main new fully merged portvariants:
299:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/gnome/gobject-introspection
300:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
301:debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
302:debug:main python27 is installed with the following variants:
303:debug:main   required: ucs4, forbidden:
304:debug:main   rejected, because required variant ucs4 is missing
305:debug:main adding the default universal variant
306:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
307:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
308:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
309:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
310:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
311:debug:main No need to upgrade! gobject-introspection 1.44.0_0 >= gobject-introspection 1.44.0_0
312:debug:main epoch: in tree: 0 installed: 0
313:debug:main cairo 1.14.2_1 exists in the ports tree
314:debug:main cairo 1.14.2_1 +quartz+x11 is the latest installed
315:debug:main cairo 1.14.2_1 +quartz+x11 is active
316:debug:main Merging existing variants '+quartz+x11' into variants
317:debug:main new fully merged portvariants: x11 + quartz +
318:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/graphics/cairo
319:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
320:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
321:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
322:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
323:debug:main Sourcing PortGroup xcodeversion 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl
324:debug:main compiler clang 602.0.53 not blacklisted because it doesn't match {clang < 318.0.61}
325:debug:main universal variant already exists, so not adding the default one
326:debug:main Executing variant quartz provides quartz
327:debug:main Executing variant x11 provides x11
328:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
329:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
330:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
331:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
332:debug:main No need to upgrade! cairo 1.14.2_1 >= cairo 1.14.2_1
333:debug:main epoch: in tree: 0 installed: 0
334:debug:main libpixman 0.32.6_0 exists in the ports tree
335:debug:main libpixman 0.32.6_0  is the latest installed
336:debug:main libpixman 0.32.6_0  is active
337:debug:main Merging existing variants '' into variants
338:debug:main new fully merged portvariants:
339:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/graphics/libpixman
340:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
341:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
342:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
343:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
344:debug:main compiler clang 602.0.53 not blacklisted because it doesn't match {clang < 211.10.1}
345:debug:main universal variant already exists, so not adding the default one
346:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
347:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
348:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
349:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
350:debug:main No need to upgrade! libpixman 0.32.6_0 >= libpixman 0.32.6_0
351:debug:main epoch: in tree: 0 installed: 0
352:debug:main fontconfig 2.11.1_0 exists in the ports tree
353:debug:main fontconfig 2.11.1_0  is the latest installed
354:debug:main fontconfig 2.11.1_0  is active
355:debug:main Merging existing variants '' into variants
356:debug:main new fully merged portvariants:
357:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/graphics/fontconfig
358:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
359:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
360:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
361:debug:main universal variant already exists, so not adding the default one
362:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
363:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
364:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
365:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
366:debug:main No need to upgrade! fontconfig 2.11.1_0 >= fontconfig 2.11.1_0
367:debug:main epoch: in tree: 0 installed: 0
368:debug:main freetype 2.6_0 exists in the ports tree
369:debug:main freetype 2.6_0  is the latest installed
370:debug:main freetype 2.6_0  is active
371:debug:main Merging existing variants '' into variants
372:debug:main new fully merged portvariants:
373:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/print/freetype
374:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
375:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
376:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
377:debug:main universal variant already exists, so not adding the default one
378:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
379:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
380:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
381:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
382:debug:main No need to upgrade! freetype 2.6_0 >= freetype 2.6_0
383:debug:main epoch: in tree: 0 installed: 0
384:debug:main bzip2 1.0.6_0 exists in the ports tree
385:debug:main bzip2 1.0.6_0  is the latest installed
386:debug:main bzip2 1.0.6_0  is active
387:debug:main Merging existing variants '' into variants
388:debug:main new fully merged portvariants:
389:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/bzip2
390:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
391:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
392:debug:main universal variant already exists, so not adding the default one
393:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
394:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
395:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
396:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
397:debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0
398:debug:main epoch: in tree: 0 installed: 0
399:debug:main xrender 0.9.8_0 exists in the ports tree
400:debug:main xrender 0.9.8_0  is the latest installed
401:debug:main xrender 0.9.8_0  is active
402:debug:main Merging existing variants '' into variants
403:debug:main new fully merged portvariants:
404:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xrender
405:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
406:debug:main adding the default universal variant
407:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
408:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
409:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
410:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
411:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
412:debug:main No need to upgrade! xrender 0.9.8_0 >= xrender 0.9.8_0
413:debug:main epoch: in tree: 0 installed: 0
414:debug:main xorg-libX11 1.6.3_0 exists in the ports tree
415:debug:main xorg-libX11 1.6.3_0  is the latest installed
416:debug:main xorg-libX11 1.6.3_0  is active
417:debug:main Merging existing variants '' into variants
418:debug:main new fully merged portvariants:
419:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libX11
420:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
421:debug:main adding the default universal variant
422:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
423:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
424:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
425:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
426:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
427:debug:main No need to upgrade! xorg-libX11 1.6.3_0 >= xorg-libX11 1.6.3_0
428:debug:main epoch: in tree: 0 installed: 0
429:debug:main xorg-libXdmcp 1.1.2_0 exists in the ports tree
430:debug:main xorg-libXdmcp 1.1.2_0  is the latest installed
431:debug:main xorg-libXdmcp 1.1.2_0  is active
432:debug:main Merging existing variants '' into variants
433:debug:main new fully merged portvariants:
434:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXdmcp
435:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
436:debug:main adding the default universal variant
437:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
438:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
439:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
440:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
441:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
442:debug:main No need to upgrade! xorg-libXdmcp 1.1.2_0 >= xorg-libXdmcp 1.1.2_0
443:debug:main epoch: in tree: 0 installed: 0
444:debug:main xorg-libXau 1.0.8_0 exists in the ports tree
445:debug:main xorg-libXau 1.0.8_0  is the latest installed
446:debug:main xorg-libXau 1.0.8_0  is active
447:debug:main Merging existing variants '' into variants
448:debug:main new fully merged portvariants:
449:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXau
450:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
451:debug:main adding the default universal variant
452:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
453:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
454:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
455:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
456:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
457:debug:main No need to upgrade! xorg-libXau 1.0.8_0 >= xorg-libXau 1.0.8_0
458:debug:main epoch: in tree: 0 installed: 0
459:debug:main xorg-xproto 7.0.27_1 exists in the ports tree
460:debug:main xorg-xproto 7.0.27_1  is the latest installed
461:debug:main xorg-xproto 7.0.27_1  is active
462:debug:main Merging existing variants '' into variants
463:debug:main new fully merged portvariants:
464:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xproto
465:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
466:debug:main only one arch supported, so not adding the default universal variant
467:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
468:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
469:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
470:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
471:debug:main No need to upgrade! xorg-xproto 7.0.27_1 >= xorg-xproto 7.0.27_1
472:debug:main epoch: in tree: 0 installed: 0
473:debug:main xorg-libxcb 1.11_1 exists in the ports tree
474:debug:main xorg-libxcb 1.11_1 +python27 is the latest installed
475:debug:main xorg-libxcb 1.11_1 +python27 is active
476:debug:main Merging existing variants '+python27' into variants
477:debug:main new fully merged portvariants: python27 +
478:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libxcb
479:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
480:debug:main adding the default universal variant
481:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
482:debug:main Executing variant python27 provides python27
483:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
484:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
485:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
486:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
487:debug:main No need to upgrade! xorg-libxcb 1.11_1 >= xorg-libxcb 1.11_1
488:debug:main epoch: in tree: 0 installed: 0
489:debug:main xorg-xcb-proto 1.11_1 exists in the ports tree
490:debug:main xorg-xcb-proto 1.11_1 +python27 is the latest installed
491:debug:main xorg-xcb-proto 1.11_1 +python27 is active
492:debug:main Merging existing variants '+python27' into variants
493:debug:main new fully merged portvariants: python27 +
494:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xcb-proto
495:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
496:debug:main only one arch supported, so not adding the default universal variant
497:debug:main Executing variant python27 provides python27
498:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
499:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
500:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
501:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
502:debug:main No need to upgrade! xorg-xcb-proto 1.11_1 >= xorg-xcb-proto 1.11_1
503:debug:main epoch: in tree: 2 installed: 2
504:debug:main python27 2.7.10_2 exists in the ports tree
505:debug:main python27 2.7.10_2  is the latest installed
506:debug:main python27 2.7.10_2  is active
507:debug:main Merging existing variants '' into variants
508:debug:main new fully merged portvariants:
509:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/python27
510:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
511:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
512:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
513:debug:main universal variant already exists, so not adding the default one
514:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
515:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
516:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
517:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
518:debug:main No need to upgrade! python27 2.7.10_2 >= python27 2.7.10_2
519:debug:main epoch: in tree: 1 installed: 1
520:debug:main openssl 1.0.2d_0 exists in the ports tree
521:debug:main openssl 1.0.2d_0  is the latest installed
522:debug:main openssl 1.0.2d_0  is active
523:debug:main Merging existing variants '' into variants
524:debug:main new fully merged portvariants:
525:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/openssl
526:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
527:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
528:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
529:debug:main universal variant already exists, so not adding the default one
530:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
531:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
532:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
533:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
534:debug:main No need to upgrade! openssl 1.0.2d_0 >= openssl 1.0.2d_0
535:debug:main epoch: in tree: 0 installed: 0
536:debug:main sqlite3 3.8.10.2_0 exists in the ports tree
537:debug:main sqlite3 3.8.10.2_0  is the latest installed
538:debug:main sqlite3 3.8.10.2_0  is active
539:debug:main Merging existing variants '' into variants
540:debug:main new fully merged portvariants:
541:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/sqlite3
542:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
543:debug:main adding the default universal variant
544:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
545:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
546:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
547:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
548:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
549:debug:main No need to upgrade! sqlite3 3.8.10.2_0 >= sqlite3 3.8.10.2_0
550:debug:main epoch: in tree: 20090923 installed: 20090923
551:debug:main libedit 20140620-3.1_0 exists in the ports tree
552:debug:main libedit 20140620-3.1_0  is the latest installed
553:debug:main libedit 20140620-3.1_0  is active
554:debug:main Merging existing variants '' into variants
555:debug:main new fully merged portvariants:
556:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libedit
557:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
558:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
559:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
560:debug:main universal variant already exists, so not adding the default one
561:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
562:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
563:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
564:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
565:debug:main No need to upgrade! libedit 20140620-3.1_0 >= libedit 20140620-3.1_0
566:debug:main epoch: in tree: 0 installed: 0
567:debug:main db48 4.8.30_4 exists in the ports tree
568:debug:main db48 4.8.30_4  is the latest installed
569:debug:main db48 4.8.30_4  is active
570:debug:main Merging existing variants '' into variants
571:debug:main new fully merged portvariants:
572:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/db48
573:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
574:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
575:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
576:debug:main universal variant already exists, so not adding the default one
577:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
578:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
579:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
580:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
581:debug:main No need to upgrade! db48 4.8.30_4 >= db48 4.8.30_4
582:debug:main epoch: in tree: 0 installed: 0
583:debug:main python_select 0.3_5 exists in the ports tree
584:debug:main python_select 0.3_5  is the latest installed
585:debug:main python_select 0.3_5  is active
586:debug:main Merging existing variants '' into variants
587:debug:main new fully merged portvariants:
588:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/python_select
589:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
590:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
591:debug:main universal_variant is false, so not adding the default universal variant
592:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
593:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
594:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
595:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
596:debug:main No need to upgrade! python_select 0.3_5 >= python_select 0.3_5
597:debug:main epoch: in tree: 0 installed: 0
598:debug:main python2_select 0.0_1 exists in the ports tree
599:debug:main python2_select 0.0_1  is the latest installed
600:debug:main python2_select 0.0_1  is active
601:debug:main Merging existing variants '' into variants
602:debug:main new fully merged portvariants:
603:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/python2_select
604:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
605:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
606:debug:main universal_variant is false, so not adding the default universal variant
607:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
608:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
609:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
610:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
611:debug:main No need to upgrade! python2_select 0.0_1 >= python2_select 0.0_1
612:debug:main epoch: in tree: 0 installed: 0
613:debug:main xorg-libpthread-stubs 0.3_0 exists in the ports tree
614:debug:main xorg-libpthread-stubs 0.3_0  is the latest installed
615:debug:main xorg-libpthread-stubs 0.3_0  is active
616:debug:main Merging existing variants '' into variants
617:debug:main new fully merged portvariants:
618:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libpthread-stubs
619:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
620:debug:main only one arch supported, so not adding the default universal variant
621:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
622:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
623:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
624:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
625:debug:main No need to upgrade! xorg-libpthread-stubs 0.3_0 >= xorg-libpthread-stubs 0.3_0
626:debug:main epoch: in tree: 0 installed: 0
627:debug:main xorg-kbproto 1.0.6_0 exists in the ports tree
628:debug:main xorg-kbproto 1.0.6_0  is the latest installed
629:debug:main xorg-kbproto 1.0.6_0  is active
630:debug:main Merging existing variants '' into variants
631:debug:main new fully merged portvariants:
632:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-kbproto
633:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
634:debug:main only one arch supported, so not adding the default universal variant
635:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
636:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
637:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
638:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
639:debug:main No need to upgrade! xorg-kbproto 1.0.6_0 >= xorg-kbproto 1.0.6_0
640:debug:main epoch: in tree: 0 installed: 0
641:debug:main xorg-renderproto 0.11.1_0 exists in the ports tree
642:debug:main xorg-renderproto 0.11.1_0  is the latest installed
643:debug:main xorg-renderproto 0.11.1_0  is active
644:debug:main Merging existing variants '' into variants
645:debug:main new fully merged portvariants:
646:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-renderproto
647:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
648:debug:main only one arch supported, so not adding the default universal variant
649:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
650:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
651:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
652:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
653:debug:main No need to upgrade! xorg-renderproto 0.11.1_0 >= xorg-renderproto 0.11.1_0
654:debug:main epoch: in tree: 0 installed: 0
655:debug:main xorg-libXext 1.3.3_0 exists in the ports tree
656:debug:main xorg-libXext 1.3.3_0  is the latest installed
657:debug:main xorg-libXext 1.3.3_0  is active
658:debug:main Merging existing variants '' into variants
659:debug:main new fully merged portvariants:
660:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXext
661:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
662:debug:main adding the default universal variant
663:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
664:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
665:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
666:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
667:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
668:debug:main No need to upgrade! xorg-libXext 1.3.3_0 >= xorg-libXext 1.3.3_0
669:debug:main epoch: in tree: 0 installed: 0
670:debug:main xorg-xextproto 7.3.0_0 exists in the ports tree
671:debug:main xorg-xextproto 7.3.0_0  is the latest installed
672:debug:main xorg-xextproto 7.3.0_0  is active
673:debug:main Merging existing variants '' into variants
674:debug:main new fully merged portvariants:
675:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xextproto
676:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
677:debug:main only one arch supported, so not adding the default universal variant
678:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
679:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
680:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
681:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
682:debug:main No need to upgrade! xorg-xextproto 7.3.0_0 >= xorg-xextproto 7.3.0_0
683:debug:main epoch: in tree: 0 installed: 0
684:debug:main xorg-xcb-util 0.4.0_0 exists in the ports tree
685:debug:main xorg-xcb-util 0.4.0_0  is the latest installed
686:debug:main xorg-xcb-util 0.4.0_0  is active
687:debug:main Merging existing variants '' into variants
688:debug:main new fully merged portvariants:
689:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xcb-util
690:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
691:debug:main adding the default universal variant
692:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
693:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
694:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
695:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
696:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
697:debug:main No need to upgrade! xorg-xcb-util 0.4.0_0 >= xorg-xcb-util 0.4.0_0
698:debug:main epoch: in tree: 0 installed: 0
699:debug:main py27-mako 1.0.1_0 exists in the ports tree
700:debug:main py27-mako 1.0.1_0  is the latest installed
701:debug:main py27-mako 1.0.1_0  is active
702:debug:main Merging existing variants '' into variants
703:debug:main new fully merged portvariants:
704:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-mako
705:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
706:debug:main Re-registering default for build.cmd
707:debug:main Re-registering default for destroot.cmd
708:debug:main Re-registering default for destroot.destdir
709:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
710:debug:main only one arch supported, so not adding the default universal variant
711:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
712:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
713:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
714:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
715:debug:main No need to upgrade! py27-mako 1.0.1_0 >= py27-mako 1.0.1_0
716:debug:main epoch: in tree: 0 installed: 0
717:debug:main py27-setuptools 18.0.1_0 exists in the ports tree
718:debug:main py27-setuptools 18.0.1_0  is the latest installed
719:debug:main py27-setuptools 18.0.1_0  is active
720:debug:main Merging existing variants '' into variants
721:debug:main new fully merged portvariants:
722:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-setuptools
723:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
724:debug:main Re-registering default for build.cmd
725:debug:main Re-registering default for destroot.cmd
726:debug:main Re-registering default for destroot.destdir
727:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
728:debug:main only one arch supported, so not adding the default universal variant
729:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
730:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
731:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
732:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
733:debug:main No need to upgrade! py27-setuptools 18.0.1_0 >= py27-setuptools 18.0.1_0
734:debug:main epoch: in tree: 0 installed: 0
735:debug:main py27-beaker 1.6.4_0 exists in the ports tree
736:debug:main py27-beaker 1.6.4_0  is the latest installed
737:debug:main py27-beaker 1.6.4_0  is active
738:debug:main Merging existing variants '' into variants
739:debug:main new fully merged portvariants:
740:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-beaker
741:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
742:debug:main Re-registering default for build.cmd
743:debug:main Re-registering default for destroot.cmd
744:debug:main Re-registering default for destroot.destdir
745:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
746:debug:main only one arch supported, so not adding the default universal variant
747:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
748:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
749:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
750:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
751:debug:main No need to upgrade! py27-beaker 1.6.4_0 >= py27-beaker 1.6.4_0
752:debug:main epoch: in tree: 0 installed: 0
753:debug:main py27-markupsafe 0.23_0 exists in the ports tree
754:debug:main py27-markupsafe 0.23_0  is the latest installed
755:debug:main py27-markupsafe 0.23_0  is active
756:debug:main Merging existing variants '' into variants
757:debug:main new fully merged portvariants:
758:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-markupsafe
759:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
760:debug:main Re-registering default for build.cmd
761:debug:main Re-registering default for destroot.cmd
762:debug:main Re-registering default for destroot.destdir
763:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
764:debug:main adding the default universal variant
765:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
766:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
767:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
768:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
769:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
770:debug:main No need to upgrade! py27-markupsafe 0.23_0 >= py27-markupsafe 0.23_0
771:debug:main epoch: in tree: 0 installed: 0
772:debug:main libtool 2.4.6_1 exists in the ports tree
773:debug:main libtool 2.4.6_1  is the latest installed
774:debug:main libtool 2.4.6_1  is active
775:debug:main Merging existing variants '' into variants
776:debug:main new fully merged portvariants:
777:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libtool
778:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
779:debug:main adding the default universal variant
780:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
781:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
782:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
783:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
784:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
785:debug:main No need to upgrade! libtool 2.4.6_1 >= libtool 2.4.6_1
786:debug:main epoch: in tree: 0 installed: 0
787:debug:main gtk2 2.24.28_0 exists in the ports tree
788:debug:main gtk2 2.24.28_0 +x11 is the latest installed
789:debug:main gtk2 2.24.28_0 +x11 is active
790:debug:main Merging existing variants '+x11' into variants
791:debug:main new fully merged portvariants: x11 +
792:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/gnome/gtk2
793:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
794:debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
795:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
796:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
797:debug:main Sourcing PortGroup xcodeversion 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl
798:debug:main universal variant already exists, so not adding the default one
799:debug:main Executing variant x11 provides x11
800:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
801:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
802:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
803:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
804:debug:main No need to upgrade! gtk2 2.24.28_0 >= gtk2 2.24.28_0
805:debug:main epoch: in tree: 2 installed: 2
806:debug:main atk 2.16.0_0 exists in the ports tree
807:debug:main atk 2.16.0_0  is the latest installed
808:debug:main atk 2.16.0_0  is active
809:debug:main Merging existing variants '' into variants
810:debug:main new fully merged portvariants:
811:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/atk
812:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
813:debug:main Sourcing PortGroup gobject_introspection 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/gobject_introspection-1.0.tcl
814:debug:main adding the default universal variant
815:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
816:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
817:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
818:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
819:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
820:debug:main No need to upgrade! atk 2.16.0_0 >= atk 2.16.0_0
821:debug:main epoch: in tree: 1 installed: 1
822:debug:main pango 1.36.8_1 exists in the ports tree
823:debug:main pango 1.36.8_1 +quartz+x11 is the latest installed
824:debug:main pango 1.36.8_1 +quartz+x11 is active
825:debug:main Merging existing variants '+quartz+x11' into variants
826:debug:main new fully merged portvariants: x11 + quartz +
827:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/pango
828:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
829:debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
830:debug:main Sourcing PortGroup gobject_introspection 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/gobject_introspection-1.0.tcl
831:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
832:debug:main adding the default universal variant
833:debug:main Executing variant quartz provides quartz
834:debug:main Executing variant x11 provides x11
835:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
836:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
837:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
838:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
839:debug:main No need to upgrade! pango 1.36.8_1 >= pango 1.36.8_1
840:debug:main epoch: in tree: 0 installed: 0
841:debug:main harfbuzz 1.0.1_0 exists in the ports tree
842:debug:main harfbuzz 1.0.1_0  is the latest installed
843:debug:main harfbuzz 1.0.1_0  is active
844:debug:main Merging existing variants '' into variants
845:debug:main new fully merged portvariants:
846:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/graphics/harfbuzz
847:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
848:debug:main adding the default universal variant
849:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
850:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
851:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
852:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
853:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
854:debug:main No need to upgrade! harfbuzz 1.0.1_0 >= harfbuzz 1.0.1_0
855:debug:main epoch: in tree: 0 installed: 0
856:debug:main graphite2 1.2.4_0 exists in the ports tree
857:debug:main graphite2 1.2.4_0  is the latest installed
858:debug:main graphite2 1.2.4_0  is active
859:debug:main Merging existing variants '' into variants
860:debug:main new fully merged portvariants:
861:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/graphics/graphite2
862:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
863:debug:main Re-registering default for configure.dir
864:debug:main Re-registering default for build.dir
865:debug:main Sourcing PortGroup cmake 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/cmake-1.0.tcl
866:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
867:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
868:debug:main universal variant already exists, so not adding the default one
869:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
870:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
871:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
872:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
873:debug:main No need to upgrade! graphite2 1.2.4_0 >= graphite2 1.2.4_0
874:debug:main epoch: in tree: 0 installed: 0
875:debug:main Xft2 2.3.2_0 exists in the ports tree
876:debug:main Xft2 2.3.2_0  is the latest installed
877:debug:main Xft2 2.3.2_0  is active
878:debug:main Merging existing variants '' into variants
879:debug:main new fully merged portvariants:
880:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/Xft2
881:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
882:debug:main adding the default universal variant
883:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
884:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
885:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
886:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
887:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
888:debug:main No need to upgrade! Xft2 2.3.2_0 >= Xft2 2.3.2_0
889:debug:main epoch: in tree: 0 installed: 0
890:debug:main xorg-libXi 1.7.4_0 exists in the ports tree
891:debug:main xorg-libXi 1.7.4_0  is the latest installed
892:debug:main xorg-libXi 1.7.4_0  is active
893:debug:main Merging existing variants '' into variants
894:debug:main new fully merged portvariants:
895:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXi
896:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
897:debug:main adding the default universal variant
898:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
899:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
900:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
901:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
902:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
903:debug:main No need to upgrade! xorg-libXi 1.7.4_0 >= xorg-libXi 1.7.4_0
904:debug:main epoch: in tree: 0 installed: 0
905:debug:main xorg-libXfixes 5.0.1_0 exists in the ports tree
906:debug:main xorg-libXfixes 5.0.1_0  is the latest installed
907:debug:main xorg-libXfixes 5.0.1_0  is active
908:debug:main Merging existing variants '' into variants
909:debug:main new fully merged portvariants:
910:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXfixes
911:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
912:debug:main adding the default universal variant
913:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
914:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
915:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
916:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
917:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
918:debug:main No need to upgrade! xorg-libXfixes 5.0.1_0 >= xorg-libXfixes 5.0.1_0
919:debug:main epoch: in tree: 0 installed: 0
920:debug:main xorg-fixesproto 5.0_0 exists in the ports tree
921:debug:main xorg-fixesproto 5.0_0  is the latest installed
922:debug:main xorg-fixesproto 5.0_0  is active
923:debug:main Merging existing variants '' into variants
924:debug:main new fully merged portvariants:
925:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-fixesproto
926:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
927:debug:main only one arch supported, so not adding the default universal variant
928:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
929:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
930:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
931:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
932:debug:main No need to upgrade! xorg-fixesproto 5.0_0 >= xorg-fixesproto 5.0_0
933:debug:main epoch: in tree: 0 installed: 0
934:debug:main xorg-inputproto 2.3.1_0 exists in the ports tree
935:debug:main xorg-inputproto 2.3.1_0  is the latest installed
936:debug:main xorg-inputproto 2.3.1_0  is active
937:debug:main Merging existing variants '' into variants
938:debug:main new fully merged portvariants:
939:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-inputproto
940:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
941:debug:main only one arch supported, so not adding the default universal variant
942:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
943:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
944:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
945:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
946:debug:main No need to upgrade! xorg-inputproto 2.3.1_0 >= xorg-inputproto 2.3.1_0
947:debug:main epoch: in tree: 0 installed: 0
948:debug:main xorg-libXrandr 1.4.2_0 exists in the ports tree
949:debug:main xorg-libXrandr 1.4.2_0  is the latest installed
950:debug:main xorg-libXrandr 1.4.2_0  is active
951:debug:main Merging existing variants '' into variants
952:debug:main new fully merged portvariants:
953:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXrandr
954:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
955:debug:main adding the default universal variant
956:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
957:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
958:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
959:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
960:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
961:debug:main No need to upgrade! xorg-libXrandr 1.4.2_0 >= xorg-libXrandr 1.4.2_0
962:debug:main epoch: in tree: 0 installed: 0
963:debug:main xorg-randrproto 1.4.1_0 exists in the ports tree
964:debug:main xorg-randrproto 1.4.1_0  is the latest installed
965:debug:main xorg-randrproto 1.4.1_0  is active
966:debug:main Merging existing variants '' into variants
967:debug:main new fully merged portvariants:
968:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-randrproto
969:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
970:debug:main only one arch supported, so not adding the default universal variant
971:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
972:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
973:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
974:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
975:debug:main No need to upgrade! xorg-randrproto 1.4.1_0 >= xorg-randrproto 1.4.1_0
976:debug:main epoch: in tree: 0 installed: 0
977:debug:main xorg-libXcursor 1.1.14_0 exists in the ports tree
978:debug:main xorg-libXcursor 1.1.14_0  is the latest installed
979:debug:main xorg-libXcursor 1.1.14_0  is active
980:debug:main Merging existing variants '' into variants
981:debug:main new fully merged portvariants:
982:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXcursor
983:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
984:debug:main adding the default universal variant
985:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
986:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
987:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
988:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
989:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
990:debug:main No need to upgrade! xorg-libXcursor 1.1.14_0 >= xorg-libXcursor 1.1.14_0
991:debug:main epoch: in tree: 0 installed: 0
992:debug:main xorg-libXinerama 1.1.3_0 exists in the ports tree
993:debug:main xorg-libXinerama 1.1.3_0  is the latest installed
994:debug:main xorg-libXinerama 1.1.3_0  is active
995:debug:main Merging existing variants '' into variants
996:debug:main new fully merged portvariants:
997:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXinerama
998:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
999:debug:main adding the default universal variant
1000:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1001:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1002:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1003:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1004:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1005:debug:main No need to upgrade! xorg-libXinerama 1.1.3_0 >= xorg-libXinerama 1.1.3_0
1006:debug:main epoch: in tree: 0 installed: 0
1007:debug:main xorg-xineramaproto 1.2.1_0 exists in the ports tree
1008:debug:main xorg-xineramaproto 1.2.1_0  is the latest installed
1009:debug:main xorg-xineramaproto 1.2.1_0  is active
1010:debug:main Merging existing variants '' into variants
1011:debug:main new fully merged portvariants:
1012:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xineramaproto
1013:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
1014:debug:main only one arch supported, so not adding the default universal variant
1015:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1016:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1017:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1018:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1019:debug:main No need to upgrade! xorg-xineramaproto 1.2.1_0 >= xorg-xineramaproto 1.2.1_0
1020:debug:main epoch: in tree: 0 installed: 0
1021:debug:main xorg-libXdamage 1.1.4_0 exists in the ports tree
1022:debug:main xorg-libXdamage 1.1.4_0  is the latest installed
1023:debug:main xorg-libXdamage 1.1.4_0  is active
1024:debug:main Merging existing variants '' into variants
1025:debug:main new fully merged portvariants:
1026:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXdamage
1027:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
1028:debug:main adding the default universal variant
1029:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1030:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1031:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1032:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1033:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1034:debug:main No need to upgrade! xorg-libXdamage 1.1.4_0 >= xorg-libXdamage 1.1.4_0
1035:debug:main epoch: in tree: 0 installed: 0
1036:debug:main xorg-damageproto 1.2.1_0 exists in the ports tree
1037:debug:main xorg-damageproto 1.2.1_0  is the latest installed
1038:debug:main xorg-damageproto 1.2.1_0  is active
1039:debug:main Merging existing variants '' into variants
1040:debug:main new fully merged portvariants:
1041:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-damageproto
1042:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
1043:debug:main only one arch supported, so not adding the default universal variant
1044:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1045:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1046:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1047:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1048:debug:main No need to upgrade! xorg-damageproto 1.2.1_0 >= xorg-damageproto 1.2.1_0
1049:debug:main epoch: in tree: 0 installed: 0
1050:debug:main xorg-libXcomposite 0.4.4_0 exists in the ports tree
1051:debug:main xorg-libXcomposite 0.4.4_0  is the latest installed
1052:debug:main xorg-libXcomposite 0.4.4_0  is active
1053:debug:main Merging existing variants '' into variants
1054:debug:main new fully merged portvariants:
1055:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXcomposite
1056:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
1057:debug:main adding the default universal variant
1058:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1059:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1060:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1061:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1062:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1063:debug:main No need to upgrade! xorg-libXcomposite 0.4.4_0 >= xorg-libXcomposite 0.4.4_0
1064:debug:main epoch: in tree: 0 installed: 0
1065:debug:main xorg-compositeproto 0.4.2_0 exists in the ports tree
1066:debug:main xorg-compositeproto 0.4.2_0  is the latest installed
1067:debug:main xorg-compositeproto 0.4.2_0  is active
1068:debug:main Merging existing variants '' into variants
1069:debug:main new fully merged portvariants:
1070:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-compositeproto
1071:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
1072:debug:main only one arch supported, so not adding the default universal variant
1073:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1074:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1075:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1076:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1077:debug:main No need to upgrade! xorg-compositeproto 0.4.2_0 >= xorg-compositeproto 0.4.2_0
1078:debug:main epoch: in tree: 0 installed: 0
1079:debug:main hicolor-icon-theme 0.15_0 exists in the ports tree
1080:debug:main hicolor-icon-theme 0.15_0  is the latest installed
1081:debug:main hicolor-icon-theme 0.15_0  is active
1082:debug:main Merging existing variants '' into variants
1083:debug:main new fully merged portvariants:
1084:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/gnome/hicolor-icon-theme
1085:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
1086:debug:main only one arch supported, so not adding the default universal variant
1087:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1088:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1089:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1090:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1091:debug:main No need to upgrade! hicolor-icon-theme 0.15_0 >= hicolor-icon-theme 0.15_0
1092:debug:main epoch: in tree: 0 installed: 0
1093:debug:main hdf5 1.8.15-patch1_0 exists in the ports tree
1094:debug:main hdf5 1.8.15-patch1_0 +cxx is the latest installed
1095:debug:main hdf5 1.8.15-patch1_0 +cxx is active
1096:debug:main Merging existing variants '+cxx' into variants
1097:debug:main new fully merged portvariants: cxx +
1098:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/hdf5
1099:debug:main OS darwin/14.4.0 (Mac OS X 10.10) arch i386
1100:debug:main Sourcing PortGroup conflicts_build 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/conflicts_build-1.0.tcl
1101:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1102:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
1103:debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
1104:debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
1105:debug:main Sourcing PortGroup mpi 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl
1106:debug:main universal variant already exists, so not adding the default one
1107:debug:main Executing variant cxx provides cxx
1108:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1109:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1110:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1111:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1112:debug:main No need to upgrade! hdf5 1.8.15-patch1_0 >= hdf5 1.8.15-patch1_0
1113:msg:main --->  Computing dependencies for crystfel:info:main .:debug:main crystfel has no conflicts
1114:debug:main Searching for dependency: pkgconfig
1115:debug:main Found Dependency: receipt exists for pkgconfig
1116:debug:main Searching for dependency: gsl
1117:debug:main Found Dependency: receipt exists for gsl
1118:debug:main Searching for dependency: fftw-3
1119:debug:main Found Dependency: receipt exists for fftw-3
1120:debug:main Searching for dependency: gdk-pixbuf2
1121:debug:main Found Dependency: receipt exists for gdk-pixbuf2
1122:debug:main Searching for dependency: gtk2
1123:debug:main Found Dependency: receipt exists for gtk2
1124:debug:main Searching for dependency: hdf5
1125:debug:main Found Dependency: receipt exists for hdf5
1126:debug:main Searching for dependency: pango
1127:debug:main Found Dependency: receipt exists for pango
1128:msg:main
1129:debug:main Tracelib Sandbox is:
1130:debug:main     /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work=+
1131:debug:main     /Users/rkirian/work/git/macports/science/crystfel=+
1132:debug:main     /opt/local/var/macports/distfiles/crystfel=+
1133:debug:main     /bin=+
1134:debug:main     /sbin=+
1135:debug:main     /dev=+
1136:debug:main     /usr/bin=+
1137:debug:main     /usr/sbin=+
1138:debug:main     /usr/include=+
1139:debug:main     /usr/lib=+
1140:debug:main     /usr/libexec=+
1141:debug:main     /usr/share=+
1142:debug:main     /System/Library=+
1143:debug:main     /Library/Frameworks=-
1144:debug:main     /Library=+
1145:debug:main     /etc/passwd=+
1146:debug:main     /private/etc/passwd=+
1147:debug:main     /etc/groups=+
1148:debug:main     /private/etc/groups=+
1149:debug:main     /etc/localtime=+
1150:debug:main     /private/etc/localtime=+
1151:debug:main     /tmp=+
1152:debug:main     /var/tmp=+
1153:debug:main     /private/var/tmp=+
1154:debug:main     /var/folders=+
1155:debug:main     /private/var/folders=+
1156:debug:main     /var/empty=+
1157:debug:main     /private/var/empty=+
1158:debug:main     /var/run=+
1159:debug:main     /private/var/run=+
1160:debug:main     /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.tmp=+
1161:debug:main     /var/db/xcode_select_link=+
1162:debug:main     /private/var/db/xcode_select_link=+
1163:debug:main     /var/db/mds=+
1164:debug:main     /private/var/db/mds=+
1165:debug:main     /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist=+
1166:debug:main     /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/Library/Preferences/com.apple.dt.Xcode.plist=+
1167:debug:main     /Applications/Xcode.app=+
1168:debug:main     /var/db/launchd.db=+
1169:debug:main     /private/var/db/launchd.db=+
1170:debug:main     /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/.ccache=+
1171:debug:main     /opt/local/var/macports/build/.ccache=+
1172:debug:main     /opt/local=?
1173:debug:main Tracemode will respect recursively collected port dependencies:
1174:debug:main Executing org.macports.main (crystfel)
1175:debug:main changing euid/egid - current euid: 0 - current egid: 0
1176:debug:main egid changed to: 501
1177:debug:main euid changed to: 502
1178:debug:archivefetch archivefetch phase started at Thu Aug  6 09:57:10 MST 2015
1179:debug:archivefetch Tracelib Sandbox is:
1180:debug:archivefetch     /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work=+
1181:debug:archivefetch     /Users/rkirian/work/git/macports/science/crystfel=+
1182:debug:archivefetch     /opt/local/var/macports/distfiles/crystfel=+
1183:debug:archivefetch     /bin=+
1184:debug:archivefetch     /sbin=+
1185:debug:archivefetch     /dev=+
1186:debug:archivefetch     /usr/bin=+
1187:debug:archivefetch     /usr/sbin=+
1188:debug:archivefetch     /usr/include=+
1189:debug:archivefetch     /usr/lib=+
1190:debug:archivefetch     /usr/libexec=+
1191:debug:archivefetch     /usr/share=+
1192:debug:archivefetch     /System/Library=+
1193:debug:archivefetch     /Library/Frameworks=-
1194:debug:archivefetch     /Library=+
1195:debug:archivefetch     /etc/passwd=+
1196:debug:archivefetch     /private/etc/passwd=+
1197:debug:archivefetch     /etc/groups=+
1198:debug:archivefetch     /private/etc/groups=+
1199:debug:archivefetch     /etc/localtime=+
1200:debug:archivefetch     /private/etc/localtime=+
1201:debug:archivefetch     /tmp=+
1202:debug:archivefetch     /var/tmp=+
1203:debug:archivefetch     /private/var/tmp=+
1204:debug:archivefetch     /var/folders=+
1205:debug:archivefetch     /private/var/folders=+
1206:debug:archivefetch     /var/empty=+
1207:debug:archivefetch     /private/var/empty=+
1208:debug:archivefetch     /var/run=+
1209:debug:archivefetch     /private/var/run=+
1210:debug:archivefetch     /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.tmp=+
1211:debug:archivefetch     /var/db/xcode_select_link=+
1212:debug:archivefetch     /private/var/db/xcode_select_link=+
1213:debug:archivefetch     /var/db/mds=+
1214:debug:archivefetch     /private/var/db/mds=+
1215:debug:archivefetch     /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist=+
1216:debug:archivefetch     /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/Library/Preferences/com.apple.dt.Xcode.plist=+
1217:debug:archivefetch     /Applications/Xcode.app=+
1218:debug:archivefetch     /var/db/launchd.db=+
1219:debug:archivefetch     /private/var/db/launchd.db=+
1220:debug:archivefetch     /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/.ccache=+
1221:debug:archivefetch     /opt/local/var/macports/build/.ccache=+
1222:debug:archivefetch     /opt/local=?
1223:debug:archivefetch Tracemode will respect recursively collected port dependencies:
1224:debug:archivefetch Executing org.macports.archivefetch (crystfel)
1225:debug:archivefetch Privilege de-escalation not attempted as not running as root.
1226:debug:fetch fetch phase started at Thu Aug  6 09:57:11 MST 2015
1227:notice:fetch --->  Fetching distfiles for crystfel
1228:debug:fetch Tracelib Sandbox is:
1229:debug:fetch    /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work=+
1230:debug:fetch    /Users/rkirian/work/git/macports/science/crystfel=+
1231:debug:fetch    /opt/local/var/macports/distfiles/crystfel=+
1232:debug:fetch    /bin=+
1233:debug:fetch    /sbin=+
1234:debug:fetch    /dev=+
1235:debug:fetch    /usr/bin=+
1236:debug:fetch    /usr/sbin=+
1237:debug:fetch    /usr/include=+
1238:debug:fetch    /usr/lib=+
1239:debug:fetch    /usr/libexec=+
1240:debug:fetch    /usr/share=+
1241:debug:fetch    /System/Library=+
1242:debug:fetch    /Library/Frameworks=-
1243:debug:fetch    /Library=+
1244:debug:fetch    /etc/passwd=+
1245:debug:fetch    /private/etc/passwd=+
1246:debug:fetch    /etc/groups=+
1247:debug:fetch    /private/etc/groups=+
1248:debug:fetch    /etc/localtime=+
1249:debug:fetch    /private/etc/localtime=+
1250:debug:fetch    /tmp=+
1251:debug:fetch    /var/tmp=+
1252:debug:fetch    /private/var/tmp=+
1253:debug:fetch    /var/folders=+
1254:debug:fetch    /private/var/folders=+
1255:debug:fetch    /var/empty=+
1256:debug:fetch    /private/var/empty=+
1257:debug:fetch    /var/run=+
1258:debug:fetch    /private/var/run=+
1259:debug:fetch    /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.tmp=+
1260:debug:fetch    /var/db/xcode_select_link=+
1261:debug:fetch    /private/var/db/xcode_select_link=+
1262:debug:fetch    /var/db/mds=+
1263:debug:fetch    /private/var/db/mds=+
1264:debug:fetch    /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist=+
1265:debug:fetch    /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/Library/Preferences/com.apple.dt.Xcode.plist=+
1266:debug:fetch    /Applications/Xcode.app=+
1267:debug:fetch    /var/db/launchd.db=+
1268:debug:fetch    /private/var/db/launchd.db=+
1269:debug:fetch    /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/.ccache=+
1270:debug:fetch    /opt/local/var/macports/build/.ccache=+
1271:debug:fetch    /opt/local=?
1272:debug:fetch Tracemode will respect recursively collected port dependencies:
1273:debug:fetch Executing org.macports.fetch (crystfel)
1274:debug:fetch Privilege de-escalation not attempted as not running as root.
1275:debug:checksum checksum phase started at Thu Aug  6 09:57:11 MST 2015
1276:notice:checksum --->  Verifying checksums for crystfel
1277:debug:checksum Tracelib Sandbox is:
1278:debug:checksum         /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work=+
1279:debug:checksum         /Users/rkirian/work/git/macports/science/crystfel=+
1280:debug:checksum         /opt/local/var/macports/distfiles/crystfel=+
1281:debug:checksum         /bin=+
1282:debug:checksum         /sbin=+
1283:debug:checksum         /dev=+
1284:debug:checksum         /usr/bin=+
1285:debug:checksum         /usr/sbin=+
1286:debug:checksum         /usr/include=+
1287:debug:checksum         /usr/lib=+
1288:debug:checksum         /usr/libexec=+
1289:debug:checksum         /usr/share=+
1290:debug:checksum         /System/Library=+
1291:debug:checksum         /Library/Frameworks=-
1292:debug:checksum         /Library=+
1293:debug:checksum         /etc/passwd=+
1294:debug:checksum         /private/etc/passwd=+
1295:debug:checksum         /etc/groups=+
1296:debug:checksum         /private/etc/groups=+
1297:debug:checksum         /etc/localtime=+
1298:debug:checksum         /private/etc/localtime=+
1299:debug:checksum         /tmp=+
1300:debug:checksum         /var/tmp=+
1301:debug:checksum         /private/var/tmp=+
1302:debug:checksum         /var/folders=+
1303:debug:checksum         /private/var/folders=+
1304:debug:checksum         /var/empty=+
1305:debug:checksum         /private/var/empty=+
1306:debug:checksum         /var/run=+
1307:debug:checksum         /private/var/run=+
1308:debug:checksum         /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.tmp=+
1309:debug:checksum         /var/db/xcode_select_link=+
1310:debug:checksum         /private/var/db/xcode_select_link=+
1311:debug:checksum         /var/db/mds=+
1312:debug:checksum         /private/var/db/mds=+
1313:debug:checksum         /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist=+
1314:debug:checksum         /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/Library/Preferences/com.apple.dt.Xcode.plist=+
1315:debug:checksum         /Applications/Xcode.app=+
1316:debug:checksum         /var/db/launchd.db=+
1317:debug:checksum         /private/var/db/launchd.db=+
1318:debug:checksum         /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/.ccache=+
1319:debug:checksum         /opt/local/var/macports/build/.ccache=+
1320:debug:checksum         /opt/local=?
1321:debug:checksum Tracemode will respect recursively collected port dependencies:
1322:debug:checksum Executing org.macports.checksum (crystfel)
1323:info:checksum --->  Checksumming crystfel-0.6.1.tar.gz
1324:debug:checksum Calculated (rmd160) is df8dcdabb4fd8deb76ab4e6e96fd663702bfe0d8
1325:debug:checksum Correct (rmd160) checksum for crystfel-0.6.1.tar.gz
1326:debug:checksum Calculated (sha256) is 31d0aa28c6c7ee550498dd9c3e736a0ac7c8c0c7529bf7bb7ca1c27ba7e9e105
1327:debug:checksum Correct (sha256) checksum for crystfel-0.6.1.tar.gz
1328:debug:checksum Privilege de-escalation not attempted as not running as root.
1329:debug:extract extract phase started at Thu Aug  6 09:57:11 MST 2015
1330:notice:extract --->  Extracting crystfel
1331:debug:extract Tracelib Sandbox is:
1332:debug:extract  /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work=+
1333:debug:extract  /Users/rkirian/work/git/macports/science/crystfel=+
1334:debug:extract  /opt/local/var/macports/distfiles/crystfel=+
1335:debug:extract  /bin=+
1336:debug:extract  /sbin=+
1337:debug:extract  /dev=+
1338:debug:extract  /usr/bin=+
1339:debug:extract  /usr/sbin=+
1340:debug:extract  /usr/include=+
1341:debug:extract  /usr/lib=+
1342:debug:extract  /usr/libexec=+
1343:debug:extract  /usr/share=+
1344:debug:extract  /System/Library=+
1345:debug:extract  /Library/Frameworks=-
1346:debug:extract  /Library=+
1347:debug:extract  /etc/passwd=+
1348:debug:extract  /private/etc/passwd=+
1349:debug:extract  /etc/groups=+
1350:debug:extract  /private/etc/groups=+
1351:debug:extract  /etc/localtime=+
1352:debug:extract  /private/etc/localtime=+
1353:debug:extract  /tmp=+
1354:debug:extract  /var/tmp=+
1355:debug:extract  /private/var/tmp=+
1356:debug:extract  /var/folders=+
1357:debug:extract  /private/var/folders=+
1358:debug:extract  /var/empty=+
1359:debug:extract  /private/var/empty=+
1360:debug:extract  /var/run=+
1361:debug:extract  /private/var/run=+
1362:debug:extract  /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.tmp=+
1363:debug:extract  /var/db/xcode_select_link=+
1364:debug:extract  /private/var/db/xcode_select_link=+
1365:debug:extract  /var/db/mds=+
1366:debug:extract  /private/var/db/mds=+
1367:debug:extract  /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist=+
1368:debug:extract  /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/Library/Preferences/com.apple.dt.Xcode.plist=+
1369:debug:extract  /Applications/Xcode.app=+
1370:debug:extract  /var/db/launchd.db=+
1371:debug:extract  /private/var/db/launchd.db=+
1372:debug:extract  /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/.ccache=+
1373:debug:extract  /opt/local/var/macports/build/.ccache=+
1374:debug:extract  /opt/local=?
1375:debug:extract Tracemode will respect recursively collected port dependencies:
1376:debug:extract Executing org.macports.extract (crystfel)
1377:info:extract --->  Extracting crystfel-0.6.1.tar.gz
1378:debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/crystfel/crystfel-0.6.1.tar.gz'
1379:debug:extract Environment:
1380CC_PRINT_OPTIONS='YES'
1381CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.CC_PRINT_OPTIONS'
1382CPATH='/opt/local/include'
1383LIBRARY_PATH='/opt/local/lib'
1384MACOSX_DEPLOYMENT_TARGET='10.10'
1385:debug:extract Assembled command: 'cd "/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/crystfel/crystfel-0.6.1.tar.gz' | /usr/bin/tar -xf -'
1386:debug:extract Executing command line:  cd "/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/crystfel/crystfel-0.6.1.tar.gz' | /usr/bin/tar -xf -
1387:debug:extract euid/egid changed to: 0/0
1388:debug:extract chowned /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work to macports
1389:debug:extract euid/egid changed to: 502/501
1390:debug:extract Privilege de-escalation not attempted as not running as root.
1391:debug:patch patch phase started at Thu Aug  6 09:57:11 MST 2015
1392:debug:patch Tracelib Sandbox is:
1393:debug:patch    /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work=+
1394:debug:patch    /Users/rkirian/work/git/macports/science/crystfel=+
1395:debug:patch    /opt/local/var/macports/distfiles/crystfel=+
1396:debug:patch    /bin=+
1397:debug:patch    /sbin=+
1398:debug:patch    /dev=+
1399:debug:patch    /usr/bin=+
1400:debug:patch    /usr/sbin=+
1401:debug:patch    /usr/include=+
1402:debug:patch    /usr/lib=+
1403:debug:patch    /usr/libexec=+
1404:debug:patch    /usr/share=+
1405:debug:patch    /System/Library=+
1406:debug:patch    /Library/Frameworks=-
1407:debug:patch    /Library=+
1408:debug:patch    /etc/passwd=+
1409:debug:patch    /private/etc/passwd=+
1410:debug:patch    /etc/groups=+
1411:debug:patch    /private/etc/groups=+
1412:debug:patch    /etc/localtime=+
1413:debug:patch    /private/etc/localtime=+
1414:debug:patch    /tmp=+
1415:debug:patch    /var/tmp=+
1416:debug:patch    /private/var/tmp=+
1417:debug:patch    /var/folders=+
1418:debug:patch    /private/var/folders=+
1419:debug:patch    /var/empty=+
1420:debug:patch    /private/var/empty=+
1421:debug:patch    /var/run=+
1422:debug:patch    /private/var/run=+
1423:debug:patch    /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.tmp=+
1424:debug:patch    /var/db/xcode_select_link=+
1425:debug:patch    /private/var/db/xcode_select_link=+
1426:debug:patch    /var/db/mds=+
1427:debug:patch    /private/var/db/mds=+
1428:debug:patch    /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist=+
1429:debug:patch    /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/Library/Preferences/com.apple.dt.Xcode.plist=+
1430:debug:patch    /Applications/Xcode.app=+
1431:debug:patch    /var/db/launchd.db=+
1432:debug:patch    /private/var/db/launchd.db=+
1433:debug:patch    /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/.ccache=+
1434:debug:patch    /opt/local/var/macports/build/.ccache=+
1435:debug:patch    /opt/local=?
1436:debug:patch Tracemode will respect recursively collected port dependencies:
1437:debug:patch Executing org.macports.patch (crystfel)
1438:debug:patch Privilege de-escalation not attempted as not running as root.
1439:debug:configure configure phase started at Thu Aug  6 09:57:11 MST 2015
1440:notice:configure --->  Configuring crystfel
1441:debug:configure Using compiler 'Xcode Clang'
1442:debug:configure Tracelib Sandbox is:
1443:debug:configure        /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work=+
1444:debug:configure        /Users/rkirian/work/git/macports/science/crystfel=+
1445:debug:configure        /opt/local/var/macports/distfiles/crystfel=+
1446:debug:configure        /bin=+
1447:debug:configure        /sbin=+
1448:debug:configure        /dev=+
1449:debug:configure        /usr/bin=+
1450:debug:configure        /usr/sbin=+
1451:debug:configure        /usr/include=+
1452:debug:configure        /usr/lib=+
1453:debug:configure        /usr/libexec=+
1454:debug:configure        /usr/share=+
1455:debug:configure        /System/Library=+
1456:debug:configure        /Library/Frameworks=-
1457:debug:configure        /Library=+
1458:debug:configure        /etc/passwd=+
1459:debug:configure        /private/etc/passwd=+
1460:debug:configure        /etc/groups=+
1461:debug:configure        /private/etc/groups=+
1462:debug:configure        /etc/localtime=+
1463:debug:configure        /private/etc/localtime=+
1464:debug:configure        /tmp=+
1465:debug:configure        /var/tmp=+
1466:debug:configure        /private/var/tmp=+
1467:debug:configure        /var/folders=+
1468:debug:configure        /private/var/folders=+
1469:debug:configure        /var/empty=+
1470:debug:configure        /private/var/empty=+
1471:debug:configure        /var/run=+
1472:debug:configure        /private/var/run=+
1473:debug:configure        /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.tmp=+
1474:debug:configure        /var/db/xcode_select_link=+
1475:debug:configure        /private/var/db/xcode_select_link=+
1476:debug:configure        /var/db/mds=+
1477:debug:configure        /private/var/db/mds=+
1478:debug:configure        /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist=+
1479:debug:configure        /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/Library/Preferences/com.apple.dt.Xcode.plist=+
1480:debug:configure        /Applications/Xcode.app=+
1481:debug:configure        /var/db/launchd.db=+
1482:debug:configure        /private/var/db/launchd.db=+
1483:debug:configure        /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/.ccache=+
1484:debug:configure        /opt/local/var/macports/build/.ccache=+
1485:debug:configure        /opt/local=?
1486:debug:configure Tracemode will respect recursively collected port dependencies: Xft2 atk bzip2 cairo db48 db_select expat fftw-3 fontconfig freetype gdk-pixbuf2 gettext glib2 gobject-introspection graphite2 gsl gtk2 harfbuzz hdf5 hicolor-icon-theme jasper jpeg libedit libffi libiconv libpixman libpng libtool libxml2 ncurses openssl pango pkgconfig py27-beaker py27-mako py27-markupsafe py27-setuptools python27 python2_select python_select shared-mime-info sqlite3 tiff xorg-compositeproto xorg-damageproto xorg-fixesproto xorg-inputproto xorg-kbproto xorg-libX11 xorg-libXau xorg-libXcomposite xorg-libXcursor xorg-libXdamage xorg-libXdmcp xorg-libXext xorg-libXfixes xorg-libXi xorg-libXinerama xorg-libXrandr xorg-libpthread-stubs xorg-libxcb xorg-randrproto xorg-renderproto xorg-xcb-proto xorg-xcb-util xorg-xextproto xorg-xineramaproto xorg-xproto xrender xz zlib
1487:debug:configure Executing org.macports.configure (crystfel)
1488:debug:configure Environment:
1489CC='/usr/bin/clang'
1490CC_PRINT_OPTIONS='YES'
1491CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.CC_PRINT_OPTIONS'
1492CFLAGS='-pipe -Os -arch x86_64'
1493CPATH='/opt/local/include'
1494CPPFLAGS='-I/opt/local/include'
1495CXX='/usr/bin/clang++'
1496CXXFLAGS='-pipe -Os -arch x86_64 -stdlib=libc++'
1497F77FLAGS='-m64'
1498F90FLAGS='-pipe -Os -m64'
1499FCFLAGS='-pipe -Os -m64'
1500FFLAGS='-pipe -Os'
1501INSTALL='/usr/bin/install -c'
1502LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64'
1503LIBRARY_PATH='/opt/local/lib'
1504MACOSX_DEPLOYMENT_TARGET='10.10'
1505OBJC='/usr/bin/clang'
1506OBJCFLAGS='-pipe -Os -arch x86_64'
1507OBJCXX='/usr/bin/clang++'
1508OBJCXXFLAGS='-pipe -Os -arch x86_64 -stdlib=libc++'
1509:debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1" && ./configure --prefix=/opt/local --disable-silent-rules'
1510:debug:configure Executing command line:  cd "/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1" && ./configure --prefix=/opt/local --disable-silent-rules
1511:info:configure checking for a BSD-compatible install... /usr/bin/install -c
1512:info:configure checking whether build environment is sane... yes
1513:info:configure checking for a thread-safe mkdir -p... build-aux/install-sh -c -d
1514:info:configure checking for gawk... no
1515:info:configure checking for mawk... no
1516:info:configure checking for nawk... no
1517:info:configure checking for awk... awk
1518:info:configure checking whether make sets $(MAKE)... yes
1519:info:configure checking whether make supports nested variables... yes
1520:info:configure checking for gcc... /usr/bin/clang
1521:info:configure checking whether the C compiler works... yes
1522:info:configure checking for C compiler default output file name... a.out
1523:info:configure checking for suffix of executables...
1524:info:configure checking whether we are cross compiling... no
1525:info:configure checking for suffix of object files... o
1526:info:configure checking whether we are using the GNU C compiler... yes
1527:info:configure checking whether /usr/bin/clang accepts -g... yes
1528:info:configure checking for /usr/bin/clang option to accept ISO C89... none needed
1529:info:configure checking for style of include used by make... GNU
1530:info:configure checking dependency style of /usr/bin/clang... gcc3
1531:info:configure checking how to run the C preprocessor... /usr/bin/clang -E
1532:info:configure checking for grep that handles long lines and -e... /usr/bin/grep
1533:info:configure checking for egrep... /usr/bin/grep -E
1534:info:configure checking for Minix Amsterdam compiler... no
1535:info:configure checking for ar... ar
1536:info:configure checking for ranlib... ranlib
1537:info:configure checking for ANSI C header files... yes
1538:info:configure checking for sys/types.h... yes
1539:info:configure checking for sys/stat.h... yes
1540:info:configure checking for stdlib.h... yes
1541:info:configure checking for string.h... yes
1542:info:configure checking for memory.h... yes
1543:info:configure checking for strings.h... yes
1544:info:configure checking for inttypes.h... yes
1545:info:configure checking for stdint.h... yes
1546:info:configure checking for unistd.h... yes
1547:info:configure checking minix/config.h usability... no
1548:info:configure checking minix/config.h presence... no
1549:info:configure checking for minix/config.h... no
1550:info:configure checking whether it is safe to define __EXTENSIONS__... yes
1551:info:configure checking whether _XOPEN_SOURCE should be defined... no
1552:info:configure checking whether /usr/bin/clang and cc understand -c and -o together... yes
1553:info:configure checking for gawk... (cached) awk
1554:info:configure checking whether ln -s works... yes
1555:info:configure checking build system type... x86_64-apple-darwin14.4.0
1556:info:configure checking host system type... x86_64-apple-darwin14.4.0
1557:info:configure checking how to print strings... printf
1558:info:configure checking for a sed that does not truncate output... /usr/bin/sed
1559:info:configure checking for fgrep... /usr/bin/grep -F
1560:info:configure checking for ld used by /usr/bin/clang... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
1561:info:configure checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
1562:info:configure checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm
1563:info:configure checking the name lister (/usr/bin/nm) interface... BSD nm
1564:info:configure checking the maximum length of command line arguments... 196608
1565:info:configure checking whether the shell understands some XSI constructs... yes
1566:info:configure checking whether the shell understands "+="... yes
1567:info:configure checking how to convert x86_64-apple-darwin14.4.0 file names to x86_64-apple-darwin14.4.0 format... func_convert_file_noop
1568:info:configure checking how to convert x86_64-apple-darwin14.4.0 file names to toolchain format... func_convert_file_noop
1569:info:configure checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r
1570:info:configure checking for objdump... no
1571:info:configure checking how to recognize dependent libraries... pass_all
1572:info:configure checking for dlltool... no
1573:info:configure checking how to associate runtime and link libraries... printf %s\n
1574:info:configure checking for archiver @FILE support... no
1575:info:configure checking for strip... strip
1576:info:configure checking for ranlib... (cached) ranlib
1577:info:configure checking command to parse /usr/bin/nm output from /usr/bin/clang object... ok
1578:info:configure checking for sysroot... no
1579:info:configure checking for mt... no
1580:info:configure checking if : is a manifest tool... no
1581:info:configure checking for dsymutil... dsymutil
1582:info:configure checking for nmedit... nmedit
1583:info:configure checking for lipo... lipo
1584:info:configure checking for otool... otool
1585:info:configure checking for otool64... no
1586:info:configure checking for -single_module linker flag... yes
1587:info:configure checking for -exported_symbols_list linker flag... yes
1588:info:configure checking for -force_load linker flag... yes
1589:info:configure checking for dlfcn.h... yes
1590:info:configure checking for objdir... .libs
1591:info:configure checking if /usr/bin/clang supports -fno-rtti -fno-exceptions... yes
1592:info:configure checking for /usr/bin/clang option to produce PIC... -fno-common -DPIC
1593:info:configure checking if /usr/bin/clang PIC flag -fno-common -DPIC works... yes
1594:info:configure checking if /usr/bin/clang static flag -static works... no
1595:info:configure checking if /usr/bin/clang supports -c -o file.o... yes
1596:info:configure checking if /usr/bin/clang supports -c -o file.o... (cached) yes
1597:info:configure checking whether the /usr/bin/clang linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
1598:info:configure checking dynamic linker characteristics... darwin14.4.0 dyld
1599:info:configure checking how to hardcode library paths into programs... immediate
1600:info:configure checking whether stripping libraries is possible... yes
1601:info:configure checking if libtool supports shared libraries... yes
1602:info:configure checking whether to build shared libraries... yes
1603:info:configure checking whether to build static libraries... yes
1604:info:configure checking whether make supports nested variables... (cached) yes
1605:info:configure checking for ANSI C header files... (cached) yes
1606:info:configure checking fcntl.h usability... yes
1607:info:configure checking fcntl.h presence... yes
1608:info:configure checking for fcntl.h... yes
1609:info:configure checking for stdlib.h... (cached) yes
1610:info:configure checking for unistd.h... (cached) yes
1611:info:configure checking for an ANSI C-conforming const... yes
1612:info:configure checking for stdlib.h... (cached) yes
1613:info:configure checking for GNU libc compatible malloc... yes
1614:info:configure checking whether the preprocessor supports include_next... yes
1615:info:configure checking whether system header files limit the line length... no
1616:info:configure checking for complete errno.h... yes
1617:info:configure checking for unistd.h... (cached) yes
1618:info:configure checking pty.h usability... no
1619:info:configure checking pty.h presence... no
1620:info:configure checking for pty.h... no
1621:info:configure checking sys/socket.h usability... yes
1622:info:configure checking sys/socket.h presence... yes
1623:info:configure checking for sys/socket.h... yes
1624:info:configure checking sys/ioctl.h usability... yes
1625:info:configure checking sys/ioctl.h presence... yes
1626:info:configure checking for sys/ioctl.h... yes
1627:info:configure checking sys/uio.h usability... yes
1628:info:configure checking sys/uio.h presence... yes
1629:info:configure checking for sys/uio.h... yes
1630:info:configure checking for symlink... yes
1631:info:configure checking for _set_invalid_parameter_handler... no
1632:info:configure checking for posix_openpt... yes
1633:info:configure checking for strndup... yes
1634:info:configure checking for working fcntl.h... no (bad O_NOATIME)
1635:info:configure checking for pid_t... yes
1636:info:configure checking for mode_t... yes
1637:info:configure checking for library containing forkpty... none required
1638:info:configure checking util.h usability... yes
1639:info:configure checking util.h presence... yes
1640:info:configure checking for util.h... yes
1641:info:configure checking libutil.h usability... no
1642:info:configure checking libutil.h presence... no
1643:info:configure checking for libutil.h... no
1644:info:configure checking whether forkpty is declared without a macro... yes
1645:info:configure checking whether openpty is declared without a macro... yes
1646:info:configure checking whether <sys/socket.h> is self-contained... yes
1647:info:configure checking for shutdown... yes
1648:info:configure checking whether <sys/socket.h> defines the SHUT_* macros... yes
1649:info:configure checking for struct sockaddr_storage... yes
1650:info:configure checking for sa_family_t... yes
1651:info:configure checking for struct sockaddr_storage.ss_family... yes
1652:info:configure checking whether socket is declared without a macro... yes
1653:info:configure checking whether connect is declared without a macro... yes
1654:info:configure checking whether accept is declared without a macro... yes
1655:info:configure checking whether bind is declared without a macro... yes
1656:info:configure checking whether getpeername is declared without a macro... yes
1657:info:configure checking whether getsockname is declared without a macro... yes
1658:info:configure checking whether getsockopt is declared without a macro... yes
1659:info:configure checking whether listen is declared without a macro... yes
1660:info:configure checking whether recv is declared without a macro... yes
1661:info:configure checking whether send is declared without a macro... yes
1662:info:configure checking whether recvfrom is declared without a macro... yes
1663:info:configure checking whether sendto is declared without a macro... yes
1664:info:configure checking whether setsockopt is declared without a macro... yes
1665:info:configure checking whether shutdown is declared without a macro... yes
1666:info:configure checking whether accept4 is declared without a macro... no
1667:info:configure checking for wchar_t... yes
1668:info:configure checking for C/C++ restrict keyword... __restrict
1669:info:configure checking whether ffsl is declared without a macro... yes
1670:info:configure checking whether ffsll is declared without a macro... yes
1671:info:configure checking whether memmem is declared without a macro... yes
1672:info:configure checking whether mempcpy is declared without a macro... no
1673:info:configure checking whether memrchr is declared without a macro... no
1674:info:configure checking whether rawmemchr is declared without a macro... no
1675:info:configure checking whether stpcpy is declared without a macro... yes
1676:info:configure checking whether stpncpy is declared without a macro... yes
1677:info:configure checking whether strchrnul is declared without a macro... no
1678:info:configure checking whether strdup is declared without a macro... yes
1679:info:configure checking whether strncat is declared without a macro... yes
1680:info:configure checking whether strndup is declared without a macro... yes
1681:info:configure checking whether strnlen is declared without a macro... yes
1682:info:configure checking whether strpbrk is declared without a macro... yes
1683:info:configure checking whether strsep is declared without a macro... yes
1684:info:configure checking whether strcasestr is declared without a macro... yes
1685:info:configure checking whether strtok_r is declared without a macro... yes
1686:info:configure checking whether strerror_r is declared without a macro... yes
1687:info:configure checking whether strsignal is declared without a macro... yes
1688:info:configure checking whether strverscmp is declared without a macro... no
1689:info:configure checking whether strndup is declared... (cached) yes
1690:info:configure checking whether strnlen is declared... (cached) yes
1691:info:configure checking whether fcntl is declared without a macro... yes
1692:info:configure checking whether openat is declared without a macro... yes
1693:info:configure checking whether forkpty is declared... (cached) yes
1694:info:configure checking for const-safe forkpty signature... no
1695:info:configure checking for ioctl... yes
1696:info:configure checking for ioctl with POSIX signature... no
1697:info:configure checking for C compiler flag to ignore unused libraries... none
1698:info:configure checking for login_tty... yes
1699:info:configure checking whether openpty is declared... (cached) yes
1700:info:configure checking for const-safe openpty signature... no
1701:info:configure checking for socklen_t... yes
1702:info:configure checking for ssize_t... yes
1703:info:configure checking for working stdalign.h... yes
1704:info:configure checking whether NULL can be used in arbitrary expressions... yes
1705:info:configure checking whether _Exit is declared without a macro... yes
1706:info:configure checking whether atoll is declared without a macro... yes
1707:info:configure checking whether canonicalize_file_name is declared without a macro... no
1708:info:configure checking whether getloadavg is declared without a macro... yes
1709:info:configure checking whether getsubopt is declared without a macro... yes
1710:info:configure checking whether grantpt is declared without a macro... yes
1711:info:configure checking whether initstate is declared without a macro... yes
1712:info:configure checking whether initstate_r is declared without a macro... no
1713:info:configure checking whether mkdtemp is declared without a macro... no
1714:info:configure checking whether mkostemp is declared without a macro... no
1715:info:configure checking whether mkostemps is declared without a macro... no
1716:info:configure checking whether mkstemp is declared without a macro... yes
1717:info:configure checking whether mkstemps is declared without a macro... no
1718:info:configure checking whether posix_openpt is declared without a macro... yes
1719:info:configure checking whether ptsname is declared without a macro... yes
1720:info:configure checking whether ptsname_r is declared without a macro... no
1721:info:configure checking whether random is declared without a macro... yes
1722:info:configure checking whether random_r is declared without a macro... no
1723:info:configure checking whether realpath is declared without a macro... yes
1724:info:configure checking whether rpmatch is declared without a macro... no
1725:info:configure checking whether secure_getenv is declared without a macro... no
1726:info:configure checking whether setenv is declared without a macro... yes
1727:info:configure checking whether setstate is declared without a macro... yes
1728:info:configure checking whether setstate_r is declared without a macro... no
1729:info:configure checking whether srandom is declared without a macro... yes
1730:info:configure checking whether srandom_r is declared without a macro... no
1731:info:configure checking whether strtod is declared without a macro... yes
1732:info:configure checking whether strtoll is declared without a macro... yes
1733:info:configure checking whether strtoull is declared without a macro... yes
1734:info:configure checking whether unlockpt is declared without a macro... yes
1735:info:configure checking whether unsetenv is declared without a macro... yes
1736:info:configure checking for working strndup... yes
1737:info:configure checking for working strnlen... yes
1738:info:configure checking whether <sys/ioctl.h> declares ioctl... yes
1739:info:configure checking whether ioctl is declared without a macro... yes
1740:info:configure checking whether <sys/socket.h> is self-contained... (cached) yes
1741:info:configure checking for shutdown... (cached) yes
1742:info:configure checking whether <sys/socket.h> defines the SHUT_* macros... (cached) yes
1743:info:configure checking for struct sockaddr_storage... (cached) yes
1744:info:configure checking for sa_family_t... (cached) yes
1745:info:configure checking for struct sockaddr_storage.ss_family... (cached) yes
1746:info:configure checking whether socket is declared without a macro... (cached) yes
1747:info:configure checking whether connect is declared without a macro... (cached) yes
1748:info:configure checking whether accept is declared without a macro... (cached) yes
1749:info:configure checking whether bind is declared without a macro... (cached) yes
1750:info:configure checking whether getpeername is declared without a macro... (cached) yes
1751:info:configure checking whether getsockname is declared without a macro... (cached) yes
1752:info:configure checking whether getsockopt is declared without a macro... (cached) yes
1753:info:configure checking whether listen is declared without a macro... (cached) yes
1754:info:configure checking whether recv is declared without a macro... (cached) yes
1755:info:configure checking whether send is declared without a macro... (cached) yes
1756:info:configure checking whether recvfrom is declared without a macro... (cached) yes
1757:info:configure checking whether sendto is declared without a macro... (cached) yes
1758:info:configure checking whether setsockopt is declared without a macro... (cached) yes
1759:info:configure checking whether shutdown is declared without a macro... (cached) yes
1760:info:configure checking whether accept4 is declared without a macro... (cached) no
1761:info:configure checking whether chdir is declared without a macro... yes
1762:info:configure checking whether chown is declared without a macro... yes
1763:info:configure checking whether dup is declared without a macro... yes
1764:info:configure checking whether dup2 is declared without a macro... yes
1765:info:configure checking whether dup3 is declared without a macro... no
1766:info:configure checking whether environ is declared without a macro... no
1767:info:configure checking whether euidaccess is declared without a macro... no
1768:info:configure checking whether faccessat is declared without a macro... yes
1769:info:configure checking whether fchdir is declared without a macro... yes
1770:info:configure checking whether fchownat is declared without a macro... yes
1771:info:configure checking whether fdatasync is declared without a macro... no
1772:info:configure checking whether fsync is declared without a macro... yes
1773:info:configure checking whether ftruncate is declared without a macro... yes
1774:info:configure checking whether getcwd is declared without a macro... yes
1775:info:configure checking whether getdomainname is declared without a macro... yes
1776:info:configure checking whether getdtablesize is declared without a macro... yes
1777:info:configure checking whether getgroups is declared without a macro... yes
1778:info:configure checking whether gethostname is declared without a macro... yes
1779:info:configure checking whether getlogin is declared without a macro... yes
1780:info:configure checking whether getlogin_r is declared without a macro... yes
1781:info:configure checking whether getpagesize is declared without a macro... yes
1782:info:configure checking whether getusershell is declared without a macro... yes
1783:info:configure checking whether setusershell is declared without a macro... yes
1784:info:configure checking whether endusershell is declared without a macro... yes
1785:info:configure checking whether group_member is declared without a macro... no
1786:info:configure checking whether isatty is declared without a macro... yes
1787:info:configure checking whether lchown is declared without a macro... yes
1788:info:configure checking whether link is declared without a macro... yes
1789:info:configure checking whether linkat is declared without a macro... yes
1790:info:configure checking whether lseek is declared without a macro... yes
1791:info:configure checking whether pipe is declared without a macro... yes
1792:info:configure checking whether pipe2 is declared without a macro... no
1793:info:configure checking whether pread is declared without a macro... yes
1794:info:configure checking whether pwrite is declared without a macro... yes
1795:info:configure checking whether readlink is declared without a macro... yes
1796:info:configure checking whether readlinkat is declared without a macro... yes
1797:info:configure checking whether rmdir is declared without a macro... yes
1798:info:configure checking whether sethostname is declared without a macro... yes
1799:info:configure checking whether sleep is declared without a macro... yes
1800:info:configure checking whether symlink is declared without a macro... yes
1801:info:configure checking whether symlinkat is declared without a macro... yes
1802:info:configure checking whether ttyname_r is declared without a macro... yes
1803:info:configure checking whether unlink is declared without a macro... yes
1804:info:configure checking whether unlinkat is declared without a macro... yes
1805:info:configure checking whether usleep is declared without a macro... yes
1806:info:configure checking for pkg-config... /opt/local/bin/pkg-config
1807:info:configure checking pkg-config is at least version 0.9.0... yes
1808:info:configure checking for GSL... yes
1809:info:configure checking whether to use OpenCL... no
1810:info:configure checking whether to use GTK... yes
1811:info:configure checking for pkg-config... /opt/local/bin/pkg-config
1812:info:configure checking for GTK+ - version >= 2.0.0... yes (version 2.24.28)
1813:info:configure checking whether to use PNG... yes
1814:info:configure checking for libPNG... yes
1815:info:configure checking whether to use TIFF... yes
1816:info:configure checking for TIFFOpen in -ltiff... yes
1817:info:configure checking whether to use Cairo... yes
1818:info:configure checking for Cairo... yes
1819:info:configure checking whether to use Pango... yes
1820:info:configure checking for Pango... yes
1821:info:configure checking for PangoCairo... yes
1822:info:configure checking whether to use GDK-pixbuf... yes
1823:info:configure checking for GDK_pixbuf_2... yes
1824:info:configure checking for sched_setaffinity in -lpthread... no
1825:info:configure checking for H5Fcreate in -lhdf5... yes
1826:info:configure checking for clock_gettime in -lrt... no
1827:info:configure configure: WARNING: Falling back on gettimeofday().
1828:info:configure configure: WARNING: Time intervals may not be correct in certain circumstances.
1829:info:configure checking for FFTW... yes
1830:info:configure checking for NcursesW wide-character library... yes
1831:info:configure checking for working ncursesw/curses.h... no
1832:info:configure checking for working ncursesw.h... no
1833:info:configure checking for working ncurses.h... yes
1834:info:configure checking for C compiler flag to ignore unused libraries... (cached) none
1835:info:configure checking for gtk-doc... no
1836:info:configure configure: WARNING:
1837:info:configure   You will not be able to create source packages with 'make dist'
1838:info:configure   because gtk-doc >= 1.9 is not found.
1839:info:configure checking for gtkdoc-check... no
1840:info:configure checking for gtkdoc-check... no
1841:info:configure checking for gtkdoc-rebase... no
1842:info:configure checking for gtkdoc-mkpdf... no
1843:info:configure checking whether to build gtk-doc documentation... no
1844:info:configure checking for GTKDOC_DEPS... yes
1845:info:configure checking that generated files are newer than configure... done
1846:info:configure configure: creating ./config.status
1847:info:configure config.status: creating Makefile
1848:info:configure config.status: creating lib/Makefile
1849:info:configure config.status: creating doc/reference/libcrystfel/Makefile
1850:info:configure config.status: creating libcrystfel/Makefile
1851:info:configure config.status: creating libcrystfel/crystfel.pc
1852:info:configure config.status: creating config.h
1853:info:configure config.status: executing depfiles commands
1854:info:configure config.status: executing libtool commands
1855:warn:configure The following existing files were hidden from the build system by trace mode:
1856:msg:configure   /opt/local/bin/ar
1857:msg:configure   /opt/local/bin/gawk
1858:msg:configure   /opt/local/bin/gmkdir
1859:msg:configure   /opt/local/bin/gtkdoc-check
1860:msg:configure   /opt/local/bin/gtkdoc-mkpdf
1861:msg:configure   /opt/local/bin/gtkdoc-rebase
1862:msg:configure   /opt/local/bin/lipo
1863:msg:configure   /opt/local/bin/nm
1864:msg:configure   /opt/local/bin/nmedit
1865:msg:configure   /opt/local/bin/otool
1866:msg:configure   /opt/local/bin/ranlib
1867:msg:configure   /opt/local/bin/strip
1868:msg:configure   /opt/local/lib/mpich-mp/pkgconfig/mpich.pc
1869:msg:configure   /opt/local/lib/mpich-mp/pkgconfig/openpa.pc
1870:info:configure The following files would have been hidden from the build system by trace mode if they existed:
1871:info:configure   /.attbin/uname
1872:info:configure   /.buildenv
1873:info:configure   /AppleInternal
1874:info:configure   /AppleInternal/Developer/Toolchains
1875:info:configure   /Developer
1876:info:configure   /Info.plist
1877:info:configure   /Library/Frameworks/minix.framework
1878:info:configure   /Library/Frameworks/ncursesw.framework
1879:info:configure   /bin;/bin/sh
1880:info:configure   /etc/SuSE-release
1881:info:configure   /etc/asl/.noquota
1882:info:configure   /opt/sfw/bin/gmkdir
1883:info:configure   /opt/sfw/bin/mkdir
1884:info:configure   /usr/ccs/bin/elf/nm
1885:info:configure   /usr/ccs/bin/nm
1886:info:configure   /usr/convex/getsysinfo
1887:info:configure   /usr/gnu/include
1888:info:configure   /usr/local/include/Availability.h
1889:info:configure   /usr/local/include/AvailabilityInternal.h
1890:info:configure   /usr/local/include/_types
1891:info:configure   /usr/local/include/_types.h
1892:info:configure   /usr/local/include/_wctype.h
1893:info:configure   /usr/local/include/ac_nonexistent.h
1894:info:configure   /usr/local/include/alloca.h
1895:info:configure   /usr/local/include/ctype.h
1896:info:configure   /usr/local/include/dirent.h
1897:info:configure   /usr/local/include/dlfcn.h
1898:info:configure   /usr/local/include/errno.h
1899:info:configure   /usr/local/include/fcntl.h
1900:info:configure   /usr/local/include/float.h
1901:info:configure   /usr/local/include/gethostuuid.h
1902:info:configure   /usr/local/include/gethostuuid_private.h
1903:info:configure   /usr/local/include/i386
1904:info:configure   /usr/local/include/inttypes.h
1905:info:configure   /usr/local/include/libkern
1906:info:configure   /usr/local/include/libkern/i386
1907:info:configure   /usr/local/include/libutil.h
1908:info:configure   /usr/local/include/limits.h
1909:info:configure   /usr/local/include/mach/i386
1910:info:configure   /usr/local/include/machine
1911:info:configure   /usr/local/include/memory.h
1912:info:configure   /usr/local/include/minix
1913:info:configure   /usr/local/include/ncursesw
1914:info:configure   /usr/local/include/ncursesw.h
1915:info:configure   /usr/local/include/pthread
1916:info:configure   /usr/local/include/pthread.h
1917:info:configure   /usr/local/include/pthread_impl.h
1918:info:configure   /usr/local/include/pty.h
1919:info:configure   /usr/local/include/pwd.h
1920:info:configure   /usr/local/include/runetype.h
1921:info:configure   /usr/local/include/secure
1922:info:configure   /usr/local/include/signal.h
1923:info:configure   /usr/local/include/stdalign.h
1924:info:configure   /usr/local/include/stdarg.h
1925:info:configure   /usr/local/include/stdbool.h
1926:info:configure   /usr/local/include/stddef.h
1927:info:configure   /usr/local/include/stdint.h
1928:info:configure   /usr/local/include/stdio.h
1929:info:configure   /usr/local/include/stdlib.h
1930:info:configure   /usr/local/include/string.h
1931:info:configure   /usr/local/include/strings.h
1932:info:configure   /usr/local/include/sys
1933:info:configure   /usr/local/include/sys/_pthread
1934:info:configure   /usr/local/include/sys/_types
1935:info:configure   /usr/local/include/termios.h
1936:info:configure   /usr/local/include/time.h
1937:info:configure   /usr/local/include/unistd.h
1938:info:configure   /usr/local/include/util.h
1939:info:configure   /usr/local/include/utmp.h
1940:info:configure   /usr/local/include/uuid
1941:info:configure   /usr/local/include/wchar.h
1942:info:configure   /usr/local/lib/crt0.o
1943:info:configure   /usr/local/lib/libcache.dylib
1944:info:configure   /usr/local/lib/libcommonCrypto.dylib
1945:info:configure   /usr/local/lib/libcompiler_rt.dylib
1946:info:configure   /usr/local/lib/libcopyfile.dylib
1947:info:configure   /usr/local/lib/libcorecrypto.dylib
1948:info:configure   /usr/local/lib/libdispatch.dylib
1949:info:configure   /usr/local/lib/libdyld.dylib
1950:info:configure   /usr/local/lib/libkeymgr.dylib
1951:info:configure   /usr/local/lib/liblaunch.dylib
1952:info:configure   /usr/local/lib/libmacho.dylib
1953:info:configure   /usr/local/lib/libquarantine.dylib
1954:info:configure   /usr/local/lib/libremovefile.dylib
1955:info:configure   /usr/local/lib/librt.dylib
1956:info:configure   /usr/local/lib/libsystem_asl.dylib
1957:info:configure   /usr/local/lib/libsystem_blocks.dylib
1958:info:configure   /usr/local/lib/libsystem_c.dylib
1959:info:configure   /usr/local/lib/libsystem_configuration.dylib
1960:info:configure   /usr/local/lib/libsystem_coreservices.dylib
1961:info:configure   /usr/local/lib/libsystem_coretls.dylib
1962:info:configure   /usr/local/lib/libsystem_dnssd.dylib
1963:info:configure   /usr/local/lib/libsystem_info.dylib
1964:info:configure   /usr/local/lib/libsystem_kernel.dylib
1965:info:configure   /usr/local/lib/libsystem_m.dylib
1966:info:configure   /usr/local/lib/libsystem_malloc.dylib
1967:info:configure   /usr/local/lib/libsystem_network.dylib
1968:info:configure   /usr/local/lib/libsystem_networkextension.dylib
1969:info:configure   /usr/local/lib/libsystem_notify.dylib
1970:info:configure   /usr/local/lib/libsystem_platform.dylib
1971:info:configure   /usr/local/lib/libsystem_pthread.dylib
1972:info:configure   /usr/local/lib/libsystem_sandbox.dylib
1973:info:configure   /usr/local/lib/libsystem_secinit.dylib
1974:info:configure   /usr/local/lib/libsystem_stats.dylib
1975:info:configure   /usr/local/lib/libsystem_trace.dylib
1976:info:configure   /usr/local/lib/libunc.dylib
1977:info:configure   /usr/local/lib/libunwind.dylib
1978:info:configure   /usr/local/lib/libxpc.dylib
1979:info:configure   /usr/tmp
1980:info:configure   /usr/ucb/nm
1981:info:configure   /usr/xpg4/bin/ggrep
1982:info:configure   /usr/xpg4/bin/grep
1983:info:configure   /var/mail/macports
1984:warn:configure The following files inside the MacPorts prefix not installed by a port were accessed:
1985:msg:configure   /opt/local/lib/pkgconfig/mpich.pc
1986:msg:configure   /opt/local/lib/pkgconfig/openpa.pc
1987:debug:configure Privilege de-escalation not attempted as not running as root.
1988:debug:build build phase started at Thu Aug  6 09:57:31 MST 2015
1989:notice:build --->  Building crystfel
1990:debug:build Tracelib Sandbox is:
1991:debug:build    /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work=+
1992:debug:build    /Users/rkirian/work/git/macports/science/crystfel=+
1993:debug:build    /opt/local/var/macports/distfiles/crystfel=+
1994:debug:build    /bin=+
1995:debug:build    /sbin=+
1996:debug:build    /dev=+
1997:debug:build    /usr/bin=+
1998:debug:build    /usr/sbin=+
1999:debug:build    /usr/include=+
2000:debug:build    /usr/lib=+
2001:debug:build    /usr/libexec=+
2002:debug:build    /usr/share=+
2003:debug:build    /System/Library=+
2004:debug:build    /Library/Frameworks=-
2005:debug:build    /Library=+
2006:debug:build    /etc/passwd=+
2007:debug:build    /private/etc/passwd=+
2008:debug:build    /etc/groups=+
2009:debug:build    /private/etc/groups=+
2010:debug:build    /etc/localtime=+
2011:debug:build    /private/etc/localtime=+
2012:debug:build    /tmp=+
2013:debug:build    /var/tmp=+
2014:debug:build    /private/var/tmp=+
2015:debug:build    /var/folders=+
2016:debug:build    /private/var/folders=+
2017:debug:build    /var/empty=+
2018:debug:build    /private/var/empty=+
2019:debug:build    /var/run=+
2020:debug:build    /private/var/run=+
2021:debug:build    /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.tmp=+
2022:debug:build    /var/db/xcode_select_link=+
2023:debug:build    /private/var/db/xcode_select_link=+
2024:debug:build    /var/db/mds=+
2025:debug:build    /private/var/db/mds=+
2026:debug:build    /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist=+
2027:debug:build    /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/Library/Preferences/com.apple.dt.Xcode.plist=+
2028:debug:build    /Applications/Xcode.app=+
2029:debug:build    /var/db/launchd.db=+
2030:debug:build    /private/var/db/launchd.db=+
2031:debug:build    /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/.ccache=+
2032:debug:build    /opt/local/var/macports/build/.ccache=+
2033:debug:build    /opt/local=?
2034:debug:build Tracemode will respect recursively collected port dependencies: Xft2 atk bzip2 cairo db48 db_select expat fftw-3 fontconfig freetype gdk-pixbuf2 gettext glib2 gobject-introspection graphite2 gsl gtk2 harfbuzz hdf5 hicolor-icon-theme jasper jpeg libedit libffi libiconv libpixman libpng libtool libxml2 ncurses openssl pango pkgconfig py27-beaker py27-mako py27-markupsafe py27-setuptools python27 python2_select python_select shared-mime-info sqlite3 tiff xorg-compositeproto xorg-damageproto xorg-fixesproto xorg-inputproto xorg-kbproto xorg-libX11 xorg-libXau xorg-libXcomposite xorg-libXcursor xorg-libXdamage xorg-libXdmcp xorg-libXext xorg-libXfixes xorg-libXi xorg-libXinerama xorg-libXrandr xorg-libpthread-stubs xorg-libxcb xorg-randrproto xorg-renderproto xorg-xcb-proto xorg-xcb-util xorg-xextproto xorg-xineramaproto xorg-xproto xrender xz zlib
2035:debug:build Executing org.macports.build (crystfel)
2036:debug:build Environment:
2037CC_PRINT_OPTIONS='YES'
2038CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.CC_PRINT_OPTIONS'
2039CPATH='/opt/local/include'
2040LIBRARY_PATH='/opt/local/lib'
2041MACOSX_DEPLOYMENT_TARGET='10.10'
2042:debug:build Assembled command: 'cd "/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1" && /usr/bin/make -j12 -w all'
2043:debug:build Executing command line:  cd "/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1" && /usr/bin/make -j12 -w all
2044:info:build make: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1'
2045:info:build ./version.sh .
2046:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make  all-recursive
2047:info:build make[1]: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1'
2048:info:build Making all in lib
2049:info:build make[2]: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/lib'
2050:info:build rm -f c++defs.h-t c++defs.h && \
2051:info:build     sed -n -e '/_GL_CXXDEFS/,$p' \
2052:info:build       < ../build-aux/snippet/c++defs.h \
2053:info:build       > c++defs.h-t && \
2054:info:build     mv c++defs.h-t c++defs.h
2055:info:build rm -f arg-nonnull.h-t arg-nonnull.h && \
2056:info:build     sed -n -e '/GL_ARG_NONNULL/,$p' \
2057:info:build       < ../build-aux/snippet/arg-nonnull.h \
2058:info:build       > arg-nonnull.h-t && \
2059:info:build     mv arg-nonnull.h-t arg-nonnull.h
2060:info:build rm -f warn-on-use.h-t warn-on-use.h && \
2061:info:build     sed -n -e '/^.ifndef/,$p' \
2062:info:build       < ../build-aux/snippet/warn-on-use.h \
2063:info:build       > warn-on-use.h-t && \
2064:info:build     mv warn-on-use.h-t warn-on-use.h
2065:info:build ../build-aux/install-sh -c -d sys
2066:info:build ../build-aux/install-sh -c -d sys
2067:info:build rm -f pty.h-t pty.h && \
2068:info:build     { echo '/* DO NOT EDIT! GENERATED AUTOMATICALLY! */'; \
2069:info:build       sed -e 's|@''GUARD_PREFIX''@|GL|g' \
2070:info:build           -e 's|@''HAVE_PTY_H''@|0|g' \
2071:info:build           -e 's|@''INCLUDE_NEXT''@|include_next|g' \
2072:info:build           -e 's|@''PRAGMA_SYSTEM_HEADER''@|#pragma GCC system_header|g' \
2073:info:build           -e 's|@''PRAGMA_COLUMNS''@||g' \
2074:info:build           -e 's|@''NEXT_PTY_H''@|<pty.h>|g' \
2075:info:build           -e 's/@''GNULIB_FORKPTY''@/1/g' \
2076:info:build           -e 's/@''GNULIB_OPENPTY''@/1/g' \
2077:info:build           -e 's|@''HAVE_UTIL_H''@|1|g' \
2078:info:build           -e 's|@''HAVE_LIBUTIL_H''@|0|g' \
2079:info:build           -e 's|@''HAVE_FORKPTY''@|1|g' \
2080:info:build           -e 's|@''HAVE_OPENPTY''@|1|g' \
2081:info:build           -e 's|@''REPLACE_FORKPTY''@|1|g' \
2082:info:build           -e 's|@''REPLACE_OPENPTY''@|1|g' \
2083:info:build           -e '/definitions of _GL_FUNCDECL_RPL/r c++defs.h' \
2084:info:build           -e '/definition of _GL_WARN_ON_USE/r warn-on-use.h' \
2085:info:build           < ./pty.in.h; \
2086:info:build     } > pty.h-t && \
2087:info:build     mv pty.h-t pty.h
2088:info:build rm -f stdlib.h-t stdlib.h && \
2089:info:build     { echo '/* DO NOT EDIT! GENERATED AUTOMATICALLY! */' && \
2090:info:build       sed -e 's|@''GUARD_PREFIX''@|GL|g' \
2091:info:build           -e 's|@''INCLUDE_NEXT''@|include_next|g' \
2092:info:build           -e 's|@''PRAGMA_SYSTEM_HEADER''@|#pragma GCC system_header|g' \
2093:info:build           -e 's|@''PRAGMA_COLUMNS''@||g' \
2094:info:build           -e 's|@''NEXT_STDLIB_H''@|<stdlib.h>|g' \
2095:info:build           -e 's/@''GNULIB__EXIT''@/0/g' \
2096:info:build           -e 's/@''GNULIB_ATOLL''@/0/g' \
2097:info:build           -e 's/@''GNULIB_CALLOC_POSIX''@/0/g' \
2098:info:build           -e 's/@''GNULIB_CANONICALIZE_FILE_NAME''@/0/g' \
2099:info:build           -e 's/@''GNULIB_GETLOADAVG''@/0/g' \
2100:info:build           -e 's/@''GNULIB_GETSUBOPT''@/0/g' \
2101:info:build           -e 's/@''GNULIB_GRANTPT''@/0/g' \
2102:info:build           -e 's/@''GNULIB_MALLOC_POSIX''@/0/g' \
2103:info:build           -e 's/@''GNULIB_MBTOWC''@/0/g' \
2104:info:build           -e 's/@''GNULIB_MKDTEMP''@/0/g' \
2105:info:build           -e 's/@''GNULIB_MKOSTEMP''@/0/g' \
2106:info:build           -e 's/@''GNULIB_MKOSTEMPS''@/0/g' \
2107:info:build           -e 's/@''GNULIB_MKSTEMP''@/0/g' \
2108:info:build           -e 's/@''GNULIB_MKSTEMPS''@/0/g' \
2109:info:build           -e 's/@''GNULIB_POSIX_OPENPT''@/1/g' \
2110:info:build           -e 's/@''GNULIB_PTSNAME''@/0/g' \
2111:info:build           -e 's/@''GNULIB_PTSNAME_R''@/0/g' \
2112:info:build           -e 's/@''GNULIB_PUTENV''@/0/g' \
2113:info:build           -e 's/@''GNULIB_RANDOM''@/0/g' \
2114:info:build           -e 's/@''GNULIB_RANDOM_R''@/0/g' \
2115:info:build           -e 's/@''GNULIB_REALLOC_POSIX''@/0/g' \
2116:info:build           -e 's/@''GNULIB_REALPATH''@/0/g' \
2117:info:build           -e 's/@''GNULIB_RPMATCH''@/0/g' \
2118:info:build           -e 's/@''GNULIB_SECURE_GETENV''@/0/g' \
2119:info:build           -e 's/@''GNULIB_SETENV''@/0/g' \
2120:info:build           -e 's/@''GNULIB_STRTOD''@/0/g' \
2121:info:build           -e 's/@''GNULIB_STRTOLL''@/0/g' \
2122:info:build           -e 's/@''GNULIB_STRTOULL''@/0/g' \
2123:info:build           -e 's/@''GNULIB_SYSTEM_POSIX''@/0/g' \
2124:info:build           -e 's/@''GNULIB_UNLOCKPT''@/0/g' \
2125:info:build           -e 's/@''GNULIB_UNSETENV''@/0/g' \
2126:info:build           -e 's/@''GNULIB_WCTOMB''@/0/g' \
2127:info:build           < ./stdlib.in.h | \
2128:info:build       sed -e 's|@''HAVE__EXIT''@|1|g' \
2129:info:build           -e 's|@''HAVE_ATOLL''@|1|g' \
2130:info:build           -e 's|@''HAVE_CANONICALIZE_FILE_NAME''@|1|g' \
2131:info:build           -e 's|@''HAVE_DECL_GETLOADAVG''@|1|g' \
2132:info:build           -e 's|@''HAVE_GETSUBOPT''@|1|g' \
2133:info:build           -e 's|@''HAVE_GRANTPT''@|1|g' \
2134:info:build           -e 's|@''HAVE_MKDTEMP''@|1|g' \
2135:info:build           -e 's|@''HAVE_MKOSTEMP''@|1|g' \
2136:info:build           -e 's|@''HAVE_MKOSTEMPS''@|1|g' \
2137:info:build           -e 's|@''HAVE_MKSTEMP''@|1|g' \
2138:info:build           -e 's|@''HAVE_MKSTEMPS''@|1|g' \
2139:info:build           -e 's|@''HAVE_POSIX_OPENPT''@|1|g' \
2140:info:build           -e 's|@''HAVE_PTSNAME''@|1|g' \
2141:info:build           -e 's|@''HAVE_PTSNAME_R''@|1|g' \
2142:info:build           -e 's|@''HAVE_RANDOM''@|1|g' \
2143:info:build           -e 's|@''HAVE_RANDOM_H''@|1|g' \
2144:info:build           -e 's|@''HAVE_RANDOM_R''@|1|g' \
2145:info:build           -e 's|@''HAVE_REALPATH''@|1|g' \
2146:info:build           -e 's|@''HAVE_RPMATCH''@|1|g' \
2147:info:build           -e 's|@''HAVE_SECURE_GETENV''@|1|g' \
2148:info:build           -e 's|@''HAVE_DECL_SETENV''@|1|g' \
2149:info:build           -e 's|@''HAVE_STRTOD''@|1|g' \
2150:info:build           -e 's|@''HAVE_STRTOLL''@|1|g' \
2151:info:build           -e 's|@''HAVE_STRTOULL''@|1|g' \
2152:info:build           -e 's|@''HAVE_STRUCT_RANDOM_DATA''@|1|g' \
2153:info:build           -e 's|@''HAVE_SYS_LOADAVG_H''@|0|g' \
2154:info:build           -e 's|@''HAVE_UNLOCKPT''@|1|g' \
2155:info:build           -e 's|@''HAVE_DECL_UNSETENV''@|1|g' \
2156:info:build           -e 's|@''REPLACE_CALLOC''@|0|g' \
2157:info:build           -e 's|@''REPLACE_CANONICALIZE_FILE_NAME''@|0|g' \
2158:info:build           -e 's|@''REPLACE_MALLOC''@|0|g' \
2159:info:build           -e 's|@''REPLACE_MBTOWC''@|0|g' \
2160:info:build           -e 's|@''REPLACE_MKSTEMP''@|0|g' \
2161:info:build           -e 's|@''REPLACE_PTSNAME''@|0|g' \
2162:info:build           -e 's|@''REPLACE_PTSNAME_R''@|0|g' \
2163:info:build           -e 's|@''REPLACE_PUTENV''@|0|g' \
2164:info:build           -e 's|@''REPLACE_RANDOM_R''@|0|g' \
2165:info:build           -e 's|@''REPLACE_REALLOC''@|0|g' \
2166:info:build           -e 's|@''REPLACE_REALPATH''@|0|g' \
2167:info:build           -e 's|@''REPLACE_SETENV''@|0|g' \
2168:info:build           -e 's|@''REPLACE_STRTOD''@|0|g' \
2169:info:build           -e 's|@''REPLACE_UNSETENV''@|0|g' \
2170:info:build           -e 's|@''REPLACE_WCTOMB''@|0|g' \
2171:info:build           -e '/definitions of _GL_FUNCDECL_RPL/r c++defs.h' \
2172:info:build           -e '/definition of _Noreturn/r ../build-aux/snippet/_Noreturn.h' \
2173:info:build           -e '/definition of _GL_ARG_NONNULL/r arg-nonnull.h' \
2174:info:build           -e '/definition of _GL_WARN_ON_USE/r warn-on-use.h'; \
2175:info:build     } > stdlib.h-t && \
2176:info:build     mv stdlib.h-t stdlib.h
2177:info:build rm -f string.h-t string.h && \
2178:info:build     { echo '/* DO NOT EDIT! GENERATED AUTOMATICALLY! */' && \
2179:info:build       sed -e 's|@''GUARD_PREFIX''@|GL|g' \
2180:info:build           -e 's|@''INCLUDE_NEXT''@|include_next|g' \
2181:info:build           -e 's|@''PRAGMA_SYSTEM_HEADER''@|#pragma GCC system_header|g' \
2182:info:build           -e 's|@''PRAGMA_COLUMNS''@||g' \
2183:info:build           -e 's|@''NEXT_STRING_H''@|<string.h>|g' \
2184:info:build           -e 's/@''GNULIB_FFSL''@/0/g' \
2185:info:build           -e 's/@''GNULIB_FFSLL''@/0/g' \
2186:info:build           -e 's/@''GNULIB_MBSLEN''@/0/g' \
2187:info:build           -e 's/@''GNULIB_MBSNLEN''@/0/g' \
2188:info:build           -e 's/@''GNULIB_MBSCHR''@/0/g' \
2189:info:build           -e 's/@''GNULIB_MBSRCHR''@/0/g' \
2190:info:build           -e 's/@''GNULIB_MBSSTR''@/0/g' \
2191:info:build           -e 's/@''GNULIB_MBSCASECMP''@/0/g' \
2192:info:build           -e 's/@''GNULIB_MBSNCASECMP''@/0/g' \
2193:info:build           -e 's/@''GNULIB_MBSPCASECMP''@/0/g' \
2194:info:build           -e 's/@''GNULIB_MBSCASESTR''@/0/g' \
2195:info:build           -e 's/@''GNULIB_MBSCSPN''@/0/g' \
2196:info:build           -e 's/@''GNULIB_MBSPBRK''@/0/g' \
2197:info:build           -e 's/@''GNULIB_MBSSPN''@/0/g' \
2198:info:build           -e 's/@''GNULIB_MBSSEP''@/0/g' \
2199:info:build           -e 's/@''GNULIB_MBSTOK_R''@/0/g' \
2200:info:build           -e 's/@''GNULIB_MEMCHR''@/0/g' \
2201:info:build           -e 's/@''GNULIB_MEMMEM''@/0/g' \
2202:info:build           -e 's/@''GNULIB_MEMPCPY''@/0/g' \
2203:info:build           -e 's/@''GNULIB_MEMRCHR''@/0/g' \
2204:info:build           -e 's/@''GNULIB_RAWMEMCHR''@/0/g' \
2205:info:build           -e 's/@''GNULIB_STPCPY''@/0/g' \
2206:info:build           -e 's/@''GNULIB_STPNCPY''@/0/g' \
2207:info:build           -e 's/@''GNULIB_STRCHRNUL''@/0/g' \
2208:info:build           -e 's/@''GNULIB_STRDUP''@/0/g' \
2209:info:build           -e 's/@''GNULIB_STRNCAT''@/0/g' \
2210:info:build           -e 's/@''GNULIB_STRNDUP''@/1/g' \
2211:info:build           -e 's/@''GNULIB_STRNLEN''@/1/g' \
2212:info:build           -e 's/@''GNULIB_STRPBRK''@/0/g' \
2213:info:build           -e 's/@''GNULIB_STRSEP''@/0/g' \
2214:info:build           -e 's/@''GNULIB_STRSTR''@/0/g' \
2215:info:build           -e 's/@''GNULIB_STRCASESTR''@/0/g' \
2216:info:build           -e 's/@''GNULIB_STRTOK_R''@/0/g' \
2217:info:build           -e 's/@''GNULIB_STRERROR''@/0/g' \
2218:info:build           -e 's/@''GNULIB_STRERROR_R''@/0/g' \
2219:info:build           -e 's/@''GNULIB_STRSIGNAL''@/0/g' \
2220:info:build           -e 's/@''GNULIB_STRVERSCMP''@/0/g' \
2221:info:build           < ./string.in.h | \
2222:info:build       sed -e 's|@''HAVE_FFSL''@|1|g' \
2223:info:build           -e 's|@''HAVE_FFSLL''@|1|g' \
2224:info:build           -e 's|@''HAVE_MBSLEN''@|0|g' \
2225:info:build           -e 's|@''HAVE_MEMCHR''@|1|g' \
2226:info:build           -e 's|@''HAVE_DECL_MEMMEM''@|1|g' \
2227:info:build           -e 's|@''HAVE_MEMPCPY''@|1|g' \
2228:info:build           -e 's|@''HAVE_DECL_MEMRCHR''@|1|g' \
2229:info:build           -e 's|@''HAVE_RAWMEMCHR''@|1|g' \
2230:info:build           -e 's|@''HAVE_STPCPY''@|1|g' \
2231:info:build           -e 's|@''HAVE_STPNCPY''@|1|g' \
2232:info:build           -e 's|@''HAVE_STRCHRNUL''@|1|g' \
2233:info:build           -e 's|@''HAVE_DECL_STRDUP''@|1|g' \
2234:info:build           -e 's|@''HAVE_DECL_STRNDUP''@|1|g' \
2235:info:build           -e 's|@''HAVE_DECL_STRNLEN''@|1|g' \
2236:info:build           -e 's|@''HAVE_STRPBRK''@|1|g' \
2237:info:build           -e 's|@''HAVE_STRSEP''@|1|g' \
2238:info:build           -e 's|@''HAVE_STRCASESTR''@|1|g' \
2239:info:build           -e 's|@''HAVE_DECL_STRTOK_R''@|1|g' \
2240:info:build           -e 's|@''HAVE_DECL_STRERROR_R''@|1|g' \
2241:info:build           -e 's|@''HAVE_DECL_STRSIGNAL''@|1|g' \
2242:info:build           -e 's|@''HAVE_STRVERSCMP''@|1|g' \
2243:info:build           -e 's|@''REPLACE_STPNCPY''@|0|g' \
2244:info:build           -e 's|@''REPLACE_MEMCHR''@|0|g' \
2245:info:build           -e 's|@''REPLACE_MEMMEM''@|0|g' \
2246:info:build           -e 's|@''REPLACE_STRCASESTR''@|0|g' \
2247:info:build           -e 's|@''REPLACE_STRCHRNUL''@|0|g' \
2248:info:build           -e 's|@''REPLACE_STRDUP''@|0|g' \
2249:info:build           -e 's|@''REPLACE_STRSTR''@|0|g' \
2250:info:build           -e 's|@''REPLACE_STRERROR''@|0|g' \
2251:info:build           -e 's|@''REPLACE_STRERROR_R''@|0|g' \
2252:info:build           -e 's|@''REPLACE_STRNCAT''@|0|g' \
2253:info:build           -e 's|@''REPLACE_STRNDUP''@|0|g' \
2254:info:build           -e 's|@''REPLACE_STRNLEN''@|0|g' \
2255:info:build           -e 's|@''REPLACE_STRSIGNAL''@|0|g' \
2256:info:build           -e 's|@''REPLACE_STRTOK_R''@|0|g' \
2257:info:build           -e 's|@''UNDEFINE_STRTOK_R''@|0|g' \
2258:info:build           -e '/definitions of _GL_FUNCDECL_RPL/r c++defs.h' \
2259:info:build           -e '/definition of _GL_ARG_NONNULL/r arg-nonnull.h' \
2260:info:build           -e '/definition of _GL_WARN_ON_USE/r warn-on-use.h'; \
2261:info:build           < ./string.in.h; \
2262:info:build     } > string.h-t && \
2263:info:build     mv string.h-t string.h
2264:info:build ../build-aux/install-sh -c -d sys
2265:info:build ../build-aux/install-sh -c -d sys
2266:info:build rm -f unistd.h-t unistd.h && \
2267:info:build     { echo '/* DO NOT EDIT! GENERATED AUTOMATICALLY! */'; \
2268:info:build       sed -e 's|@''GUARD_PREFIX''@|GL|g' \
2269:info:build           -e 's|@''HAVE_UNISTD_H''@|1|g' \
2270:info:build           -e 's|@''INCLUDE_NEXT''@|include_next|g' \
2271:info:build           -e 's|@''PRAGMA_SYSTEM_HEADER''@|#pragma GCC system_header|g' \
2272:info:build           -e 's|@''PRAGMA_COLUMNS''@||g' \
2273:info:build           -e 's|@''NEXT_UNISTD_H''@|<unistd.h>|g' \
2274:info:build           -e 's|@''WINDOWS_64_BIT_OFF_T''@|0|g' \
2275:info:build           -e 's/@''GNULIB_CHDIR''@/0/g' \
2276:info:build           -e 's/@''GNULIB_CHOWN''@/0/g' \
2277:info:build           -e 's/@''GNULIB_CLOSE''@/0/g' \
2278:info:build           -e 's/@''GNULIB_DUP''@/0/g' \
2279:info:build           -e 's/@''GNULIB_DUP2''@/0/g' \
2280:info:build           -e 's/@''GNULIB_DUP3''@/0/g' \
2281:info:build           -e 's/@''GNULIB_ENVIRON''@/0/g' \
2282:info:build           -e 's/@''GNULIB_EUIDACCESS''@/0/g' \
2283:info:build           -e 's/@''GNULIB_FACCESSAT''@/0/g' \
2284:info:build           -e 's/@''GNULIB_FCHDIR''@/0/g' \
2285:info:build           -e 's/@''GNULIB_FCHOWNAT''@/0/g' \
2286:info:build           -e 's/@''GNULIB_FDATASYNC''@/0/g' \
2287:info:build           -e 's/@''GNULIB_FSYNC''@/0/g' \
2288:info:build           -e 's/@''GNULIB_FTRUNCATE''@/0/g' \
2289:info:build           -e 's/@''GNULIB_GETCWD''@/0/g' \
2290:info:build           -e 's/@''GNULIB_GETDOMAINNAME''@/0/g' \
2291:info:build           -e 's/@''GNULIB_GETDTABLESIZE''@/0/g' \
2292:info:build           -e 's/@''GNULIB_GETGROUPS''@/0/g' \
2293:info:build           -e 's/@''GNULIB_GETHOSTNAME''@/0/g' \
2294:info:build           -e 's/@''GNULIB_GETLOGIN''@/0/g' \
2295:info:build           -e 's/@''GNULIB_GETLOGIN_R''@/0/g' \
2296:info:build           -e 's/@''GNULIB_GETPAGESIZE''@/0/g' \
2297:info:build           -e 's/@''GNULIB_GETUSERSHELL''@/0/g' \
2298:info:build           -e 's/@''GNULIB_GROUP_MEMBER''@/0/g' \
2299:info:build           -e 's/@''GNULIB_ISATTY''@/0/g' \
2300:info:build           -e 's/@''GNULIB_LCHOWN''@/0/g' \
2301:info:build           -e 's/@''GNULIB_LINK''@/0/g' \
2302:info:build           -e 's/@''GNULIB_LINKAT''@/0/g' \
2303:info:build           -e 's/@''GNULIB_LSEEK''@/0/g' \
2304:info:build           -e 's/@''GNULIB_PIPE''@/0/g' \
2305:info:build           -e 's/@''GNULIB_PIPE2''@/0/g' \
2306:info:build           -e 's/@''GNULIB_PREAD''@/0/g' \
2307:info:build           -e 's/@''GNULIB_PWRITE''@/0/g' \
2308:info:build           -e 's/@''GNULIB_READ''@/0/g' \
2309:info:build           -e 's/@''GNULIB_READLINK''@/0/g' \
2310:info:build           -e 's/@''GNULIB_READLINKAT''@/0/g' \
2311:info:build           -e 's/@''GNULIB_RMDIR''@/0/g' \
2312:info:build           -e 's/@''GNULIB_SETHOSTNAME''@/0/g' \
2313:info:build           -e 's/@''GNULIB_SLEEP''@/0/g' \
2314:info:build           -e 's/@''GNULIB_SYMLINK''@/0/g' \
2315:info:build           -e 's/@''GNULIB_SYMLINKAT''@/0/g' \
2316:info:build           -e 's/@''GNULIB_TTYNAME_R''@/0/g' \
2317:info:build           -e 's/@''GNULIB_UNISTD_H_GETOPT''@/0/g' \
2318:info:build           -e 's/@''GNULIB_UNISTD_H_NONBLOCKING''@/0/g' \
2319:info:build           -e 's/@''GNULIB_UNISTD_H_SIGPIPE''@/0/g' \
2320:info:build           -e 's/@''GNULIB_UNLINK''@/0/g' \
2321:info:build           -e 's/@''GNULIB_UNLINKAT''@/0/g' \
2322:info:build           -e 's/@''GNULIB_USLEEP''@/0/g' \
2323:info:build           -e 's/@''GNULIB_WRITE''@/0/g' \
2324:info:build           < ./unistd.in.h | \
2325:info:build       sed -e 's|@''HAVE_CHOWN''@|1|g' \
2326:info:build           -e 's|@''HAVE_DUP2''@|1|g' \
2327:info:build           -e 's|@''HAVE_DUP3''@|1|g' \
2328:info:build           -e 's|@''HAVE_EUIDACCESS''@|1|g' \
2329:info:build           -e 's|@''HAVE_FACCESSAT''@|1|g' \
2330:info:build           -e 's|@''HAVE_FCHDIR''@|1|g' \
2331:info:build           -e 's|@''HAVE_FCHOWNAT''@|1|g' \
2332:info:build           -e 's|@''HAVE_FDATASYNC''@|1|g' \
2333:info:build           -e 's|@''HAVE_FSYNC''@|1|g' \
2334:info:build           -e 's|@''HAVE_FTRUNCATE''@|1|g' \
2335:info:build           -e 's|@''HAVE_GETDTABLESIZE''@|1|g' \
2336:info:build           -e 's|@''HAVE_GETGROUPS''@|1|g' \
2337:info:build           -e 's|@''HAVE_GETHOSTNAME''@|1|g' \
2338:info:build           -e 's|@''HAVE_GETLOGIN''@|1|g' \
2339:info:build           -e 's|@''HAVE_GETPAGESIZE''@|1|g' \
2340:info:build           -e 's|@''HAVE_GROUP_MEMBER''@|1|g' \
2341:info:build           -e 's|@''HAVE_LCHOWN''@|1|g' \
2342:info:build           -e 's|@''HAVE_LINK''@|1|g' \
2343:info:build           -e 's|@''HAVE_LINKAT''@|1|g' \
2344:info:build           -e 's|@''HAVE_PIPE''@|1|g' \
2345:info:build           -e 's|@''HAVE_PIPE2''@|1|g' \
2346:info:build           -e 's|@''HAVE_PREAD''@|1|g' \
2347:info:build           -e 's|@''HAVE_PWRITE''@|1|g' \
2348:info:build           -e 's|@''HAVE_READLINK''@|1|g' \
2349:info:build           -e 's|@''HAVE_READLINKAT''@|1|g' \
2350:info:build           -e 's|@''HAVE_SETHOSTNAME''@|1|g' \
2351:info:build           -e 's|@''HAVE_SLEEP''@|1|g' \
2352:info:build           -e 's|@''HAVE_SYMLINK''@|1|g' \
2353:info:build           -e 's|@''HAVE_SYMLINKAT''@|1|g' \
2354:info:build           -e 's|@''HAVE_UNLINKAT''@|1|g' \
2355:info:build           -e 's|@''HAVE_USLEEP''@|1|g' \
2356:info:build           -e 's|@''HAVE_DECL_ENVIRON''@|1|g' \
2357:info:build           -e 's|@''HAVE_DECL_FCHDIR''@|1|g' \
2358:info:build           -e 's|@''HAVE_DECL_FDATASYNC''@|1|g' \
2359:info:build           -e 's|@''HAVE_DECL_GETDOMAINNAME''@|1|g' \
2360:info:build           -e 's|@''HAVE_DECL_GETLOGIN_R''@|1|g' \
2361:info:build           -e 's|@''HAVE_DECL_GETPAGESIZE''@|1|g' \
2362:info:build           -e 's|@''HAVE_DECL_GETUSERSHELL''@|1|g' \
2363:info:build           -e 's|@''HAVE_DECL_SETHOSTNAME''@|1|g' \
2364:info:build           -e 's|@''HAVE_DECL_TTYNAME_R''@|1|g' \
2365:info:build           -e 's|@''HAVE_OS_H''@|0|g' \
2366:info:build           -e 's|@''HAVE_SYS_PARAM_H''@|0|g' \
2367:info:build       | \
2368:info:build       sed -e 's|@''REPLACE_CHOWN''@|0|g' \
2369:info:build           -e 's|@''REPLACE_CLOSE''@|0|g' \
2370:info:build           -e 's|@''REPLACE_DUP''@|0|g' \
2371:info:build           -e 's|@''REPLACE_DUP2''@|0|g' \
2372:info:build           -e 's|@''REPLACE_FCHOWNAT''@|0|g' \
2373:info:build           -e 's|@''REPLACE_FTRUNCATE''@|0|g' \
2374:info:build           -e 's|@''REPLACE_GETCWD''@|0|g' \
2375:info:build           -e 's|@''REPLACE_GETDOMAINNAME''@|0|g' \
2376:info:build           -e 's|@''REPLACE_GETDTABLESIZE''@|0|g' \
2377:info:build           -e 's|@''REPLACE_GETLOGIN_R''@|0|g' \
2378:info:build           -e 's|@''REPLACE_GETGROUPS''@|0|g' \
2379:info:build           -e 's|@''REPLACE_GETPAGESIZE''@|0|g' \
2380:info:build           -e 's|@''REPLACE_ISATTY''@|0|g' \
2381:info:build           -e 's|@''REPLACE_LCHOWN''@|0|g' \
2382:info:build           -e 's|@''REPLACE_LINK''@|0|g' \
2383:info:build           -e 's|@''REPLACE_LINKAT''@|0|g' \
2384:info:build           -e 's|@''REPLACE_LSEEK''@|0|g' \
2385:info:build           -e 's|@''REPLACE_PREAD''@|0|g' \
2386:info:build           -e 's|@''REPLACE_PWRITE''@|0|g' \
2387:info:build           -e 's|@''REPLACE_READ''@|0|g' \
2388:info:build           -e 's|@''REPLACE_READLINK''@|0|g' \
2389:info:build           -e 's|@''REPLACE_RMDIR''@|0|g' \
2390:info:build           -e 's|@''REPLACE_SLEEP''@|0|g' \
2391:info:build           -e 's|@''REPLACE_SYMLINK''@|0|g' \
2392:info:build           -e 's|@''REPLACE_TTYNAME_R''@|0|g' \
2393:info:build           -e 's|@''REPLACE_UNLINK''@|0|g' \
2394:info:build           -e 's|@''REPLACE_UNLINKAT''@|0|g' \
2395:info:build           -e 's|@''REPLACE_USLEEP''@|0|g' \
2396:info:build           -e 's|@''REPLACE_WRITE''@|0|g' \
2397:info:build           -e 's|@''UNISTD_H_HAVE_WINSOCK2_H''@|0|g' \
2398:info:build           -e 's|@''UNISTD_H_HAVE_WINSOCK2_H_AND_USE_SOCKETS''@|0|g' \
2399:info:build           -e '/definitions of _GL_FUNCDECL_RPL/r c++defs.h' \
2400:info:build           -e '/definition of _GL_ARG_NONNULL/r arg-nonnull.h' \
2401:info:build           -e '/definition of _GL_WARN_ON_USE/r warn-on-use.h'; \
2402:info:build     } > unistd.h-t && \
2403:info:build     mv unistd.h-t unistd.h
2404:info:build rm -f fcntl.h-t fcntl.h && \
2405:info:build     { echo '/* DO NOT EDIT! GENERATED AUTOMATICALLY! */'; \
2406:info:build       sed -e 's|@''GUARD_PREFIX''@|GL|g' \
2407:info:build           -e 's|@''INCLUDE_NEXT''@|include_next|g' \
2408:info:build           -e 's|@''PRAGMA_SYSTEM_HEADER''@|#pragma GCC system_header|g' \
2409:info:build           -e 's|@''PRAGMA_COLUMNS''@||g' \
2410:info:build           -e 's|@''NEXT_FCNTL_H''@|<fcntl.h>|g' \
2411:info:build           -e 's/@''GNULIB_FCNTL''@/0/g' \
2412:info:build           -e 's/@''GNULIB_NONBLOCKING''@/0/g' \
2413:info:build           -e 's/@''GNULIB_OPEN''@/0/g' \
2414:info:build           -e 's/@''GNULIB_OPENAT''@/0/g' \
2415:info:build           -e 's|@''HAVE_FCNTL''@|1|g' \
2416:info:build           -e 's|@''HAVE_OPENAT''@|1|g' \
2417:info:build           -e 's|@''REPLACE_FCNTL''@|0|g' \
2418:info:build           -e 's|@''REPLACE_OPEN''@|0|g' \
2419:info:build           -e 's|@''REPLACE_OPENAT''@|0|g' \
2420:info:build           -e '/definitions of _GL_FUNCDECL_RPL/r c++defs.h' \
2421:info:build           -e '/definition of _GL_ARG_NONNULL/r arg-nonnull.h' \
2422:info:build           -e '/definition of _GL_WARN_ON_USE/r warn-on-use.h' \
2423:info:build           < ./fcntl.in.h; \
2424:info:build     } > fcntl.h-t && \
2425:info:build     mv fcntl.h-t fcntl.h
2426:info:build mkdir: sys: File exists
2427:info:build rm -f sys/types.h-t sys/types.h && \
2428:info:build     { echo '/* DO NOT EDIT! GENERATED AUTOMATICALLY! */'; \
2429:info:build       sed -e 's|@''GUARD_PREFIX''@|GL|g' \
2430:info:build           -e 's|@''INCLUDE_NEXT''@|include_next|g' \
2431:info:build           -e 's|@''PRAGMA_SYSTEM_HEADER''@|#pragma GCC system_header|g' \
2432:info:build           -e 's|@''PRAGMA_COLUMNS''@||g' \
2433:info:build           -e 's|@''NEXT_SYS_TYPES_H''@|<sys/types.h>|g' \
2434:info:build           -e 's|@''WINDOWS_64_BIT_OFF_T''@|0|g' \
2435:info:build           < ./sys_types.in.h; \
2436:info:build     } > sys/types.h-t && \
2437:info:build     mv sys/types.h-t sys/types.h
2438:info:build rm -f sys/uio.h-t sys/uio.h && \
2439:info:build     { echo '/* DO NOT EDIT! GENERATED AUTOMATICALLY! */'; \
2440:info:build       sed -e 's|@''GUARD_PREFIX''@|GL|g' \
2441:info:build           -e 's|@''INCLUDE_NEXT''@|include_next|g' \
2442:info:build           -e 's|@''PRAGMA_SYSTEM_HEADER''@|#pragma GCC system_header|g' \
2443:info:build           -e 's|@''PRAGMA_COLUMNS''@||g' \
2444:info:build           -e 's|@''NEXT_SYS_UIO_H''@|<sys/uio.h>|g' \
2445:info:build           -e 's|@''HAVE_SYS_UIO_H''@|1|g' \
2446:info:build           < ./sys_uio.in.h; \
2447:info:build     } > sys/uio.h-t && \
2448:info:build     mv -f sys/uio.h-t sys/uio.h
2449:info:build rm -f sys/socket.h-t sys/socket.h && \
2450:info:build     { echo '/* DO NOT EDIT! GENERATED AUTOMATICALLY! */'; \
2451:info:build       sed -e 's|@''GUARD_PREFIX''@|GL|g' \
2452:info:build           -e 's|@''INCLUDE_NEXT''@|include_next|g' \
2453:info:build           -e 's|@''PRAGMA_SYSTEM_HEADER''@|#pragma GCC system_header|g' \
2454:info:build           -e 's|@''PRAGMA_COLUMNS''@||g' \
2455:info:build           -e 's|@''NEXT_SYS_SOCKET_H''@|<sys/socket.h>|g' \
2456:info:build           -e 's|@''HAVE_SYS_SOCKET_H''@|1|g' \
2457:info:build           -e 's/@''GNULIB_CLOSE''@/0/g' \
2458:info:build           -e 's/@''GNULIB_SOCKET''@/0/g' \
2459:info:build           -e 's/@''GNULIB_CONNECT''@/0/g' \
2460:info:build           -e 's/@''GNULIB_ACCEPT''@/0/g' \
2461:info:build           -e 's/@''GNULIB_BIND''@/0/g' \
2462:info:build           -e 's/@''GNULIB_GETPEERNAME''@/0/g' \
2463:info:build           -e 's/@''GNULIB_GETSOCKNAME''@/0/g' \
2464:info:build           -e 's/@''GNULIB_GETSOCKOPT''@/0/g' \
2465:info:build           -e 's/@''GNULIB_LISTEN''@/0/g' \
2466:info:build           -e 's/@''GNULIB_RECV''@/0/g' \
2467:info:build           -e 's/@''GNULIB_SEND''@/0/g' \
2468:info:build           -e 's/@''GNULIB_RECVFROM''@/0/g' \
2469:info:build           -e 's/@''GNULIB_SENDTO''@/0/g' \
2470:info:build           -e 's/@''GNULIB_SETSOCKOPT''@/0/g' \
2471:info:build           -e 's/@''GNULIB_SHUTDOWN''@/0/g' \
2472:info:build           -e 's/@''GNULIB_ACCEPT4''@/0/g' \
2473:info:build           -e 's|@''HAVE_WINSOCK2_H''@|0|g' \
2474:info:build           -e 's|@''HAVE_WS2TCPIP_H''@|0|g' \
2475:info:build           -e 's|@''HAVE_STRUCT_SOCKADDR_STORAGE''@|1|g' \
2476:info:build           -e 's|@''HAVE_STRUCT_SOCKADDR_STORAGE_SS_FAMILY''@|1|g' \
2477:info:build           -e 's|@''HAVE_SA_FAMILY_T''@|1|g' \
2478:info:build           -e 's|@''HAVE_ACCEPT4''@|1|g' \
2479:info:build           -e '/definitions of _GL_FUNCDECL_RPL/r c++defs.h' \
2480:info:build           -e '/definition of _GL_ARG_NONNULL/r arg-nonnull.h' \
2481:info:build           -e '/definition of _GL_WARN_ON_USE/r warn-on-use.h' \
2482:info:build           < ./sys_socket.in.h; \
2483:info:build     } > sys/socket.h-t && \
2484:info:build     mv -f sys/socket.h-t sys/socket.h
2485:info:build rm -f sys/ioctl.h-t sys/ioctl.h && \
2486:info:build     { echo '/* DO NOT EDIT! GENERATED AUTOMATICALLY! */'; \
2487:info:build       sed -e 's|@''GUARD_PREFIX''@|GL|g' \
2488:info:build           -e 's|@''HAVE_SYS_IOCTL_H''@|1|g' \
2489:info:build           -e 's|@''INCLUDE_NEXT''@|include_next|g' \
2490:info:build           -e 's|@''PRAGMA_SYSTEM_HEADER''@|#pragma GCC system_header|g' \
2491:info:build           -e 's|@''PRAGMA_COLUMNS''@||g' \
2492:info:build           -e 's|@''NEXT_SYS_IOCTL_H''@|<sys/ioctl.h>|g' \
2493:info:build           -e 's/@''GNULIB_IOCTL''@/1/g' \
2494:info:build           -e 's|@''SYS_IOCTL_H_HAVE_WINSOCK2_H''@|0|g' \
2495:info:build           -e 's|@''SYS_IOCTL_H_HAVE_WINSOCK2_H_AND_USE_SOCKETS''@|0|g' \
2496:info:build           -e 's|@''REPLACE_IOCTL''@|1|g' \
2497:info:build           -e '/definitions of _GL_FUNCDECL_RPL/r c++defs.h' \
2498:info:build           -e '/definition of _GL_WARN_ON_USE/r warn-on-use.h' \
2499:info:build           < ./sys_ioctl.in.h; \
2500:info:build     } > sys/ioctl.h-t && \
2501:info:build     mv sys/ioctl.h-t sys/ioctl.h
2502:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make  all-recursive
2503:info:build make[3]: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/lib'
2504:info:build make[4]: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/lib'
2505:info:build depbase=`echo fd-hook.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2506:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..   -I/opt/local/include  -pipe -Os -arch x86_64 -MT fd-hook.lo -MD -MP -MF $depbase.Tpo -c -o fd-hook.lo fd-hook.c &&\
2507:info:build     mv -f $depbase.Tpo $depbase.Plo
2508:info:build depbase=`echo sys_socket.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2509:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..   -I/opt/local/include  -pipe -Os -arch x86_64 -MT sys_socket.lo -MD -MP -MF $depbase.Tpo -c -o sys_socket.lo sys_socket.c &&\
2510:info:build     mv -f $depbase.Tpo $depbase.Plo
2511:info:build depbase=`echo unistd.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2512:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..   -I/opt/local/include  -pipe -Os -arch x86_64 -MT unistd.lo -MD -MP -MF $depbase.Tpo -c -o unistd.lo unistd.c &&\
2513:info:build     mv -f $depbase.Tpo $depbase.Plo
2514:info:build depbase=`echo forkpty.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2515:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..   -I/opt/local/include  -pipe -Os -arch x86_64 -MT forkpty.lo -MD -MP -MF $depbase.Tpo -c -o forkpty.lo forkpty.c &&\
2516:info:build     mv -f $depbase.Tpo $depbase.Plo
2517:info:build depbase=`echo ioctl.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2518:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..   -I/opt/local/include  -pipe -Os -arch x86_64 -MT ioctl.lo -MD -MP -MF $depbase.Tpo -c -o ioctl.lo ioctl.c &&\
2519:info:build     mv -f $depbase.Tpo $depbase.Plo
2520:info:build depbase=`echo openpty.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2521:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..   -I/opt/local/include  -pipe -Os -arch x86_64 -MT openpty.lo -MD -MP -MF $depbase.Tpo -c -o openpty.lo openpty.c &&\
2522:info:build     mv -f $depbase.Tpo $depbase.Plo
2523:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -pipe -Os -arch x86_64 -MT sys_socket.lo -MD -MP -MF .deps/sys_socket.Tpo -c sys_socket.c  -fno-common -DPIC -o .libs/sys_socket.o
2524:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -pipe -Os -arch x86_64 -MT fd-hook.lo -MD -MP -MF .deps/fd-hook.Tpo -c fd-hook.c  -fno-common -DPIC -o .libs/fd-hook.o
2525:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -pipe -Os -arch x86_64 -MT forkpty.lo -MD -MP -MF .deps/forkpty.Tpo -c forkpty.c  -fno-common -DPIC -o .libs/forkpty.o
2526:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -pipe -Os -arch x86_64 -MT unistd.lo -MD -MP -MF .deps/unistd.Tpo -c unistd.c  -fno-common -DPIC -o .libs/unistd.o
2527:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -pipe -Os -arch x86_64 -MT openpty.lo -MD -MP -MF .deps/openpty.Tpo -c openpty.c  -fno-common -DPIC -o .libs/openpty.o
2528:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -pipe -Os -arch x86_64 -MT ioctl.lo -MD -MP -MF .deps/ioctl.Tpo -c ioctl.c  -fno-common -DPIC -o .libs/ioctl.o
2529:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -pipe -Os -arch x86_64 -MT sys_socket.lo -MD -MP -MF .deps/sys_socket.Tpo -c sys_socket.c -o sys_socket.o >/dev/null 2>&1
2530:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -pipe -Os -arch x86_64 -MT fd-hook.lo -MD -MP -MF .deps/fd-hook.Tpo -c fd-hook.c -o fd-hook.o >/dev/null 2>&1
2531:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -pipe -Os -arch x86_64 -MT forkpty.lo -MD -MP -MF .deps/forkpty.Tpo -c forkpty.c -o forkpty.o >/dev/null 2>&1
2532:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -pipe -Os -arch x86_64 -MT unistd.lo -MD -MP -MF .deps/unistd.Tpo -c unistd.c -o unistd.o >/dev/null 2>&1
2533:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -pipe -Os -arch x86_64 -MT openpty.lo -MD -MP -MF .deps/openpty.Tpo -c openpty.c -o openpty.o >/dev/null 2>&1
2534:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -pipe -Os -arch x86_64 -MT ioctl.lo -MD -MP -MF .deps/ioctl.Tpo -c ioctl.c -o ioctl.o >/dev/null 2>&1
2535:info:build /bin/sh ../libtool  --tag=CC   --mode=link /usr/bin/clang  -pipe -Os -arch x86_64  -no-undefined  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o libgnu.la  fd-hook.lo sys_socket.lo unistd.lo forkpty.lo ioctl.lo openpty.lo
2536:info:build libtool: link: ar cru .libs/libgnu.a .libs/fd-hook.o .libs/sys_socket.o .libs/unistd.o .libs/forkpty.o .libs/ioctl.o .libs/openpty.o
2537:info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libgnu.a(fd-hook.o) has no symbols
2538:info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libgnu.a(sys_socket.o) has no symbols
2539:info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libgnu.a(unistd.o) has no symbols
2540:info:build libtool: link: ranlib .libs/libgnu.a
2541:info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libgnu.a(fd-hook.o) has no symbols
2542:info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libgnu.a(sys_socket.o) has no symbols
2543:info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libgnu.a(unistd.o) has no symbols
2544:info:build libtool: link: ( cd ".libs" && rm -f "libgnu.la" && ln -s "../libgnu.la" "libgnu.la" )
2545:info:build make[4]: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/lib'
2546:info:build make[3]: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/lib'
2547:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/lib'
2548:info:build Making all in doc/reference/libcrystfel
2549:info:build make[2]: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/doc/reference/libcrystfel'
2550:info:build make[2]: Nothing to be done for `all'.
2551:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/doc/reference/libcrystfel'
2552:info:build Making all in libcrystfel
2553:info:build make[2]: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/libcrystfel'
2554:info:build depbase=`echo src/reflist.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2555:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/reflist.lo -MD -MP -MF $depbase.Tpo -c -o src/reflist.lo src/reflist.c &&\
2556:info:build     mv -f $depbase.Tpo $depbase.Plo
2557:info:build depbase=`echo src/utils.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2558:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/utils.lo -MD -MP -MF $depbase.Tpo -c -o src/utils.lo src/utils.c &&\
2559:info:build     mv -f $depbase.Tpo $depbase.Plo
2560:info:build depbase=`echo src/cell.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2561:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/cell.lo -MD -MP -MF $depbase.Tpo -c -o src/cell.lo src/cell.c &&\
2562:info:build     mv -f $depbase.Tpo $depbase.Plo
2563:info:build depbase=`echo src/detector.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2564:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/detector.lo -MD -MP -MF $depbase.Tpo -c -o src/detector.lo src/detector.c &&\
2565:info:build     mv -f $depbase.Tpo $depbase.Plo
2566:info:build depbase=`echo src/thread-pool.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2567:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/thread-pool.lo -MD -MP -MF $depbase.Tpo -c -o src/thread-pool.lo src/thread-pool.c &&\
2568:info:build     mv -f $depbase.Tpo $depbase.Plo
2569:info:build depbase=`echo src/image.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2570:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/image.lo -MD -MP -MF $depbase.Tpo -c -o src/image.lo src/image.c &&\
2571:info:build     mv -f $depbase.Tpo $depbase.Plo
2572:info:build depbase=`echo src/hdf5-file.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2573:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/hdf5-file.lo -MD -MP -MF $depbase.Tpo -c -o src/hdf5-file.lo src/hdf5-file.c &&\
2574:info:build     mv -f $depbase.Tpo $depbase.Plo
2575:info:build depbase=`echo src/geometry.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2576:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/geometry.lo -MD -MP -MF $depbase.Tpo -c -o src/geometry.lo src/geometry.c &&\
2577:info:build     mv -f $depbase.Tpo $depbase.Plo
2578:info:build depbase=`echo src/statistics.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2579:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/statistics.lo -MD -MP -MF $depbase.Tpo -c -o src/statistics.lo src/statistics.c &&\
2580:info:build     mv -f $depbase.Tpo $depbase.Plo
2581:info:build depbase=`echo src/symmetry.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2582:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/symmetry.lo -MD -MP -MF $depbase.Tpo -c -o src/symmetry.lo src/symmetry.c &&\
2583:info:build     mv -f $depbase.Tpo $depbase.Plo
2584:info:build depbase=`echo src/stream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2585:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/stream.lo -MD -MP -MF $depbase.Tpo -c -o src/stream.lo src/stream.c &&\
2586:info:build     mv -f $depbase.Tpo $depbase.Plo
2587:info:build depbase=`echo src/peaks.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2588:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/peaks.lo -MD -MP -MF $depbase.Tpo -c -o src/peaks.lo src/peaks.c &&\
2589:info:build     mv -f $depbase.Tpo $depbase.Plo
2590:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/reflist.lo -MD -MP -MF src/.deps/reflist.Tpo -c src/reflist.c  -fno-common -DPIC -o src/.libs/reflist.o
2591:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/image.lo -MD -MP -MF src/.deps/image.Tpo -c src/image.c  -fno-common -DPIC -o src/.libs/image.o
2592:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/cell.lo -MD -MP -MF src/.deps/cell.Tpo -c src/cell.c  -fno-common -DPIC -o src/.libs/cell.o
2593:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/detector.lo -MD -MP -MF src/.deps/detector.Tpo -c src/detector.c  -fno-common -DPIC -o src/.libs/detector.o
2594:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/hdf5-file.lo -MD -MP -MF src/.deps/hdf5-file.Tpo -c src/hdf5-file.c  -fno-common -DPIC -o src/.libs/hdf5-file.o
2595:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/utils.lo -MD -MP -MF src/.deps/utils.Tpo -c src/utils.c  -fno-common -DPIC -o src/.libs/utils.o
2596:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/thread-pool.lo -MD -MP -MF src/.deps/thread-pool.Tpo -c src/thread-pool.c  -fno-common -DPIC -o src/.libs/thread-pool.o
2597:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/statistics.lo -MD -MP -MF src/.deps/statistics.Tpo -c src/statistics.c  -fno-common -DPIC -o src/.libs/statistics.o
2598:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/stream.lo -MD -MP -MF src/.deps/stream.Tpo -c src/stream.c  -fno-common -DPIC -o src/.libs/stream.o
2599:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/geometry.lo -MD -MP -MF src/.deps/geometry.Tpo -c src/geometry.c  -fno-common -DPIC -o src/.libs/geometry.o
2600:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/symmetry.lo -MD -MP -MF src/.deps/symmetry.Tpo -c src/symmetry.c  -fno-common -DPIC -o src/.libs/symmetry.o
2601:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/peaks.lo -MD -MP -MF src/.deps/peaks.Tpo -c src/peaks.c  -fno-common -DPIC -o src/.libs/peaks.o
2602:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/thread-pool.lo -MD -MP -MF src/.deps/thread-pool.Tpo -c src/thread-pool.c -o src/thread-pool.o >/dev/null 2>&1
2603:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/image.lo -MD -MP -MF src/.deps/image.Tpo -c src/image.c -o src/image.o >/dev/null 2>&1
2604:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/reflist.lo -MD -MP -MF src/.deps/reflist.Tpo -c src/reflist.c -o src/reflist.o >/dev/null 2>&1
2605:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/statistics.lo -MD -MP -MF src/.deps/statistics.Tpo -c src/statistics.c -o src/statistics.o >/dev/null 2>&1
2606:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/geometry.lo -MD -MP -MF src/.deps/geometry.Tpo -c src/geometry.c -o src/geometry.o >/dev/null 2>&1
2607:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/cell.lo -MD -MP -MF src/.deps/cell.Tpo -c src/cell.c -o src/cell.o >/dev/null 2>&1
2608:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/peaks.lo -MD -MP -MF src/.deps/peaks.Tpo -c src/peaks.c -o src/peaks.o >/dev/null 2>&1
2609:info:build depbase=`echo src/reflist-utils.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2610:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/reflist-utils.lo -MD -MP -MF $depbase.Tpo -c -o src/reflist-utils.lo src/reflist-utils.c &&\
2611:info:build     mv -f $depbase.Tpo $depbase.Plo
2612:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/utils.lo -MD -MP -MF src/.deps/utils.Tpo -c src/utils.c -o src/utils.o >/dev/null 2>&1
2613:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/reflist-utils.lo -MD -MP -MF src/.deps/reflist-utils.Tpo -c src/reflist-utils.c  -fno-common -DPIC -o src/.libs/reflist-utils.o
2614:info:build depbase=`echo src/filters.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2615:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/filters.lo -MD -MP -MF $depbase.Tpo -c -o src/filters.lo src/filters.c &&\
2616:info:build     mv -f $depbase.Tpo $depbase.Plo
2617:info:build depbase=`echo src/render.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2618:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/render.lo -MD -MP -MF $depbase.Tpo -c -o src/render.lo src/render.c &&\
2619:info:build     mv -f $depbase.Tpo $depbase.Plo
2620:info:build depbase=`echo src/index.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2621:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/index.lo -MD -MP -MF $depbase.Tpo -c -o src/index.lo src/index.c &&\
2622:info:build     mv -f $depbase.Tpo $depbase.Plo
2623:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/filters.lo -MD -MP -MF src/.deps/filters.Tpo -c src/filters.c  -fno-common -DPIC -o src/.libs/filters.o
2624:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/render.lo -MD -MP -MF src/.deps/render.Tpo -c src/render.c  -fno-common -DPIC -o src/.libs/render.o
2625:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/stream.lo -MD -MP -MF src/.deps/stream.Tpo -c src/stream.c -o src/stream.o >/dev/null 2>&1
2626:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/index.lo -MD -MP -MF src/.deps/index.Tpo -c src/index.c  -fno-common -DPIC -o src/.libs/index.o
2627:info:build depbase=`echo src/dirax.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2628:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/dirax.lo -MD -MP -MF $depbase.Tpo -c -o src/dirax.lo src/dirax.c &&\
2629:info:build     mv -f $depbase.Tpo $depbase.Plo
2630:info:build depbase=`echo src/mosflm.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2631:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/mosflm.lo -MD -MP -MF $depbase.Tpo -c -o src/mosflm.lo src/mosflm.c &&\
2632:info:build     mv -f $depbase.Tpo $depbase.Plo
2633:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/symmetry.lo -MD -MP -MF src/.deps/symmetry.Tpo -c src/symmetry.c -o src/symmetry.o >/dev/null 2>&1
2634:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/hdf5-file.lo -MD -MP -MF src/.deps/hdf5-file.Tpo -c src/hdf5-file.c -o src/hdf5-file.o >/dev/null 2>&1
2635:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/reflist-utils.lo -MD -MP -MF src/.deps/reflist-utils.Tpo -c src/reflist-utils.c -o src/reflist-utils.o >/dev/null 2>&1
2636:info:build depbase=`echo src/cell-utils.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2637:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/cell-utils.lo -MD -MP -MF $depbase.Tpo -c -o src/cell-utils.lo src/cell-utils.c &&\
2638:info:build     mv -f $depbase.Tpo $depbase.Plo
2639:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/dirax.lo -MD -MP -MF src/.deps/dirax.Tpo -c src/dirax.c  -fno-common -DPIC -o src/.libs/dirax.o
2640:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/mosflm.lo -MD -MP -MF src/.deps/mosflm.Tpo -c src/mosflm.c  -fno-common -DPIC -o src/.libs/mosflm.o
2641:info:build depbase=`echo src/integer_matrix.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2642:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/integer_matrix.lo -MD -MP -MF $depbase.Tpo -c -o src/integer_matrix.lo src/integer_matrix.c &&\
2643:info:build     mv -f $depbase.Tpo $depbase.Plo
2644:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/detector.lo -MD -MP -MF src/.deps/detector.Tpo -c src/detector.c -o src/detector.o >/dev/null 2>&1
2645:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/cell-utils.lo -MD -MP -MF src/.deps/cell-utils.Tpo -c src/cell-utils.c  -fno-common -DPIC -o src/.libs/cell-utils.o
2646:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/render.lo -MD -MP -MF src/.deps/render.Tpo -c src/render.c -o src/render.o >/dev/null 2>&1
2647:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/integer_matrix.lo -MD -MP -MF src/.deps/integer_matrix.Tpo -c src/integer_matrix.c  -fno-common -DPIC -o src/.libs/integer_matrix.o
2648:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/filters.lo -MD -MP -MF src/.deps/filters.Tpo -c src/filters.c -o src/filters.o >/dev/null 2>&1
2649:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/index.lo -MD -MP -MF src/.deps/index.Tpo -c src/index.c -o src/index.o >/dev/null 2>&1
2650:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/integer_matrix.lo -MD -MP -MF src/.deps/integer_matrix.Tpo -c src/integer_matrix.c -o src/integer_matrix.o >/dev/null 2>&1
2651:info:build depbase=`echo src/crystal.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2652:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/crystal.lo -MD -MP -MF $depbase.Tpo -c -o src/crystal.lo src/crystal.c &&\
2653:info:build     mv -f $depbase.Tpo $depbase.Plo
2654:info:build depbase=`echo src/xds.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2655:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/xds.lo -MD -MP -MF $depbase.Tpo -c -o src/xds.lo src/xds.c &&\
2656:info:build     mv -f $depbase.Tpo $depbase.Plo
2657:info:build depbase=`echo src/integration.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2658:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/integration.lo -MD -MP -MF $depbase.Tpo -c -o src/integration.lo src/integration.c &&\
2659:info:build     mv -f $depbase.Tpo $depbase.Plo
2660:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/dirax.lo -MD -MP -MF src/.deps/dirax.Tpo -c src/dirax.c -o src/dirax.o >/dev/null 2>&1
2661:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/crystal.lo -MD -MP -MF src/.deps/crystal.Tpo -c src/crystal.c  -fno-common -DPIC -o src/.libs/crystal.o
2662:info:build depbase=`echo src/predict-refine.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2663:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/predict-refine.lo -MD -MP -MF $depbase.Tpo -c -o src/predict-refine.lo src/predict-refine.c &&\
2664:info:build     mv -f $depbase.Tpo $depbase.Plo
2665:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/mosflm.lo -MD -MP -MF src/.deps/mosflm.Tpo -c src/mosflm.c -o src/mosflm.o >/dev/null 2>&1
2666:info:build depbase=`echo src/histogram.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2667:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/histogram.lo -MD -MP -MF $depbase.Tpo -c -o src/histogram.lo src/histogram.c &&\
2668:info:build     mv -f $depbase.Tpo $depbase.Plo
2669:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/xds.lo -MD -MP -MF src/.deps/xds.Tpo -c src/xds.c  -fno-common -DPIC -o src/.libs/xds.o
2670:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/integration.lo -MD -MP -MF src/.deps/integration.Tpo -c src/integration.c  -fno-common -DPIC -o src/.libs/integration.o
2671:info:build depbase=`echo src/events.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2672:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/events.lo -MD -MP -MF $depbase.Tpo -c -o src/events.lo src/events.c &&\
2673:info:build     mv -f $depbase.Tpo $depbase.Plo
2674:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/predict-refine.lo -MD -MP -MF src/.deps/predict-refine.Tpo -c src/predict-refine.c  -fno-common -DPIC -o src/.libs/predict-refine.o
2675:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/histogram.lo -MD -MP -MF src/.deps/histogram.Tpo -c src/histogram.c  -fno-common -DPIC -o src/.libs/histogram.o
2676:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/events.lo -MD -MP -MF src/.deps/events.Tpo -c src/events.c  -fno-common -DPIC -o src/.libs/events.o
2677:info:build depbase=`echo src/asdf.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
2678:info:build     /bin/sh ../libtool  --tag=CC   --mode=compile /usr/bin/clang -DHAVE_CONFIG_H -I. -I..  -DDATADIR=\""/opt/local/share"\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64  -I/opt/local/include  -I/opt/local/include  -I/opt/local/include  -pipe -Os -arch x86_64 -MT src/asdf.lo -MD -MP -MF $depbase.Tpo -c -o src/asdf.lo src/asdf.c &&\
2679:info:build     mv -f $depbase.Tpo $depbase.Plo
2680:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/histogram.lo -MD -MP -MF src/.deps/histogram.Tpo -c src/histogram.c -o src/histogram.o >/dev/null 2>&1
2681:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/crystal.lo -MD -MP -MF src/.deps/crystal.Tpo -c src/crystal.c -o src/crystal.o >/dev/null 2>&1
2682:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/cell-utils.lo -MD -MP -MF src/.deps/cell-utils.Tpo -c src/cell-utils.c -o src/cell-utils.o >/dev/null 2>&1
2683:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/asdf.lo -MD -MP -MF src/.deps/asdf.Tpo -c src/asdf.c  -fno-common -DPIC -o src/.libs/asdf.o
2684:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/events.lo -MD -MP -MF src/.deps/events.Tpo -c src/events.c -o src/events.o >/dev/null 2>&1
2685:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/xds.lo -MD -MP -MF src/.deps/xds.Tpo -c src/xds.c -o src/xds.o >/dev/null 2>&1
2686:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/predict-refine.lo -MD -MP -MF src/.deps/predict-refine.Tpo -c src/predict-refine.c -o src/predict-refine.o >/dev/null 2>&1
2687:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/integration.lo -MD -MP -MF src/.deps/integration.Tpo -c src/integration.c -o src/integration.o >/dev/null 2>&1
2688:info:build libtool: compile:  /usr/bin/clang -DHAVE_CONFIG_H -I. -I.. -DDATADIR=\"/opt/local/share\" -I../lib -Wall -I../lib -pipe -Os -arch x86_64 -I/opt/local/include -I/opt/local/include -I/opt/local/include -pipe -Os -arch x86_64 -MT src/asdf.lo -MD -MP -MF src/.deps/asdf.Tpo -c src/asdf.c -o src/asdf.o >/dev/null 2>&1
2689:info:build /bin/sh ../libtool  --tag=CC   --mode=link /usr/bin/clang  -pipe -Os -arch x86_64 -version-info 7:0:0 -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o libcrystfel.la -rpath /opt/local/lib src/reflist.lo src/utils.lo src/cell.lo src/detector.lo src/thread-pool.lo src/image.lo src/hdf5-file.lo src/geometry.lo src/statistics.lo src/symmetry.lo src/stream.lo src/peaks.lo src/reflist-utils.lo src/filters.lo src/render.lo src/index.lo src/dirax.lo src/mosflm.lo src/cell-utils.lo src/integer_matrix.lo src/crystal.lo src/xds.lo src/integration.lo src/predict-refine.lo src/histogram.lo src/events.lo src/asdf.lo ../lib/libgnu.la  -lhdf5 -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lfftw3  -lncursesw -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -pthread 
2690:info:build libtool: link: /usr/bin/clang -dynamiclib -Wl,-flat_namespace -Wl,-undefined -Wl,suppress -o .libs/libcrystfel.7.dylib  src/.libs/reflist.o src/.libs/utils.o src/.libs/cell.o src/.libs/detector.o src/.libs/thread-pool.o src/.libs/image.o src/.libs/hdf5-file.o src/.libs/geometry.o src/.libs/statistics.o src/.libs/symmetry.o src/.libs/stream.o src/.libs/peaks.o src/.libs/reflist-utils.o src/.libs/filters.o src/.libs/render.o src/.libs/index.o src/.libs/dirax.o src/.libs/mosflm.o src/.libs/cell-utils.o src/.libs/integer_matrix.o src/.libs/crystal.o src/.libs/xds.o src/.libs/integration.o src/.libs/predict-refine.o src/.libs/histogram.o src/.libs/events.o src/.libs/asdf.o   -Wl,-force_load,../lib/.libs/libgnu.a  -L/opt/local/lib -lhdf5 -lgsl -lgslcblas -lm -lfftw3 -lncursesw  -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -pthread   -pthread -install_name  /opt/local/lib/libcrystfel.7.dylib -compatibility_version 8 -current_version 8.0 -Wl,-single_module
2691:info:build clang: warning: argument unused during compilation: '-pthread'
2692:info:build clang: warning: argument unused during compilation: '-pthread'
2693:info:build libtool: link: (cd ".libs" && rm -f "libcrystfel.dylib" && ln -s "libcrystfel.7.dylib" "libcrystfel.dylib")
2694:info:build libtool: link: (cd .libs/libcrystfel.lax/libgnu.a && ar x "/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/libcrystfel/../lib/.libs/libgnu.a")
2695:info:build libtool: link: ar cru .libs/libcrystfel.a  src/reflist.o src/utils.o src/cell.o src/detector.o src/thread-pool.o src/image.o src/hdf5-file.o src/geometry.o src/statistics.o src/symmetry.o src/stream.o src/peaks.o src/reflist-utils.o src/filters.o src/render.o src/index.o src/dirax.o src/mosflm.o src/cell-utils.o src/integer_matrix.o src/crystal.o src/xds.o src/integration.o src/predict-refine.o src/histogram.o src/events.o src/asdf.o  .libs/libcrystfel.lax/libgnu.a/fd-hook.o .libs/libcrystfel.lax/libgnu.a/forkpty.o .libs/libcrystfel.lax/libgnu.a/ioctl.o .libs/libcrystfel.lax/libgnu.a/openpty.o .libs/libcrystfel.lax/libgnu.a/sys_socket.o .libs/libcrystfel.lax/libgnu.a/unistd.o
2696:info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libcrystfel.a(fd-hook.o) has no symbols
2697:info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libcrystfel.a(sys_socket.o) has no symbols
2698:info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libcrystfel.a(unistd.o) has no symbols
2699:info:build libtool: link: ranlib .libs/libcrystfel.a
2700:info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libcrystfel.a(fd-hook.o) has no symbols
2701:info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libcrystfel.a(sys_socket.o) has no symbols
2702:info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libcrystfel.a(unistd.o) has no symbols
2703:info:build libtool: link: rm -fr .libs/libcrystfel.lax
2704:info:build libtool: link: ( cd ".libs" && rm -f "libcrystfel.la" && ln -s "../libcrystfel.la" "libcrystfel.la" )
2705:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/libcrystfel'
2706:info:build make[2]: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1'
2707:info:build depbase=`echo src/pattern_sim.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2708:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/pattern_sim.o -MD -MP -MF $depbase.Tpo -c -o src/pattern_sim.o src/pattern_sim.c &&\
2709:info:build     mv -f $depbase.Tpo $depbase.Po
2710:info:build depbase=`echo src/diffraction.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2711:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/diffraction.o -MD -MP -MF $depbase.Tpo -c -o src/diffraction.o src/diffraction.c &&\
2712:info:build     mv -f $depbase.Tpo $depbase.Po
2713:info:build depbase=`echo src/process_hkl.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2714:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/process_hkl.o -MD -MP -MF $depbase.Tpo -c -o src/process_hkl.o src/process_hkl.c &&\
2715:info:build     mv -f $depbase.Tpo $depbase.Po
2716:info:build depbase=`echo src/get_hkl.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2717:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/get_hkl.o -MD -MP -MF $depbase.Tpo -c -o src/get_hkl.o src/get_hkl.c &&\
2718:info:build     mv -f $depbase.Tpo $depbase.Po
2719:info:build depbase=`echo src/indexamajig.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2720:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/indexamajig.o -MD -MP -MF $depbase.Tpo -c -o src/indexamajig.o src/indexamajig.c &&\
2721:info:build     mv -f $depbase.Tpo $depbase.Po
2722:info:build depbase=`echo src/im-sandbox.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2723:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/im-sandbox.o -MD -MP -MF $depbase.Tpo -c -o src/im-sandbox.o src/im-sandbox.c &&\
2724:info:build     mv -f $depbase.Tpo $depbase.Po
2725:info:build depbase=`echo src/process_image.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2726:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/process_image.o -MD -MP -MF $depbase.Tpo -c -o src/process_image.o src/process_image.c &&\
2727:info:build     mv -f $depbase.Tpo $depbase.Po
2728:info:build depbase=`echo src/compare_hkl.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2729:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/compare_hkl.o -MD -MP -MF $depbase.Tpo -c -o src/compare_hkl.o src/compare_hkl.c &&\
2730:info:build     mv -f $depbase.Tpo $depbase.Po
2731:info:build depbase=`echo src/partialator.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2732:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/partialator.o -MD -MP -MF $depbase.Tpo -c -o src/partialator.o src/partialator.c &&\
2733:info:build     mv -f $depbase.Tpo $depbase.Po
2734:info:build depbase=`echo src/post-refinement.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2735:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/post-refinement.o -MD -MP -MF $depbase.Tpo -c -o src/post-refinement.o src/post-refinement.c &&\
2736:info:build     mv -f $depbase.Tpo $depbase.Po
2737:info:build depbase=`echo src/merge.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2738:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/merge.o -MD -MP -MF $depbase.Tpo -c -o src/merge.o src/merge.c &&\
2739:info:build     mv -f $depbase.Tpo $depbase.Po
2740:info:build depbase=`echo src/rejection.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2741:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/rejection.o -MD -MP -MF $depbase.Tpo -c -o src/rejection.o src/rejection.c &&\
2742:info:build     mv -f $depbase.Tpo $depbase.Po
2743:info:build src/rejection.c:158:13: warning: unused function 'check_ccs' [-Wunused-function]
2744:info:build static void check_ccs(Crystal **crystals, int n_crystals, RefList *full)
2745:info:build             ^
2746:info:build depbase=`echo src/check_hkl.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2747:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/check_hkl.o -MD -MP -MF $depbase.Tpo -c -o src/check_hkl.o src/check_hkl.c &&\
2748:info:build     mv -f $depbase.Tpo $depbase.Po
2749:info:build 1 warning generated.
2750:info:build depbase=`echo src/partial_sim.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2751:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/partial_sim.o -MD -MP -MF $depbase.Tpo -c -o src/partial_sim.o src/partial_sim.c &&\
2752:info:build     mv -f $depbase.Tpo $depbase.Po
2753:info:build depbase=`echo src/ambigator.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2754:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/ambigator.o -MD -MP -MF $depbase.Tpo -c -o src/ambigator.o src/ambigator.c &&\
2755:info:build     mv -f $depbase.Tpo $depbase.Po
2756:info:build depbase=`echo src/geoptimiser.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2757:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/geoptimiser.o -MD -MP -MF $depbase.Tpo -c -o src/geoptimiser.o src/geoptimiser.c &&\
2758:info:build     mv -f $depbase.Tpo $depbase.Po
2759:info:build depbase=`echo src/hdfsee-render.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2760:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/hdfsee-render.o -MD -MP -MF $depbase.Tpo -c -o src/hdfsee-render.o src/hdfsee-render.c &&\
2761:info:build     mv -f $depbase.Tpo $depbase.Po
2762:info:build depbase=`echo src/whirligig.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2763:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/whirligig.o -MD -MP -MF $depbase.Tpo -c -o src/whirligig.o src/whirligig.c &&\
2764:info:build     mv -f $depbase.Tpo $depbase.Po
2765:info:build depbase=`echo src/list_events.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2766:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/list_events.o -MD -MP -MF $depbase.Tpo -c -o src/list_events.o src/list_events.c &&\
2767:info:build     mv -f $depbase.Tpo $depbase.Po
2768:info:build depbase=`echo src/hdfsee.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2769:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/hdfsee.o -MD -MP -MF $depbase.Tpo -c -o src/hdfsee.o src/hdfsee.c &&\
2770:info:build     mv -f $depbase.Tpo $depbase.Po
2771:info:build depbase=`echo src/dw-hdfsee.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2772:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/dw-hdfsee.o -MD -MP -MF $depbase.Tpo -c -o src/dw-hdfsee.o src/dw-hdfsee.c &&\
2773:info:build     mv -f $depbase.Tpo $depbase.Po
2774:info:build depbase=`echo src/cell_explorer.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2775:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/cell_explorer.o -MD -MP -MF $depbase.Tpo -c -o src/cell_explorer.o src/cell_explorer.c &&\
2776:info:build     mv -f $depbase.Tpo $depbase.Po
2777:info:build depbase=`echo src/multihistogram.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2778:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/multihistogram.o -MD -MP -MF $depbase.Tpo -c -o src/multihistogram.o src/multihistogram.c &&\
2779:info:build     mv -f $depbase.Tpo $depbase.Po
2780:info:build depbase=`echo src/render_hkl.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2781:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT src/render_hkl.o -MD -MP -MF $depbase.Tpo -c -o src/render_hkl.o src/render_hkl.c &&\
2782:info:build     mv -f $depbase.Tpo $depbase.Po
2783:info:build depbase=`echo tests/list_check.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2784:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT tests/list_check.o -MD -MP -MF $depbase.Tpo -c -o tests/list_check.o tests/list_check.c &&\
2785:info:build     mv -f $depbase.Tpo $depbase.Po
2786:info:build depbase=`echo tests/integration_check.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2787:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT tests/integration_check.o -MD -MP -MF $depbase.Tpo -c -o tests/integration_check.o tests/integration_check.c &&\
2788:info:build     mv -f $depbase.Tpo $depbase.Po
2789:info:build depbase=`echo tests/pr_p_gradient_check.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2790:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT tests/pr_p_gradient_check.o -MD -MP -MF $depbase.Tpo -c -o tests/pr_p_gradient_check.o tests/pr_p_gradient_check.c &&\
2791:info:build     mv -f $depbase.Tpo $depbase.Po
2792:info:build depbase=`echo tests/symmetry_check.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2793:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT tests/symmetry_check.o -MD -MP -MF $depbase.Tpo -c -o tests/symmetry_check.o tests/symmetry_check.c &&\
2794:info:build     mv -f $depbase.Tpo $depbase.Po
2795:info:build depbase=`echo tests/centering_check.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2796:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT tests/centering_check.o -MD -MP -MF $depbase.Tpo -c -o tests/centering_check.o tests/centering_check.c &&\
2797:info:build     mv -f $depbase.Tpo $depbase.Po
2798:info:build depbase=`echo tests/transformation_check.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2799:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT tests/transformation_check.o -MD -MP -MF $depbase.Tpo -c -o tests/transformation_check.o tests/transformation_check.c &&\
2800:info:build     mv -f $depbase.Tpo $depbase.Po
2801:info:build depbase=`echo tests/cell_check.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2802:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT tests/cell_check.o -MD -MP -MF $depbase.Tpo -c -o tests/cell_check.o tests/cell_check.c &&\
2803:info:build     mv -f $depbase.Tpo $depbase.Po
2804:info:build depbase=`echo tests/ring_check.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2805:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT tests/ring_check.o -MD -MP -MF $depbase.Tpo -c -o tests/ring_check.o tests/ring_check.c &&\
2806:info:build     mv -f $depbase.Tpo $depbase.Po
2807:info:build depbase=`echo tests/prof2d_check.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2808:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT tests/prof2d_check.o -MD -MP -MF $depbase.Tpo -c -o tests/prof2d_check.o tests/prof2d_check.c &&\
2809:info:build     mv -f $depbase.Tpo $depbase.Po
2810:info:build depbase=`echo tests/ambi_check.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2811:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT tests/ambi_check.o -MD -MP -MF $depbase.Tpo -c -o tests/ambi_check.o tests/ambi_check.c &&\
2812:info:build     mv -f $depbase.Tpo $depbase.Po
2813:info:build depbase=`echo tests/prediction_gradient_check.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
2814:info:build     /usr/bin/clang -DHAVE_CONFIG_H -I. -I./libcrystfel/src -I./data -DDATADIR=\""/opt/local/share"\" -I./lib -I./lib -I/opt/local/include -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64 -MT tests/prediction_gradient_check.o -MD -MP -MF $depbase.Tpo -c -o tests/prediction_gradient_check.o tests/prediction_gradient_check.c &&\
2815:info:build     mv -f $depbase.Tpo $depbase.Po
2816:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o src/pattern_sim src/pattern_sim.o src/diffraction.o  ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2817:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o src/process_hkl src/process_hkl.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2818:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o src/get_hkl src/get_hkl.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2819:info:build src/geoptimiser.c:3054:2: warning: 'g_type_init' is deprecated [-Wdeprecated-declarations]
2820:info:build         g_type_init();
2821:info:build         ^
2822:info:build /opt/local/include/glib-2.0/gobject/gtype.h:681:23: note: 'g_type_init' has been explicitly marked deprecated here
2823:info:build void                  g_type_init                    (void);
2824:info:build                       ^
2825:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o src/indexamajig src/indexamajig.o src/im-sandbox.o src/process_image.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2826:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o src/compare_hkl src/compare_hkl.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2827:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o src/partialator src/partialator.o src/post-refinement.o src/merge.o src/rejection.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2828:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o src/check_hkl src/check_hkl.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2829:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o src/partial_sim src/partial_sim.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2830:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o src/ambigator src/ambigator.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2831:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o src/.libs/pattern_sim src/pattern_sim.o src/diffraction.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2832:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o src/.libs/get_hkl src/get_hkl.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2833:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o src/.libs/process_hkl src/process_hkl.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2834:info:build clang: warning: argument unused during compilation: '-pthread'
2835:info:build clang: warning: argument unused during compilation: '-pthread'
2836:info:build clang: warning: argument unused during compilation: '-pthread'
2837:info:build clang: warning: argument unused during compilation: '-pthread'
2838:info:build clang: warning: argument unused during compilation: '-pthread'
2839:info:build clang: warning: argument unused during compilation: '-pthread'
2840:info:build clang: warning: argument unused during compilation: '-pthread'
2841:info:build clang: warning: argument unused during compilation: '-pthread'
2842:info:build clang: warning: argument unused during compilation: '-pthread'
2843:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o src/whirligig src/whirligig.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2844:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o src/list_events src/list_events.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2845:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o src/cell_explorer src/cell_explorer.o src/multihistogram.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2846:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o src/render_hkl src/render_hkl.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2847:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o src/.libs/indexamajig src/indexamajig.o src/im-sandbox.o src/process_image.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2848:info:build clang: warning: argument unused during compilation: '-pthread'
2849:info:build clang: warning: argument unused during compilation: '-pthread'
2850:info:build clang: warning: argument unused during compilation: '-pthread'
2851:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o src/.libs/compare_hkl src/compare_hkl.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2852:info:build clang: warning: argument unused during compilation: '-pthread'
2853:info:build clang: warning: argument unused during compilation: '-pthread'
2854:info:build clang: warning: argument unused during compilation: '-pthread'
2855:info:build 1 warning generated.
2856:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o src/.libs/partialator src/partialator.o src/post-refinement.o src/merge.o src/rejection.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2857:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o tests/list_check tests/list_check.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2858:info:build clang: warning: argument unused during compilation: '-pthread'
2859:info:build clang: warning: argument unused during compilation: '-pthread'
2860:info:build clang: warning: argument unused during compilation: '-pthread'
2861:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o tests/integration_check tests/integration_check.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lfftw3  -lncursesw -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -pthread
2862:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o tests/pr_p_gradient_check tests/pr_p_gradient_check.o src/post-refinement.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2863:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o src/.libs/check_hkl src/check_hkl.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2864:info:build clang: warning: argument unused during compilation: '-pthread'
2865:info:build clang: warning: argument unused during compilation: '-pthread'
2866:info:build clang: warning: argument unused during compilation: '-pthread'
2867:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o tests/symmetry_check tests/symmetry_check.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2868:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o tests/centering_check tests/centering_check.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2869:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o tests/transformation_check tests/transformation_check.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2870:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o src/.libs/partial_sim src/partial_sim.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2871:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o tests/.libs/integration_check tests/integration_check.o -Wl,-headerpad_max_install_names -arch x86_64 -pthread  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lhdf5 -lgsl -lgslcblas -lm -lfftw3 -lncursesw -pthread
2872:info:build clang: warning: argument unused during compilation: '-pthread'
2873:info:build clang: warning: argument unused during compilation: '-pthread'
2874:info:build clang: warning: argument unused during compilation: '-pthread'
2875:info:build clang: warning: argument unused during compilation: '-pthread'
2876:info:build clang: warning: argument unused during compilation: '-pthread'
2877:info:build clang: warning: argument unused during compilation: '-pthread'
2878:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o src/.libs/ambigator src/ambigator.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2879:info:build clang: warning: argument unused during compilation: '-pthread'
2880:info:build clang: warning: argument unused during compilation: '-pthread'
2881:info:build clang: warning: argument unused during compilation: '-pthread'
2882:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o tests/cell_check tests/cell_check.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2883:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o tests/ring_check tests/ring_check.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2884:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o src/.libs/whirligig src/whirligig.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2885:info:build clang: warning: argument unused during compilation: '-pthread'
2886:info:build clang: warning: argument unused during compilation: '-pthread'
2887:info:build clang: warning: argument unused during compilation: '-pthread'
2888:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o tests/prof2d_check tests/prof2d_check.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lfftw3  -lncursesw -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -pthread
2889:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o src/.libs/cell_explorer src/cell_explorer.o src/multihistogram.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2890:info:build clang: warning: argument unused during compilation: '-pthread'
2891:info:build clang: warning: argument unused during compilation: '-pthread'
2892:info:build clang: warning: argument unused during compilation: '-pthread'
2893:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o src/.libs/list_events src/list_events.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2894:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o src/.libs/render_hkl src/render_hkl.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2895:info:build clang: warning: argument unused during compilation: '-pthread'
2896:info:build clang: warning: argument unused during compilation: '-pthread'
2897:info:build clang: warning: argument unused during compilation: '-pthread'
2898:info:build clang: warning: argument unused during compilation: '-pthread'
2899:info:build clang: warning: argument unused during compilation: '-pthread'
2900:info:build clang: warning: argument unused during compilation: '-pthread'
2901:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o tests/ambi_check tests/ambi_check.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2902:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o tests/.libs/pr_p_gradient_check tests/pr_p_gradient_check.o src/post-refinement.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2903:info:build clang: warning: argument unused during compilation: '-pthread'
2904:info:build clang: warning: argument unused during compilation: '-pthread'
2905:info:build clang: warning: argument unused during compilation: '-pthread'
2906:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o tests/prediction_gradient_check tests/prediction_gradient_check.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2907:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o tests/.libs/list_check tests/list_check.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2908:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o src/geoptimiser src/geoptimiser.o src/hdfsee-render.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2909:info:build clang: warning: argument unused during compilation: '-pthread'
2910:info:build clang: warning: argument unused during compilation: '-pthread'
2911:info:build clang: warning: argument unused during compilation: '-pthread'
2912:info:build /bin/sh ./libtool  --tag=CC   --mode=link /usr/bin/clang -Wall -pipe -Os -arch x86_64  -I/opt/local/include   -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2   -D_GNU_SOURCE  -I/opt/local/include/libpng16  -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include   -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include  -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2  -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o src/hdfsee src/hdfsee.o src/dw-hdfsee.o src/hdfsee-render.o ./lib/libgnu.la ./libcrystfel/libcrystfel.la  -lhdf5 -lm -lz -L/opt/local/lib -lgsl -lgslcblas -lm  -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lgio-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype   -pthread -ltiff -L/opt/local/lib -lpng16  -L/opt/local/lib -lcairo   -L/opt/local/lib -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lintl   -L/opt/local/lib -lfftw3  -L/opt/local/lib -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl  -L/opt/local/lib -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64
2913:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o tests/.libs/symmetry_check tests/symmetry_check.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2914:info:build clang: warning: argument unused during compilation: '-pthread'
2915:info:build clang: warning: argument unused during compilation: '-pthread'
2916:info:build clang: warning: argument unused during compilation: '-pthread'
2917:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o tests/.libs/prof2d_check tests/prof2d_check.o -Wl,-headerpad_max_install_names -arch x86_64 -pthread  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lhdf5 -lgsl -lgslcblas -lm -lfftw3 -lncursesw -pthread
2918:info:build clang: warning: argument unused during compilation: '-pthread'
2919:info:build clang: warning: argument unused during compilation: '-pthread'
2920:info:build clang: warning: argument unused during compilation: '-pthread'
2921:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o tests/.libs/centering_check tests/centering_check.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2922:info:build clang: warning: argument unused during compilation: '-pthread'
2923:info:build clang: warning: argument unused during compilation: '-pthread'
2924:info:build clang: warning: argument unused during compilation: '-pthread'
2925:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o tests/.libs/transformation_check tests/transformation_check.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2926:info:build clang: warning: argument unused during compilation: '-pthread'
2927:info:build clang: warning: argument unused during compilation: '-pthread'
2928:info:build clang: warning: argument unused during compilation: '-pthread'
2929:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o tests/.libs/cell_check tests/cell_check.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2930:info:build clang: warning: argument unused during compilation: '-pthread'
2931:info:build clang: warning: argument unused during compilation: '-pthread'
2932:info:build clang: warning: argument unused during compilation: '-pthread'
2933:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o tests/.libs/ring_check tests/ring_check.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2934:info:build clang: warning: argument unused during compilation: '-pthread'
2935:info:build clang: warning: argument unused during compilation: '-pthread'
2936:info:build clang: warning: argument unused during compilation: '-pthread'
2937:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o tests/.libs/ambi_check tests/ambi_check.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2938:info:build clang: warning: argument unused during compilation: '-pthread'
2939:info:build clang: warning: argument unused during compilation: '-pthread'
2940:info:build clang: warning: argument unused during compilation: '-pthread'
2941:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o tests/.libs/prediction_gradient_check tests/prediction_gradient_check.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2942:info:build clang: warning: argument unused during compilation: '-pthread'
2943:info:build clang: warning: argument unused during compilation: '-pthread'
2944:info:build clang: warning: argument unused during compilation: '-pthread'
2945:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o src/.libs/geoptimiser src/geoptimiser.o src/hdfsee-render.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2946:info:build libtool: link: /usr/bin/clang -Wall -pipe -Os -arch x86_64 -I/opt/local/include -pthread -D_REENTRANT -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/ -I/opt/local/include -I/opt/local/include/cairo -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -D_GNU_SOURCE -I/opt/local/include/libpng16 -I/opt/local/include/cairo -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/pixman-1 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libpng16 -I/opt/local/include -D_REENTRANT -I/opt/local/include/gdk-pixbuf-2.0 -I/opt/local/include/libpng16 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -D_REENTRANT -I/opt/local/include/pango-1.0 -I/opt/local/include/cairo -I/opt/local/include/pixman-1 -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/pango-1.0 -I/opt/local/include/harfbuzz -I/opt/local/include/pango-1.0 -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include -I/opt/local/include/libpng16 -I/opt/local/include -I/opt/local/include/freetype2 -pipe -Os -arch x86_64 -Wl,-headerpad_max_install_names -arch x86_64 -o src/.libs/hdfsee src/hdfsee.o src/dw-hdfsee.o src/hdfsee-render.o -pthread -Wl,-headerpad_max_install_names -arch x86_64  -L/opt/local/lib ./lib/.libs/libgnu.a ./libcrystfel/.libs/libcrystfel.dylib -lncursesw -lhdf5 -lz -lgsl -lgslcblas -lgtk-x11-2.0 -lgdk-x11-2.0 -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -lXext -latk-1.0 -lgio-2.0 -ltiff -lpng16 -lgdk_pixbuf-2.0 -lfftw3 -lpangocairo-1.0 -lcairo -lpangoft2-1.0 -lpango-1.0 -lm -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -pthread
2947:info:build clang: warning: argument unused during compilation: '-pthread'
2948:info:build clang: warning: argument unused during compilation: '-pthread'
2949:info:build clang: warning: argument unused during compilation: '-pthread'
2950:info:build clang: warning: argument unused during compilation: '-pthread'
2951:info:build clang: warning: argument unused during compilation: '-pthread'
2952:info:build clang: warning: argument unused during compilation: '-pthread'
2953:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1'
2954:info:build make[1]: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1'
2955:info:build make: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1'
2956:warn:build The following existing files were hidden from the build system by trace mode:
2957:msg:build   /opt/local/bin/ar
2958:msg:build   /opt/local/bin/lipo
2959:msg:build   /opt/local/bin/ranlib
2960:info:build The following files would have been hidden from the build system by trace mode if they existed:
2961:info:build   /AppleInternal
2962:info:build   /AppleInternal/Developer/Toolchains
2963:info:build   /Developer
2964:info:build   /Info.plist
2965:info:build   /etc/asl/.noquota
2966:info:build   /usr/gnu/include
2967:info:build   /usr/local/include/Availability.h
2968:info:build   /usr/local/include/AvailabilityInternal.h
2969:info:build   /usr/local/include/_types
2970:info:build   /usr/local/include/_types.h
2971:info:build   /usr/local/include/alloca.h
2972:info:build   /usr/local/include/assert.h
2973:info:build   /usr/local/include/complex.h
2974:info:build   /usr/local/include/ctype.h
2975:info:build   /usr/local/include/dirent.h
2976:info:build   /usr/local/include/errno.h
2977:info:build   /usr/local/include/fcntl.h
2978:info:build   /usr/local/include/fenv.h
2979:info:build   /usr/local/include/float.h
2980:info:build   /usr/local/include/gethostuuid.h
2981:info:build   /usr/local/include/gethostuuid_private.h
2982:info:build   /usr/local/include/getopt.h
2983:info:build   /usr/local/include/i386
2984:info:build   /usr/local/include/inttypes.h
2985:info:build   /usr/local/include/libgen.h
2986:info:build   /usr/local/include/libkern
2987:info:build   /usr/local/include/libkern/i386
2988:info:build   /usr/local/include/limits.h
2989:info:build   /usr/local/include/mach/i386
2990:info:build   /usr/local/include/machine
2991:info:build   /usr/local/include/math.h
2992:info:build   /usr/local/include/pthread
2993:info:build   /usr/local/include/pthread.h
2994:info:build   /usr/local/include/pthread_impl.h
2995:info:build   /usr/local/include/pwd.h
2996:info:build   /usr/local/include/runetype.h
2997:info:build   /usr/local/include/secure
2998:info:build   /usr/local/include/semaphore.h
2999:info:build   /usr/local/include/signal.h
3000:info:build   /usr/local/include/stdarg.h
3001:info:build   /usr/local/include/stdbool.h
3002:info:build   /usr/local/include/stddef.h
3003:info:build   /usr/local/include/stdint.h
3004:info:build   /usr/local/include/stdio.h
3005:info:build   /usr/local/include/stdlib.h
3006:info:build   /usr/local/include/string.h
3007:info:build   /usr/local/include/sys
3008:info:build   /usr/local/include/sys/_pthread
3009:info:build   /usr/local/include/sys/_types
3010:info:build   /usr/local/include/termios.h
3011:info:build   /usr/local/include/time.h
3012:info:build   /usr/local/include/unistd.h
3013:info:build   /usr/local/include/util.h
3014:info:build   /usr/local/include/utmp.h
3015:info:build   /usr/local/include/uuid
3016:info:build   /usr/local/lib/libcache.dylib
3017:info:build   /usr/local/lib/libcommonCrypto.dylib
3018:info:build   /usr/local/lib/libcompiler_rt.dylib
3019:info:build   /usr/local/lib/libcopyfile.dylib
3020:info:build   /usr/local/lib/libcorecrypto.dylib
3021:info:build   /usr/local/lib/libdispatch.dylib
3022:info:build   /usr/local/lib/libdyld.dylib
3023:info:build   /usr/local/lib/libkeymgr.dylib
3024:info:build   /usr/local/lib/liblaunch.dylib
3025:info:build   /usr/local/lib/libm.a
3026:info:build   /usr/local/lib/libm.dylib
3027:info:build   /usr/local/lib/libm.la
3028:info:build   /usr/local/lib/libm.so
3029:info:build   /usr/local/lib/libmacho.dylib
3030:info:build   /usr/local/lib/libquarantine.dylib
3031:info:build   /usr/local/lib/libremovefile.dylib
3032:info:build   /usr/local/lib/libsystem_asl.dylib
3033:info:build   /usr/local/lib/libsystem_blocks.dylib
3034:info:build   /usr/local/lib/libsystem_c.dylib
3035:info:build   /usr/local/lib/libsystem_configuration.dylib
3036:info:build   /usr/local/lib/libsystem_coreservices.dylib
3037:info:build   /usr/local/lib/libsystem_coretls.dylib
3038:info:build   /usr/local/lib/libsystem_dnssd.dylib
3039:info:build   /usr/local/lib/libsystem_info.dylib
3040:info:build   /usr/local/lib/libsystem_kernel.dylib
3041:info:build   /usr/local/lib/libsystem_m.dylib
3042:info:build   /usr/local/lib/libsystem_malloc.dylib
3043:info:build   /usr/local/lib/libsystem_network.dylib
3044:info:build   /usr/local/lib/libsystem_networkextension.dylib
3045:info:build   /usr/local/lib/libsystem_notify.dylib
3046:info:build   /usr/local/lib/libsystem_platform.dylib
3047:info:build   /usr/local/lib/libsystem_pthread.dylib
3048:info:build   /usr/local/lib/libsystem_sandbox.dylib
3049:info:build   /usr/local/lib/libsystem_secinit.dylib
3050:info:build   /usr/local/lib/libsystem_stats.dylib
3051:info:build   /usr/local/lib/libsystem_trace.dylib
3052:info:build   /usr/local/lib/libunc.dylib
3053:info:build   /usr/local/lib/libunwind.dylib
3054:info:build   /usr/local/lib/libxpc.dylib
3055:info:build   /usr/tmp
3056:debug:build Privilege de-escalation not attempted as not running as root.
3057:debug:destroot destroot phase started at Thu Aug  6 09:57:38 MST 2015
3058:notice:destroot --->  Staging crystfel into destroot
3059:debug:destroot Can't run destroot under sudo without elevated privileges (due to mtree).
3060:debug:destroot Run destroot without sudo to avoid root privileges.
3061:debug:destroot Going to escalate privileges back to root.
3062:debug:destroot euid changed to: 0. egid changed to: 0.
3063:info:destroot ./usr missing (created)
3064:info:destroot . missing (directory not created: File exists)
3065:info:destroot ./Applications missing (created)
3066:info:destroot ./Developer missing (created)
3067:info:destroot ./Library missing (created)
3068:info:destroot . changed
3069:info:destroot  gid expected 80 found 0 modified
3070:info:destroot ./bin missing (created)
3071:info:destroot ./etc missing (created)
3072:info:destroot ./include missing (created)
3073:info:destroot ./lib missing (created)
3074:info:destroot ./lib/pkgconfig missing (created)
3075:info:destroot ./libexec missing (created)
3076:info:destroot ./sbin missing (created)
3077:info:destroot ./share missing (created)
3078:info:destroot ./share/info missing (created)
3079:info:destroot ./share/man missing (created)
3080:info:destroot ./share/man/cat1 missing (created)
3081:info:destroot ./share/man/cat2 missing (created)
3082:info:destroot ./share/man/cat3 missing (created)
3083:info:destroot ./share/man/cat4 missing (created)
3084:info:destroot ./share/man/cat5 missing (created)
3085:info:destroot ./share/man/cat6 missing (created)
3086:info:destroot ./share/man/cat7 missing (created)
3087:info:destroot ./share/man/cat8 missing (created)
3088:info:destroot ./share/man/cat9 missing (created)
3089:info:destroot ./share/man/catl missing (created)
3090:info:destroot ./share/man/catn missing (created)
3091:info:destroot ./share/man/man1 missing (created)
3092:info:destroot ./share/man/man2 missing (created)
3093:info:destroot ./share/man/man3 missing (created)
3094:info:destroot ./share/man/man4 missing (created)
3095:info:destroot ./share/man/man5 missing (created)
3096:info:destroot ./share/man/man6 missing (created)
3097:info:destroot ./share/man/man7 missing (created)
3098:info:destroot ./share/man/man8 missing (created)
3099:info:destroot ./share/man/man9 missing (created)
3100:info:destroot ./share/man/manl missing (created)
3101:info:destroot ./share/man/mann missing (created)
3102:info:destroot ./share/nls missing (created)
3103:info:destroot ./share/nls/C missing (created)
3104:info:destroot ./share/nls/af_ZA.ISO8859-1 missing (created)
3105:info:destroot ./share/nls/af_ZA.ISO8859-15 missing (created)
3106:info:destroot ./share/nls/bg_BG.CP1251 missing (created)
3107:info:destroot ./share/nls/cs_CZ.ISO8859-2 missing (created)
3108:info:destroot ./share/nls/da_DK.ISO8859-1 missing (created)
3109:info:destroot ./share/nls/da_DK.ISO8859-15 missing (created)
3110:info:destroot ./share/nls/de_AT.ISO8859-1 missing (created)
3111:info:destroot ./share/nls/de_AT.ISO8859-15 missing (created)
3112:info:destroot ./share/nls/de_CH.ISO8859-1 missing (created)
3113:info:destroot ./share/nls/de_CH.ISO8859-15 missing (created)
3114:info:destroot ./share/nls/de_DE.ISO8859-1 missing (created)
3115:info:destroot ./share/nls/de_DE.ISO8859-15 missing (created)
3116:info:destroot ./share/nls/el_GR.ISO8859-7 missing (created)
3117:info:destroot ./share/nls/en_AU.ISO8859-1 missing (created)
3118:info:destroot ./share/nls/en_AU.ISO8859-15 missing (created)
3119:info:destroot ./share/nls/en_AU.US-ASCII missing (created)
3120:info:destroot ./share/nls/en_CA.ISO8859-1 missing (created)
3121:info:destroot ./share/nls/en_CA.ISO8859-15 missing (created)
3122:info:destroot ./share/nls/en_CA.US-ASCII missing (created)
3123:info:destroot ./share/nls/en_GB.ISO8859-1 missing (created)
3124:info:destroot ./share/nls/en_GB.ISO8859-15 missing (created)
3125:info:destroot ./share/nls/en_GB.US-ASCII missing (created)
3126:info:destroot ./share/nls/en_NZ.ISO8859-1 missing (created)
3127:info:destroot ./share/nls/en_NZ.ISO8859-15 missing (created)
3128:info:destroot ./share/nls/en_NZ.US-ASCII missing (created)
3129:info:destroot ./share/nls/en_US.ISO8859-1 missing (created)
3130:info:destroot ./share/nls/en_US.ISO8859-15 missing (created)
3131:info:destroot ./share/nls/es_ES.ISO8859-1 missing (created)
3132:info:destroot ./share/nls/es_ES.ISO8859-15 missing (created)
3133:info:destroot ./share/nls/et_EE.ISO8859-15 missing (created)
3134:info:destroot ./share/nls/fi_FI.ISO8859-1 missing (created)
3135:info:destroot ./share/nls/fi_FI.ISO8859-15 missing (created)
3136:info:destroot ./share/nls/fr_BE.ISO8859-1 missing (created)
3137:info:destroot ./share/nls/fr_BE.ISO8859-15 missing (created)
3138:info:destroot ./share/nls/fr_CA.ISO8859-1 missing (created)
3139:info:destroot ./share/nls/fr_CA.ISO8859-15 missing (created)
3140:info:destroot ./share/nls/fr_CH.ISO8859-1 missing (created)
3141:info:destroot ./share/nls/fr_CH.ISO8859-15 missing (created)
3142:info:destroot ./share/nls/fr_FR.ISO8859-1 missing (created)
3143:info:destroot ./share/nls/fr_FR.ISO8859-15 missing (created)
3144:info:destroot ./share/nls/hi_IN.ISCII-DEV missing (created)
3145:info:destroot ./share/nls/hr_HR.ISO8859-2 missing (created)
3146:info:destroot ./share/nls/hu_HU.ISO8859-2 missing (created)
3147:info:destroot ./share/nls/is_IS.ISO8859-1 missing (created)
3148:info:destroot ./share/nls/is_IS.ISO8859-15 missing (created)
3149:info:destroot ./share/nls/it_CH.ISO8859-1 missing (created)
3150:info:destroot ./share/nls/it_CH.ISO8859-15 missing (created)
3151:info:destroot ./share/nls/it_IT.ISO8859-1 missing (created)
3152:info:destroot ./share/nls/it_IT.ISO8859-15 missing (created)
3153:info:destroot ./share/nls/ja_JP.SJIS missing (created)
3154:info:destroot ./share/nls/ja_JP.eucJP missing (created)
3155:info:destroot ./share/nls/ko_KR.eucKR missing (created)
3156:info:destroot ./share/nls/la_LN.ISO8859-1 missing (created)
3157:info:destroot ./share/nls/la_LN.ISO8859-15 missing (created)
3158:info:destroot ./share/nls/la_LN.ISO8859-2 missing (created)
3159:info:destroot ./share/nls/la_LN.ISO8859-4 missing (created)
3160:info:destroot ./share/nls/la_LN.US-ASCII missing (created)
3161:info:destroot ./share/nls/lt_LT.ISO8859-4 missing (created)
3162:info:destroot ./share/nls/nl_BE.ISO8859-1 missing (created)
3163:info:destroot ./share/nls/nl_BE.ISO8859-15 missing (created)
3164:info:destroot ./share/nls/nl_NL.ISO8859-1 missing (created)
3165:info:destroot ./share/nls/nl_NL.ISO8859-15 missing (created)
3166:info:destroot ./share/nls/no_NO.ISO8859-1 missing (created)
3167:info:destroot ./share/nls/no_NO.ISO8859-15 missing (created)
3168:info:destroot ./share/nls/pl_PL.ISO8859-2 missing (created)
3169:info:destroot ./share/nls/pt_BR.ISO8859-1 missing (created)
3170:info:destroot ./share/nls/pt_PT.ISO8859-1 missing (created)
3171:info:destroot ./share/nls/pt_PT.ISO8859-15 missing (created)
3172:info:destroot ./share/nls/ro_RO.ISO8859-2 missing (created)
3173:info:destroot ./share/nls/ru_RU.CP866 missing (created)
3174:info:destroot ./share/nls/ru_RU.ISO8859-5 missing (created)
3175:info:destroot ./share/nls/ru_RU.KOI8-R missing (created)
3176:info:destroot ./share/nls/sk_SK.ISO8859-2 missing (created)
3177:info:destroot ./share/nls/sl_SI.ISO8859-2 missing (created)
3178:info:destroot ./share/nls/sv_SE.ISO8859-1 missing (created)
3179:info:destroot ./share/nls/sv_SE.ISO8859-15 missing (created)
3180:info:destroot ./share/nls/tr_TR.ISO8859-9 missing (created)
3181:info:destroot ./share/nls/uk_UA.ISO8859-5 missing (created)
3182:info:destroot ./share/nls/uk_UA.KOI8-U missing (created)
3183:info:destroot ./share/nls/zh_CN.eucCN missing (created)
3184:info:destroot ./share/nls/zh_TW.Big5 missing (created)
3185:info:destroot ./share/skel missing (created)
3186:info:destroot ./src missing (created)
3187:info:destroot ./var missing (created)
3188:info:destroot ./www missing (created)
3189:debug:destroot Tracelib Sandbox is:
3190:debug:destroot         /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work=+
3191:debug:destroot         /Users/rkirian/work/git/macports/science/crystfel=+
3192:debug:destroot         /opt/local/var/macports/distfiles/crystfel=+
3193:debug:destroot         /bin=+
3194:debug:destroot         /sbin=+
3195:debug:destroot         /dev=+
3196:debug:destroot         /usr/bin=+
3197:debug:destroot         /usr/sbin=+
3198:debug:destroot         /usr/include=+
3199:debug:destroot         /usr/lib=+
3200:debug:destroot         /usr/libexec=+
3201:debug:destroot         /usr/share=+
3202:debug:destroot         /System/Library=+
3203:debug:destroot         /Library/Frameworks=-
3204:debug:destroot         /Library=+
3205:debug:destroot         /etc/passwd=+
3206:debug:destroot         /private/etc/passwd=+
3207:debug:destroot         /etc/groups=+
3208:debug:destroot         /private/etc/groups=+
3209:debug:destroot         /etc/localtime=+
3210:debug:destroot         /private/etc/localtime=+
3211:debug:destroot         /tmp=+
3212:debug:destroot         /var/tmp=+
3213:debug:destroot         /private/var/tmp=+
3214:debug:destroot         /var/folders=+
3215:debug:destroot         /private/var/folders=+
3216:debug:destroot         /var/empty=+
3217:debug:destroot         /private/var/empty=+
3218:debug:destroot         /var/run=+
3219:debug:destroot         /private/var/run=+
3220:debug:destroot         /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.tmp=+
3221:debug:destroot         /var/db/xcode_select_link=+
3222:debug:destroot         /private/var/db/xcode_select_link=+
3223:debug:destroot         /var/db/mds=+
3224:debug:destroot         /private/var/db/mds=+
3225:debug:destroot         /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist=+
3226:debug:destroot         /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/Library/Preferences/com.apple.dt.Xcode.plist=+
3227:debug:destroot         /Applications/Xcode.app=+
3228:debug:destroot         /var/db/launchd.db=+
3229:debug:destroot         /private/var/db/launchd.db=+
3230:debug:destroot         /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/.ccache=+
3231:debug:destroot         /opt/local/var/macports/build/.ccache=+
3232:debug:destroot         /opt/local=?
3233:debug:destroot Tracemode will respect recursively collected port dependencies: Xft2 atk bzip2 cairo db48 db_select expat fftw-3 fontconfig freetype gdk-pixbuf2 gettext glib2 gobject-introspection graphite2 gsl gtk2 harfbuzz hdf5 hicolor-icon-theme jasper jpeg libedit libffi libiconv libpixman libpng libtool libxml2 ncurses openssl pango pkgconfig py27-beaker py27-mako py27-markupsafe py27-setuptools python27 python2_select python_select shared-mime-info sqlite3 tiff xorg-compositeproto xorg-damageproto xorg-fixesproto xorg-inputproto xorg-kbproto xorg-libX11 xorg-libXau xorg-libXcomposite xorg-libXcursor xorg-libXdamage xorg-libXdmcp xorg-libXext xorg-libXfixes xorg-libXi xorg-libXinerama xorg-libXrandr xorg-libpthread-stubs xorg-libxcb xorg-randrproto xorg-renderproto xorg-xcb-proto xorg-xcb-util xorg-xextproto xorg-xineramaproto xorg-xproto xrender xz zlib
3234:debug:destroot Executing org.macports.destroot (crystfel)
3235:debug:destroot Environment:
3236CC_PRINT_OPTIONS='YES'
3237CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.CC_PRINT_OPTIONS'
3238CPATH='/opt/local/include'
3239LIBRARY_PATH='/opt/local/lib'
3240MACOSX_DEPLOYMENT_TARGET='10.10'
3241:debug:destroot Assembled command: 'cd "/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1" && /usr/bin/make -w install DESTDIR=/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot'
3242:debug:destroot Executing command line:  cd "/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1" && /usr/bin/make -w install DESTDIR=/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot
3243:info:destroot make: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1'
3244:info:destroot Making install in lib
3245:info:destroot make[1]: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/lib'
3246:info:destroot /Applications/Xcode.app/Contents/Developer/usr/bin/make  install-recursive
3247:info:destroot make[2]: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/lib'
3248:info:destroot make[3]: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/lib'
3249:info:destroot make[4]: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/lib'
3250:info:destroot make[4]: Nothing to be done for `install-exec-am'.
3251:info:destroot make[4]: Nothing to be done for `install-data-am'.
3252:info:destroot make[4]: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/lib'
3253:info:destroot make[3]: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/lib'
3254:info:destroot make[2]: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/lib'
3255:info:destroot make[1]: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/lib'
3256:info:destroot Making install in doc/reference/libcrystfel
3257:info:destroot make[1]: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/doc/reference/libcrystfel'
3258:info:destroot make[2]: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/doc/reference/libcrystfel'
3259:info:destroot make[2]: Nothing to be done for `install-exec-am'.
3260:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-Crystal.html
3261:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-Detector.html
3262:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-Image.html
3263:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-Integer-matrices.html
3264:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-Quaternion.html
3265:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-RefList-utilities.html
3266:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-RefList.html
3267:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-Statistics.html
3268:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-Symmetry.html
3269:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-The-thread-pool.html
3270:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-Unit-cell-utilities.html
3271:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-UnitCell.html
3272:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-Utilities.html
3273:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-coding-standards.html
3274:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-events.html
3275:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-filter.html
3276:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-geometry.html
3277:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-hdf5-file.html
3278:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-histogram.html
3279:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-indexing.html
3280:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-integration.html
3281:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-peaks.html
3282:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-predict-refine.html
3283:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-render.html
3284:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL-stream.html
3285:info:destroot  /usr/bin/install -c -m 644 ./html/CrystFEL.devhelp2
3286:info:destroot  /usr/bin/install -c -m 644 ./html/api-index-full.html
3287:info:destroot  /usr/bin/install -c -m 644 ./html/ch01.html
3288:info:destroot  /usr/bin/install -c -m 644 ./html/ch02.html
3289:info:destroot  /usr/bin/install -c -m 644 ./html/ch03.html
3290:info:destroot  /usr/bin/install -c -m 644 ./html/ch04.html
3291:info:destroot  /usr/bin/install -c -m 644 ./html/ch05.html
3292:info:destroot  /usr/bin/install -c -m 644 ./html/ch06.html
3293:info:destroot  /usr/bin/install -c -m 644 ./html/ch07.html
3294:info:destroot  /usr/bin/install -c -m 644 ./html/ch08.html
3295:info:destroot  /usr/bin/install -c -m 644 ./html/ch09.html
3296:info:destroot  /usr/bin/install -c -m 644 ./html/ch10.html
3297:info:destroot  /usr/bin/install -c -m 644 ./html/ch11.html
3298:info:destroot  /usr/bin/install -c -m 644 ./html/ch12.html
3299:info:destroot  /usr/bin/install -c -m 644 ./html/ch13.html
3300:info:destroot  /usr/bin/install -c -m 644 ./html/ch14.html
3301:info:destroot  /usr/bin/install -c -m 644 ./html/ch15.html
3302:info:destroot  /usr/bin/install -c -m 644 ./html/ch16.html
3303:info:destroot  /usr/bin/install -c -m 644 ./html/ch17.html
3304:info:destroot  /usr/bin/install -c -m 644 ./html/ch18.html
3305:info:destroot  /usr/bin/install -c -m 644 ./html/ch19.html
3306:info:destroot  /usr/bin/install -c -m 644 ./html/ch20.html
3307:info:destroot  /usr/bin/install -c -m 644 ./html/ch21.html
3308:info:destroot  /usr/bin/install -c -m 644 ./html/home.png
3309:info:destroot  /usr/bin/install -c -m 644 ./html/index.html
3310:info:destroot  /usr/bin/install -c -m 644 ./html/index.sgml
3311:info:destroot  /usr/bin/install -c -m 644 ./html/left-insensitive.png
3312:info:destroot  /usr/bin/install -c -m 644 ./html/left.png
3313:info:destroot  /usr/bin/install -c -m 644 ./html/right-insensitive.png
3314:info:destroot  /usr/bin/install -c -m 644 ./html/right.png
3315:info:destroot  /usr/bin/install -c -m 644 ./html/style.css
3316:info:destroot  /usr/bin/install -c -m 644 ./html/up-insensitive.png
3317:info:destroot  /usr/bin/install -c -m 644 ./html/up.png
3318:info:destroot make[2]: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/doc/reference/libcrystfel'
3319:info:destroot make[1]: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/doc/reference/libcrystfel'
3320:info:destroot Making install in libcrystfel
3321:info:destroot make[1]: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/libcrystfel'
3322:info:destroot make[2]: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/libcrystfel'
3323:info:destroot  ../build-aux/install-sh -c -d '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/lib'
3324:info:destroot  /bin/sh ../libtool   --mode=install /usr/bin/install -c   libcrystfel.la '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/lib'
3325:info:destroot libtool: install: /usr/bin/install -c .libs/libcrystfel.7.dylib /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/lib/libcrystfel.7.dylib
3326:info:destroot libtool: install: (cd /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/lib && { ln -s -f libcrystfel.7.dylib libcrystfel.dylib || { rm -f libcrystfel.dylib && ln -s libcrystfel.7.dylib libcrystfel.dylib; }; })
3327:info:destroot libtool: install: /usr/bin/install -c .libs/libcrystfel.lai /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/lib/libcrystfel.la
3328:info:destroot libtool: install: /usr/bin/install -c .libs/libcrystfel.a /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/lib/libcrystfel.a
3329:info:destroot libtool: install: chmod 644 /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/lib/libcrystfel.a
3330:info:destroot libtool: install: ranlib /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/lib/libcrystfel.a
3331:info:destroot /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/lib/libcrystfel.a(fd-hook.o) has no symbols
3332:info:destroot /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/lib/libcrystfel.a(sys_socket.o) has no symbols
3333:info:destroot /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/lib/libcrystfel.a(unistd.o) has no symbols
3334:info:destroot libtool: install: warning: remember to run `libtool --finish /opt/local/lib'
3335:info:destroot  ../build-aux/install-sh -c -d '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/'
3336:info:destroot  /usr/bin/install -c -m 644 ../version.h src/hdf5-file.h src/reflist.h src/symmetry.h src/cell.h src/reflist-utils.h src/thread-pool.h src/statistics.h src/utils.h src/detector.h src/geometry.h src/peaks.h src/stream.h src/render.h src/index.h src/image.h src/filters.h src/dirax.h src/mosflm.h src/cell-utils.h src/integer_matrix.h src/crystal.h src/xds.h src/predict-refine.h src/integration.h src/histogram.h src/events.h src/asdf.h '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/'
3337:info:destroot  ../build-aux/install-sh -c -d '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/lib/pkgconfig'
3338:info:destroot  /usr/bin/install -c -m 644 crystfel.pc '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/lib/pkgconfig'
3339:info:destroot make[2]: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/libcrystfel'
3340:info:destroot make[1]: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1/libcrystfel'
3341:info:destroot make[1]: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1'
3342:info:destroot make[2]: Entering directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1'
3343:info:destroot  build-aux/install-sh -c -d '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin'
3344:info:destroot   /bin/sh ./libtool   --mode=install /usr/bin/install -c src/pattern_sim src/process_hkl src/get_hkl src/indexamajig src/compare_hkl src/partialator src/check_hkl src/partial_sim src/ambigator src/geoptimiser src/whirligig src/list_events src/hdfsee src/cell_explorer src/render_hkl '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin'
3345:info:destroot libtool: install: warning: `./libcrystfel/libcrystfel.la' has not been installed in `/opt/local/lib'
3346:info:destroot libtool: install: /usr/bin/install -c src/.libs/pattern_sim /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/pattern_sim
3347:info:destroot libtool: install: warning: `./libcrystfel/libcrystfel.la' has not been installed in `/opt/local/lib'
3348:info:destroot libtool: install: /usr/bin/install -c src/.libs/process_hkl /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/process_hkl
3349:info:destroot libtool: install: warning: `./libcrystfel/libcrystfel.la' has not been installed in `/opt/local/lib'
3350:info:destroot libtool: install: /usr/bin/install -c src/.libs/get_hkl /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/get_hkl
3351:info:destroot libtool: install: warning: `./libcrystfel/libcrystfel.la' has not been installed in `/opt/local/lib'
3352:info:destroot libtool: install: /usr/bin/install -c src/.libs/indexamajig /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/indexamajig
3353:info:destroot libtool: install: warning: `./libcrystfel/libcrystfel.la' has not been installed in `/opt/local/lib'
3354:info:destroot libtool: install: /usr/bin/install -c src/.libs/compare_hkl /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/compare_hkl
3355:info:destroot libtool: install: warning: `./libcrystfel/libcrystfel.la' has not been installed in `/opt/local/lib'
3356:info:destroot libtool: install: /usr/bin/install -c src/.libs/partialator /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/partialator
3357:info:destroot libtool: install: warning: `./libcrystfel/libcrystfel.la' has not been installed in `/opt/local/lib'
3358:info:destroot libtool: install: /usr/bin/install -c src/.libs/check_hkl /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/check_hkl
3359:info:destroot libtool: install: warning: `./libcrystfel/libcrystfel.la' has not been installed in `/opt/local/lib'
3360:info:destroot libtool: install: /usr/bin/install -c src/.libs/partial_sim /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/partial_sim
3361:info:destroot libtool: install: warning: `./libcrystfel/libcrystfel.la' has not been installed in `/opt/local/lib'
3362:info:destroot libtool: install: /usr/bin/install -c src/.libs/ambigator /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/ambigator
3363:info:destroot libtool: install: warning: `./libcrystfel/libcrystfel.la' has not been installed in `/opt/local/lib'
3364:info:destroot libtool: install: /usr/bin/install -c src/.libs/geoptimiser /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/geoptimiser
3365:info:destroot libtool: install: warning: `./libcrystfel/libcrystfel.la' has not been installed in `/opt/local/lib'
3366:info:destroot libtool: install: /usr/bin/install -c src/.libs/whirligig /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/whirligig
3367:info:destroot libtool: install: warning: `./libcrystfel/libcrystfel.la' has not been installed in `/opt/local/lib'
3368:info:destroot libtool: install: /usr/bin/install -c src/.libs/list_events /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/list_events
3369:info:destroot libtool: install: warning: `./libcrystfel/libcrystfel.la' has not been installed in `/opt/local/lib'
3370:info:destroot libtool: install: /usr/bin/install -c src/.libs/hdfsee /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/hdfsee
3371:info:destroot libtool: install: warning: `./libcrystfel/libcrystfel.la' has not been installed in `/opt/local/lib'
3372:info:destroot libtool: install: /usr/bin/install -c src/.libs/cell_explorer /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/cell_explorer
3373:info:destroot libtool: install: warning: `./libcrystfel/libcrystfel.la' has not been installed in `/opt/local/lib'
3374:info:destroot libtool: install: /usr/bin/install -c src/.libs/render_hkl /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/render_hkl
3375:info:destroot  build-aux/install-sh -c -d '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/crystfel'
3376:info:destroot  /usr/bin/install -c -m 644 data/diffraction.cl data/hdfsee.ui '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/crystfel'
3377:info:destroot  build-aux/install-sh -c -d '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/doc/crystfel'
3378:info:destroot  /usr/bin/install -c -m 644 doc/twin-calculator.pdf doc/examples/lcls-dec.geom doc/examples/lcls-june-r0013-r0128.geom doc/examples/lcls-xpp-estimate.geom doc/examples/simple.geom doc/examples/cspad-single.geom doc/examples/cspad-cxiformat.geom doc/examples/pilatus.geom doc/examples/cell-example.cell doc/hitrate.html doc/hitrate.png '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/doc/crystfel'
3379:info:destroot  build-aux/install-sh -c -d '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man1'
3380:info:destroot  /usr/bin/install -c -m 644 doc/man/check_hkl.1 doc/man/compare_hkl.1 doc/man/get_hkl.1 doc/man/hdfsee.1 doc/man/indexamajig.1 doc/man/partialator.1 doc/man/partial_sim.1 doc/man/pattern_sim.1 doc/man/process_hkl.1 doc/man/render_hkl.1 doc/man/cell_explorer.1 doc/man/ambigator.1 doc/man/geoptimiser.1 doc/man/whirligig.1 '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man1'
3381:info:destroot  build-aux/install-sh -c -d '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man5'
3382:info:destroot  /usr/bin/install -c -m 644 doc/man/crystfel_geometry.5 '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man5'
3383:info:destroot  build-aux/install-sh -c -d '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man7'
3384:info:destroot  /usr/bin/install -c -m 644 doc/man/crystfel.7 '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man7'
3385:info:destroot  build-aux/install-sh -c -d '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/doc/crystfel/scripts'
3386:info:destroot  /usr/bin/install -c -m 644 scripts/alternate-stream scripts/cell-please scripts/check-hkl-completeness.gp scripts/check-hkl-quality.gp scripts/check-near-bragg scripts/check-peak-detection scripts/cif2hkl scripts/compare-hkl.gp scripts/create-mtz scripts/create-xscale scripts/eV-to-A scripts/find-filename scripts/gen-sfs scripts/gen-sfs-ano scripts/hkl2hkl scripts/indexed-filenames scripts/mtz2hkl scripts/peak-intensity scripts/random-image scripts/README scripts/sequence-image scripts/split-indexed scripts/stream_grep scripts/zone-axes scripts/Rsplit_surface scripts/Rsplit_surface.py scripts/clean-stream.py scripts/fg-graph scripts/truncate-stream scripts/gen-sfs-expand scripts/add-beam-params scripts/find-pairs scripts/plot-cc-and-scale.R scripts/ave-resolution scripts/crystal-frame-number scripts/plot-radius-resolution scripts/plot-predict-refine scripts/detector-shift scripts/turbo-index '/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/doc/crystfel/scripts'
3387:info:destroot make[2]: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1'
3388:info:destroot make[1]: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1'
3389:info:destroot make: Leaving directory `/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/crystfel-0.6.1'
3390:warn:destroot The following existing files were hidden from the build system by trace mode:
3391:msg:destroot   /opt/local/bin/ranlib
3392:msg:destroot   /var/root/.CFUserTextEncoding
3393:info:destroot The following files would have been hidden from the build system by trace mode if they existed:
3394:info:destroot   /AppleInternal
3395:info:destroot   /AppleInternal/Developer/Toolchains
3396:info:destroot   /Developer
3397:info:destroot   /Info.plist
3398:info:destroot   /etc/asl/.noquota
3399:info:destroot   /usr/gnu/include
3400:info:destroot   /var/root/Library/Application Support/Developer/6.4/Xcode/Build Rules
3401:info:destroot   /var/root/Library/Application Support/Developer/6.4/Xcode/Specifications
3402:info:destroot   /var/root/Library/Application Support/Developer/Shared/Xcode/Build Rules
3403:info:destroot   /var/root/Library/Application Support/Developer/Shared/Xcode/Specifications
3404:debug:destroot Executing portdestroot::destroot_finish
3405:debug:destroot Fixing glibtool .la files in destroot for crystfel
3406:debug:destroot Removing libcrystfel.la
3407:info:destroot --->  Compressing man pages for crystfel
3408:debug:destroot Scanning man1
3409:info:destroot man1/ambigator.1:           63.0% -- replaced with man1/ambigator.1.gz
3410:info:destroot man1/ambigator.1.gz: changing permissions from 00644 to 00444
3411:info:destroot man1/cell_explorer.1:       51.2% -- replaced with man1/cell_explorer.1.gz
3412:info:destroot man1/cell_explorer.1.gz: changing permissions from 00644 to 00444
3413:info:destroot man1/check_hkl.1:           56.3% -- replaced with man1/check_hkl.1.gz
3414:info:destroot man1/check_hkl.1.gz: changing permissions from 00644 to 00444
3415:info:destroot man1/compare_hkl.1:         57.3% -- replaced with man1/compare_hkl.1.gz
3416:info:destroot man1/compare_hkl.1.gz: changing permissions from 00644 to 00444
3417:info:destroot man1/geoptimiser.1:         62.8% -- replaced with man1/geoptimiser.1.gz
3418:info:destroot man1/geoptimiser.1.gz: changing permissions from 00644 to 00444
3419:info:destroot man1/get_hkl.1:     58.5% -- replaced with man1/get_hkl.1.gz
3420:info:destroot man1/get_hkl.1.gz: changing permissions from 00644 to 00444
3421:info:destroot man1/hdfsee.1:      58.9% -- replaced with man1/hdfsee.1.gz
3422:info:destroot man1/hdfsee.1.gz: changing permissions from 00644 to 00444
3423:info:destroot man1/indexamajig.1:         66.4% -- replaced with man1/indexamajig.1.gz
3424:info:destroot man1/indexamajig.1.gz: changing permissions from 00644 to 00444
3425:info:destroot man1/partial_sim.1:         62.6% -- replaced with man1/partial_sim.1.gz
3426:info:destroot man1/partial_sim.1.gz: changing permissions from 00644 to 00444
3427:info:destroot man1/partialator.1:         63.6% -- replaced with man1/partialator.1.gz
3428:info:destroot man1/partialator.1.gz: changing permissions from 00644 to 00444
3429:info:destroot man1/pattern_sim.1:         58.6% -- replaced with man1/pattern_sim.1.gz
3430:info:destroot man1/pattern_sim.1.gz: changing permissions from 00644 to 00444
3431:info:destroot man1/process_hkl.1:         60.2% -- replaced with man1/process_hkl.1.gz
3432:info:destroot man1/process_hkl.1.gz: changing permissions from 00644 to 00444
3433:info:destroot man1/render_hkl.1:          58.1% -- replaced with man1/render_hkl.1.gz
3434:info:destroot man1/render_hkl.1.gz: changing permissions from 00644 to 00444
3435:info:destroot man1/whirligig.1:           49.5% -- replaced with man1/whirligig.1.gz
3436:info:destroot man1/whirligig.1.gz: changing permissions from 00644 to 00444
3437:debug:destroot Scanning man5
3438:info:destroot man5/crystfel_geometry.5:           63.6% -- replaced with man5/crystfel_geometry.5.gz
3439:info:destroot man5/crystfel_geometry.5.gz: changing permissions from 00644 to 00444
3440:debug:destroot Scanning man7
3441:info:destroot man7/crystfel.7:    55.7% -- replaced with man7/crystfel.7.gz
3442:info:destroot man7/crystfel.7.gz: changing permissions from 00644 to 00444
3443:debug:destroot checking for mtree violations
3444:debug:destroot changing euid/egid - current euid: 0 - current egid: 0
3445:debug:destroot egid changed to: 501
3446:debug:destroot euid changed to: 502
3447:debug:install install phase started at Thu Aug  6 09:57:42 MST 2015
3448:notice:install --->  Installing crystfel @0.6.1_0
3449:debug:install Can't run install on this port without elevated privileges. Escalating privileges back to root.
3450:debug:install euid changed to: 0. egid changed to: 0.
3451:debug:install Tracelib Sandbox is:
3452:debug:install  /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work=+
3453:debug:install  /Users/rkirian/work/git/macports/science/crystfel=+
3454:debug:install  /opt/local/var/macports/distfiles/crystfel=+
3455:debug:install  /bin=+
3456:debug:install  /sbin=+
3457:debug:install  /dev=+
3458:debug:install  /usr/bin=+
3459:debug:install  /usr/sbin=+
3460:debug:install  /usr/include=+
3461:debug:install  /usr/lib=+
3462:debug:install  /usr/libexec=+
3463:debug:install  /usr/share=+
3464:debug:install  /System/Library=+
3465:debug:install  /Library/Frameworks=-
3466:debug:install  /Library=+
3467:debug:install  /etc/passwd=+
3468:debug:install  /private/etc/passwd=+
3469:debug:install  /etc/groups=+
3470:debug:install  /private/etc/groups=+
3471:debug:install  /etc/localtime=+
3472:debug:install  /private/etc/localtime=+
3473:debug:install  /tmp=+
3474:debug:install  /var/tmp=+
3475:debug:install  /private/var/tmp=+
3476:debug:install  /var/folders=+
3477:debug:install  /private/var/folders=+
3478:debug:install  /var/empty=+
3479:debug:install  /private/var/empty=+
3480:debug:install  /var/run=+
3481:debug:install  /private/var/run=+
3482:debug:install  /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.tmp=+
3483:debug:install  /var/db/xcode_select_link=+
3484:debug:install  /private/var/db/xcode_select_link=+
3485:debug:install  /var/db/mds=+
3486:debug:install  /private/var/db/mds=+
3487:debug:install  /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist=+
3488:debug:install  /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/Library/Preferences/com.apple.dt.Xcode.plist=+
3489:debug:install  /Applications/Xcode.app=+
3490:debug:install  /var/db/launchd.db=+
3491:debug:install  /private/var/db/launchd.db=+
3492:debug:install  /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/.ccache=+
3493:debug:install  /opt/local/var/macports/build/.ccache=+
3494:debug:install  /opt/local=?
3495:debug:install Tracemode will respect recursively collected port dependencies: Xft2 atk bzip2 cairo db48 db_select expat fftw-3 fontconfig freetype gdk-pixbuf2 gettext glib2 gobject-introspection graphite2 gsl gtk2 harfbuzz hdf5 hicolor-icon-theme jasper jpeg libedit libffi libiconv libpixman libpng libtool libxml2 ncurses openssl pango py27-beaker py27-mako py27-markupsafe py27-setuptools python27 python2_select python_select shared-mime-info sqlite3 tiff xorg-compositeproto xorg-damageproto xorg-fixesproto xorg-inputproto xorg-kbproto xorg-libX11 xorg-libXau xorg-libXcomposite xorg-libXcursor xorg-libXdamage xorg-libXdmcp xorg-libXext xorg-libXfixes xorg-libXi xorg-libXinerama xorg-libXrandr xorg-libpthread-stubs xorg-libxcb xorg-randrproto xorg-renderproto xorg-xcb-proto xorg-xcb-util xorg-xextproto xorg-xineramaproto xorg-xproto xrender xz zlib
3496:debug:install Executing org.macports.install (crystfel)
3497:debug:install Using /usr/bin/tar
3498:debug:install Using /usr/bin/bzip2
3499:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/ambigator
3500:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/cell_explorer
3501:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/check_hkl
3502:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/compare_hkl
3503:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/geoptimiser
3504:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/get_hkl
3505:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/hdfsee
3506:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/indexamajig
3507:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/list_events
3508:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/partial_sim
3509:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/partialator
3510:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/pattern_sim
3511:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/process_hkl
3512:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/render_hkl
3513:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/bin/whirligig
3514:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/asdf.h
3515:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/cell-utils.h
3516:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/cell.h
3517:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/crystal.h
3518:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/detector.h
3519:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/dirax.h
3520:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/events.h
3521:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/filters.h
3522:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/geometry.h
3523:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/hdf5-file.h
3524:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/histogram.h
3525:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/image.h
3526:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/index.h
3527:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/integer_matrix.h
3528:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/integration.h
3529:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/mosflm.h
3530:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/peaks.h
3531:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/predict-refine.h
3532:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/reflist-utils.h
3533:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/reflist.h
3534:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/render.h
3535:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/statistics.h
3536:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/stream.h
3537:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/symmetry.h
3538:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/thread-pool.h
3539:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/utils.h
3540:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/version.h
3541:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/include/crystfel/xds.h
3542:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/lib/libcrystfel.7.dylib
3543:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/lib/libcrystfel.a
3544:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/lib/libcrystfel.dylib
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3648:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/doc/crystfel/scripts/sequence-image
3649:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/doc/crystfel/scripts/split-indexed
3650:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/doc/crystfel/scripts/stream_grep
3651:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/doc/crystfel/scripts/truncate-stream
3652:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/doc/crystfel/scripts/turbo-index
3653:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/doc/crystfel/scripts/zone-axes
3654:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/doc/crystfel/simple.geom
3655:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/doc/crystfel/twin-calculator.pdf
3656:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man1/ambigator.1.gz
3657:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man1/cell_explorer.1.gz
3658:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man1/check_hkl.1.gz
3659:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man1/compare_hkl.1.gz
3660:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man1/geoptimiser.1.gz
3661:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man1/get_hkl.1.gz
3662:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man1/hdfsee.1.gz
3663:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man1/indexamajig.1.gz
3664:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man1/partial_sim.1.gz
3665:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man1/partialator.1.gz
3666:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man1/pattern_sim.1.gz
3667:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man1/process_hkl.1.gz
3668:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man1/render_hkl.1.gz
3669:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man1/whirligig.1.gz
3670:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man5/crystfel_geometry.5.gz
3671:debug:install checksum file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/opt/local/share/man/man7/crystfel.7.gz
3672:debug:install Creating crystfel-0.6.1_0.darwin_14.x86_64.tbz2
3673:debug:install Environment:
3674CC_PRINT_OPTIONS='YES'
3675CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.CC_PRINT_OPTIONS'
3676CPATH='/opt/local/include'
3677LIBRARY_PATH='/opt/local/lib'
3678MACOSX_DEPLOYMENT_TARGET='10.10'
3679:debug:install Assembled command: 'cd "/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot" && /usr/bin/tar -cvf - . | /usr/bin/bzip2 -c9 > /opt/local/var/macports/software/crystfel/crystfel-0.6.1_0.darwin_14.x86_64.tbz2'
3680:debug:install Executing command line:  cd "/opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot" && /usr/bin/tar -cvf - . | /usr/bin/bzip2 -c9 > /opt/local/var/macports/software/crystfel/crystfel-0.6.1_0.darwin_14.x86_64.tbz2
3681:info:install a .
3682:info:install a ./+COMMENT
3683:info:install a ./+CONTENTS
3684:info:install a ./+DESC
3685:info:install a ./+PORTFILE
3686:info:install a ./+STATE
3687:info:install a ./opt
3688:info:install a ./opt/local
3689:info:install a ./opt/local/bin
3690:info:install a ./opt/local/include
3691:info:install a ./opt/local/lib
3692:info:install a ./opt/local/share
3693:info:install a ./opt/local/share/crystfel
3694:info:install a ./opt/local/share/doc
3695:info:install a ./opt/local/share/man
3696:info:install a ./opt/local/share/man/man1
3697:info:install a ./opt/local/share/man/man5
3698:info:install a ./opt/local/share/man/man7
3699:info:install a ./opt/local/share/man/man7/crystfel.7.gz
3700:info:install a ./opt/local/share/man/man5/crystfel_geometry.5.gz
3701:info:install a ./opt/local/share/man/man1/ambigator.1.gz
3702:info:install a ./opt/local/share/man/man1/cell_explorer.1.gz
3703:info:install a ./opt/local/share/man/man1/check_hkl.1.gz
3704:info:install a ./opt/local/share/man/man1/compare_hkl.1.gz
3705:info:install a ./opt/local/share/man/man1/geoptimiser.1.gz
3706:info:install a ./opt/local/share/man/man1/get_hkl.1.gz
3707:info:install a ./opt/local/share/man/man1/hdfsee.1.gz
3708:info:install a ./opt/local/share/man/man1/indexamajig.1.gz
3709:info:install a ./opt/local/share/man/man1/partial_sim.1.gz
3710:info:install a ./opt/local/share/man/man1/partialator.1.gz
3711:info:install a ./opt/local/share/man/man1/pattern_sim.1.gz
3712:info:install a ./opt/local/share/man/man1/process_hkl.1.gz
3713:info:install a ./opt/local/share/man/man1/render_hkl.1.gz
3714:info:install a ./opt/local/share/man/man1/whirligig.1.gz
3715:info:install a ./opt/local/share/doc/crystfel
3716:info:install a ./opt/local/share/doc/crystfel/cell-example.cell
3717:info:install a ./opt/local/share/doc/crystfel/cspad-cxiformat.geom
3718:info:install a ./opt/local/share/doc/crystfel/cspad-single.geom
3719:info:install a ./opt/local/share/doc/crystfel/hitrate.html
3720:info:install a ./opt/local/share/doc/crystfel/hitrate.png
3721:info:install a ./opt/local/share/doc/crystfel/lcls-dec.geom
3722:info:install a ./opt/local/share/doc/crystfel/lcls-june-r0013-r0128.geom
3723:info:install a ./opt/local/share/doc/crystfel/lcls-xpp-estimate.geom
3724:info:install a ./opt/local/share/doc/crystfel/pilatus.geom
3725:info:install a ./opt/local/share/doc/crystfel/reference
3726:info:install a ./opt/local/share/doc/crystfel/scripts
3727:info:install a ./opt/local/share/doc/crystfel/simple.geom
3728:info:install a ./opt/local/share/doc/crystfel/twin-calculator.pdf
3729:info:install a ./opt/local/share/doc/crystfel/scripts/add-beam-params
3730:info:install a ./opt/local/share/doc/crystfel/scripts/alternate-stream
3731:info:install a ./opt/local/share/doc/crystfel/scripts/ave-resolution
3732:info:install a ./opt/local/share/doc/crystfel/scripts/cell-please
3733:info:install a ./opt/local/share/doc/crystfel/scripts/check-hkl-completeness.gp
3734:info:install a ./opt/local/share/doc/crystfel/scripts/check-hkl-quality.gp
3735:info:install a ./opt/local/share/doc/crystfel/scripts/check-near-bragg
3736:info:install a ./opt/local/share/doc/crystfel/scripts/check-peak-detection
3737:info:install a ./opt/local/share/doc/crystfel/scripts/cif2hkl
3738:info:install a ./opt/local/share/doc/crystfel/scripts/clean-stream.py
3739:info:install a ./opt/local/share/doc/crystfel/scripts/compare-hkl.gp
3740:info:install a ./opt/local/share/doc/crystfel/scripts/create-mtz
3741:info:install a ./opt/local/share/doc/crystfel/scripts/create-xscale
3742:info:install a ./opt/local/share/doc/crystfel/scripts/crystal-frame-number
3743:info:install a ./opt/local/share/doc/crystfel/scripts/detector-shift
3744:info:install a ./opt/local/share/doc/crystfel/scripts/eV-to-A
3745:info:install a ./opt/local/share/doc/crystfel/scripts/fg-graph
3746:info:install a ./opt/local/share/doc/crystfel/scripts/find-filename
3747:info:install a ./opt/local/share/doc/crystfel/scripts/find-pairs
3748:info:install a ./opt/local/share/doc/crystfel/scripts/gen-sfs
3749:info:install a ./opt/local/share/doc/crystfel/scripts/gen-sfs-ano
3750:info:install a ./opt/local/share/doc/crystfel/scripts/gen-sfs-expand
3751:info:install a ./opt/local/share/doc/crystfel/scripts/hkl2hkl
3752:info:install a ./opt/local/share/doc/crystfel/scripts/indexed-filenames
3753:info:install a ./opt/local/share/doc/crystfel/scripts/mtz2hkl
3754:info:install a ./opt/local/share/doc/crystfel/scripts/peak-intensity
3755:info:install a ./opt/local/share/doc/crystfel/scripts/plot-cc-and-scale.R
3756:info:install a ./opt/local/share/doc/crystfel/scripts/plot-predict-refine
3757:info:install a ./opt/local/share/doc/crystfel/scripts/plot-radius-resolution
3758:info:install a ./opt/local/share/doc/crystfel/scripts/random-image
3759:info:install a ./opt/local/share/doc/crystfel/scripts/README
3760:info:install a ./opt/local/share/doc/crystfel/scripts/Rsplit_surface
3761:info:install a ./opt/local/share/doc/crystfel/scripts/Rsplit_surface.py
3762:info:install a ./opt/local/share/doc/crystfel/scripts/sequence-image
3763:info:install a ./opt/local/share/doc/crystfel/scripts/split-indexed
3764:info:install a ./opt/local/share/doc/crystfel/scripts/stream_grep
3765:info:install a ./opt/local/share/doc/crystfel/scripts/truncate-stream
3766:info:install a ./opt/local/share/doc/crystfel/scripts/turbo-index
3767:info:install a ./opt/local/share/doc/crystfel/scripts/zone-axes
3768:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel
3769:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL
3770:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/api-index-full.html
3771:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch01.html
3772:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch02.html
3773:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch03.html
3774:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch04.html
3775:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch05.html
3776:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch06.html
3777:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch07.html
3778:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch08.html
3779:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch09.html
3780:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch10.html
3781:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch11.html
3782:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch12.html
3783:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch13.html
3784:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch14.html
3785:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch15.html
3786:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch16.html
3787:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch17.html
3788:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch18.html
3789:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch19.html
3790:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch20.html
3791:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch21.html
3792:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-coding-standards.html
3793:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-Crystal.html
3794:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-Detector.html
3795:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-events.html
3796:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-filter.html
3797:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-geometry.html
3798:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-hdf5-file.html
3799:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-histogram.html
3800:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-Image.html
3801:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-indexing.html
3802:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-Integer-matrices.html
3803:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-integration.html
3804:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-peaks.html
3805:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-predict-refine.html
3806:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-Quaternion.html
3807:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-RefList-utilities.html
3808:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-RefList.html
3809:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-render.html
3810:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-Statistics.html
3811:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-stream.html
3812:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-Symmetry.html
3813:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-The-thread-pool.html
3814:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-Unit-cell-utilities.html
3815:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-UnitCell.html
3816:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-Utilities.html
3817:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL.devhelp2
3818:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/home.png
3819:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/index.html
3820:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/index.sgml
3821:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/left-insensitive.png
3822:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/left.png
3823:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/right-insensitive.png
3824:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/right.png
3825:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/style.css
3826:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/up-insensitive.png
3827:info:install a ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/up.png
3828:info:install a ./opt/local/share/crystfel/diffraction.cl
3829:info:install a ./opt/local/share/crystfel/hdfsee.ui
3830:info:install a ./opt/local/lib/libcrystfel.7.dylib
3831:info:install a ./opt/local/lib/libcrystfel.a
3832:info:install a ./opt/local/lib/libcrystfel.dylib
3833:info:install a ./opt/local/lib/pkgconfig
3834:info:install a ./opt/local/lib/pkgconfig/crystfel.pc
3835:info:install a ./opt/local/include/crystfel
3836:info:install a ./opt/local/include/crystfel/asdf.h
3837:info:install a ./opt/local/include/crystfel/cell-utils.h
3838:info:install a ./opt/local/include/crystfel/cell.h
3839:info:install a ./opt/local/include/crystfel/crystal.h
3840:info:install a ./opt/local/include/crystfel/detector.h
3841:info:install a ./opt/local/include/crystfel/dirax.h
3842:info:install a ./opt/local/include/crystfel/events.h
3843:info:install a ./opt/local/include/crystfel/filters.h
3844:info:install a ./opt/local/include/crystfel/geometry.h
3845:info:install a ./opt/local/include/crystfel/hdf5-file.h
3846:info:install a ./opt/local/include/crystfel/histogram.h
3847:info:install a ./opt/local/include/crystfel/image.h
3848:info:install a ./opt/local/include/crystfel/index.h
3849:info:install a ./opt/local/include/crystfel/integer_matrix.h
3850:info:install a ./opt/local/include/crystfel/integration.h
3851:info:install a ./opt/local/include/crystfel/mosflm.h
3852:info:install a ./opt/local/include/crystfel/peaks.h
3853:info:install a ./opt/local/include/crystfel/predict-refine.h
3854:info:install a ./opt/local/include/crystfel/reflist-utils.h
3855:info:install a ./opt/local/include/crystfel/reflist.h
3856:info:install a ./opt/local/include/crystfel/render.h
3857:info:install a ./opt/local/include/crystfel/statistics.h
3858:info:install a ./opt/local/include/crystfel/stream.h
3859:info:install a ./opt/local/include/crystfel/symmetry.h
3860:info:install a ./opt/local/include/crystfel/thread-pool.h
3861:info:install a ./opt/local/include/crystfel/utils.h
3862:info:install a ./opt/local/include/crystfel/version.h
3863:info:install a ./opt/local/include/crystfel/xds.h
3864:info:install a ./opt/local/bin/ambigator
3865:info:install a ./opt/local/bin/cell_explorer
3866:info:install a ./opt/local/bin/check_hkl
3867:info:install a ./opt/local/bin/compare_hkl
3868:info:install a ./opt/local/bin/geoptimiser
3869:info:install a ./opt/local/bin/get_hkl
3870:info:install a ./opt/local/bin/hdfsee
3871:info:install a ./opt/local/bin/indexamajig
3872:info:install a ./opt/local/bin/list_events
3873:info:install a ./opt/local/bin/partial_sim
3874:info:install a ./opt/local/bin/partialator
3875:info:install a ./opt/local/bin/pattern_sim
3876:info:install a ./opt/local/bin/process_hkl
3877:info:install a ./opt/local/bin/render_hkl
3878:info:install a ./opt/local/bin/whirligig
3879:debug:install Archive crystfel-0.6.1_0.darwin_14.x86_64.tbz2 packaged
3880:debug:install removing file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/+COMMENT
3881:debug:install removing file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/+CONTENTS
3882:debug:install removing file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/+DESC
3883:debug:install removing file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/+PORTFILE
3884:debug:install removing file: /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/destroot/+STATE
3885:debug:activate activate phase started at Thu Aug  6 09:57:42 MST 2015
3886:debug:activate Tracelib Sandbox is:
3887:debug:activate         /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work=+
3888:debug:activate         /Users/rkirian/work/git/macports/science/crystfel=+
3889:debug:activate         /opt/local/var/macports/distfiles/crystfel=+
3890:debug:activate         /bin=+
3891:debug:activate         /sbin=+
3892:debug:activate         /dev=+
3893:debug:activate         /usr/bin=+
3894:debug:activate         /usr/sbin=+
3895:debug:activate         /usr/include=+
3896:debug:activate         /usr/lib=+
3897:debug:activate         /usr/libexec=+
3898:debug:activate         /usr/share=+
3899:debug:activate         /System/Library=+
3900:debug:activate         /Library/Frameworks=-
3901:debug:activate         /Library=+
3902:debug:activate         /etc/passwd=+
3903:debug:activate         /private/etc/passwd=+
3904:debug:activate         /etc/groups=+
3905:debug:activate         /private/etc/groups=+
3906:debug:activate         /etc/localtime=+
3907:debug:activate         /private/etc/localtime=+
3908:debug:activate         /tmp=+
3909:debug:activate         /var/tmp=+
3910:debug:activate         /private/var/tmp=+
3911:debug:activate         /var/folders=+
3912:debug:activate         /private/var/folders=+
3913:debug:activate         /var/empty=+
3914:debug:activate         /private/var/empty=+
3915:debug:activate         /var/run=+
3916:debug:activate         /private/var/run=+
3917:debug:activate         /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.tmp=+
3918:debug:activate         /var/db/xcode_select_link=+
3919:debug:activate         /private/var/db/xcode_select_link=+
3920:debug:activate         /var/db/mds=+
3921:debug:activate         /private/var/db/mds=+
3922:debug:activate         /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist=+
3923:debug:activate         /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/Library/Preferences/com.apple.dt.Xcode.plist=+
3924:debug:activate         /Applications/Xcode.app=+
3925:debug:activate         /var/db/launchd.db=+
3926:debug:activate         /private/var/db/launchd.db=+
3927:debug:activate         /opt/local/var/macports/build/_Users_rkirian_work_git_macports_science_crystfel/crystfel/work/.home/.ccache=+
3928:debug:activate         /opt/local/var/macports/build/.ccache=+
3929:debug:activate         /opt/local=?
3930:debug:activate Tracemode will respect recursively collected port dependencies: Xft2 atk bzip2 cairo db48 db_select expat fftw-3 fontconfig freetype gdk-pixbuf2 gettext glib2 gobject-introspection graphite2 gsl gtk2 harfbuzz hdf5 hicolor-icon-theme jasper jpeg libedit libffi libiconv libpixman libpng libtool libxml2 ncurses openssl pango py27-beaker py27-mako py27-markupsafe py27-setuptools python27 python2_select python_select shared-mime-info sqlite3 tiff xorg-compositeproto xorg-damageproto xorg-fixesproto xorg-inputproto xorg-kbproto xorg-libX11 xorg-libXau xorg-libXcomposite xorg-libXcursor xorg-libXdamage xorg-libXdmcp xorg-libXext xorg-libXfixes xorg-libXi xorg-libXinerama xorg-libXrandr xorg-libpthread-stubs xorg-libxcb xorg-randrproto xorg-renderproto xorg-xcb-proto xorg-xcb-util xorg-xextproto xorg-xineramaproto xorg-xproto xrender xz zlib
3931:debug:activate Executing org.macports.activate (crystfel)
3932:msg:activate --->  Activating crystfel @0.6.1_0
3933:debug:activate Using /usr/bin/tar
3934:debug:activate Using /usr/bin/bzip2
3935:info:activate x ./
3936:info:activate x ./+COMMENT
3937:info:activate x ./+CONTENTS
3938:info:activate x ./+DESC
3939:info:activate x ./+PORTFILE
3940:info:activate x ./+STATE
3941:info:activate x ./opt/
3942:info:activate x ./opt/local/
3943:info:activate x ./opt/local/bin/
3944:info:activate x ./opt/local/include/
3945:info:activate x ./opt/local/lib/
3946:info:activate x ./opt/local/share/
3947:info:activate x ./opt/local/share/crystfel/
3948:info:activate x ./opt/local/share/doc/
3949:info:activate x ./opt/local/share/man/
3950:info:activate x ./opt/local/share/man/man1/
3951:info:activate x ./opt/local/share/man/man5/
3952:info:activate x ./opt/local/share/man/man7/
3953:info:activate x ./opt/local/share/man/man7/crystfel.7.gz
3954:info:activate x ./opt/local/share/man/man5/crystfel_geometry.5.gz
3955:info:activate x ./opt/local/share/man/man1/ambigator.1.gz
3956:info:activate x ./opt/local/share/man/man1/cell_explorer.1.gz
3957:info:activate x ./opt/local/share/man/man1/check_hkl.1.gz
3958:info:activate x ./opt/local/share/man/man1/compare_hkl.1.gz
3959:info:activate x ./opt/local/share/man/man1/geoptimiser.1.gz
3960:info:activate x ./opt/local/share/man/man1/get_hkl.1.gz
3961:info:activate x ./opt/local/share/man/man1/hdfsee.1.gz
3962:info:activate x ./opt/local/share/man/man1/indexamajig.1.gz
3963:info:activate x ./opt/local/share/man/man1/partial_sim.1.gz
3964:info:activate x ./opt/local/share/man/man1/partialator.1.gz
3965:info:activate x ./opt/local/share/man/man1/pattern_sim.1.gz
3966:info:activate x ./opt/local/share/man/man1/process_hkl.1.gz
3967:info:activate x ./opt/local/share/man/man1/render_hkl.1.gz
3968:info:activate x ./opt/local/share/man/man1/whirligig.1.gz
3969:info:activate x ./opt/local/share/doc/crystfel/
3970:info:activate x ./opt/local/share/doc/crystfel/cell-example.cell
3971:info:activate x ./opt/local/share/doc/crystfel/cspad-cxiformat.geom
3972:info:activate x ./opt/local/share/doc/crystfel/cspad-single.geom
3973:info:activate x ./opt/local/share/doc/crystfel/hitrate.html
3974:info:activate x ./opt/local/share/doc/crystfel/hitrate.png
3975:info:activate x ./opt/local/share/doc/crystfel/lcls-dec.geom
3976:info:activate x ./opt/local/share/doc/crystfel/lcls-june-r0013-r0128.geom
3977:info:activate x ./opt/local/share/doc/crystfel/lcls-xpp-estimate.geom
3978:info:activate x ./opt/local/share/doc/crystfel/pilatus.geom
3979:info:activate x ./opt/local/share/doc/crystfel/reference/
3980:info:activate x ./opt/local/share/doc/crystfel/scripts/
3981:info:activate x ./opt/local/share/doc/crystfel/simple.geom
3982:info:activate x ./opt/local/share/doc/crystfel/twin-calculator.pdf
3983:info:activate x ./opt/local/share/doc/crystfel/scripts/add-beam-params
3984:info:activate x ./opt/local/share/doc/crystfel/scripts/alternate-stream
3985:info:activate x ./opt/local/share/doc/crystfel/scripts/ave-resolution
3986:info:activate x ./opt/local/share/doc/crystfel/scripts/cell-please
3987:info:activate x ./opt/local/share/doc/crystfel/scripts/check-hkl-completeness.gp
3988:info:activate x ./opt/local/share/doc/crystfel/scripts/check-hkl-quality.gp
3989:info:activate x ./opt/local/share/doc/crystfel/scripts/check-near-bragg
3990:info:activate x ./opt/local/share/doc/crystfel/scripts/check-peak-detection
3991:info:activate x ./opt/local/share/doc/crystfel/scripts/cif2hkl
3992:info:activate x ./opt/local/share/doc/crystfel/scripts/clean-stream.py
3993:info:activate x ./opt/local/share/doc/crystfel/scripts/compare-hkl.gp
3994:info:activate x ./opt/local/share/doc/crystfel/scripts/create-mtz
3995:info:activate x ./opt/local/share/doc/crystfel/scripts/create-xscale
3996:info:activate x ./opt/local/share/doc/crystfel/scripts/crystal-frame-number
3997:info:activate x ./opt/local/share/doc/crystfel/scripts/detector-shift
3998:info:activate x ./opt/local/share/doc/crystfel/scripts/eV-to-A
3999:info:activate x ./opt/local/share/doc/crystfel/scripts/fg-graph
4000:info:activate x ./opt/local/share/doc/crystfel/scripts/find-filename
4001:info:activate x ./opt/local/share/doc/crystfel/scripts/find-pairs
4002:info:activate x ./opt/local/share/doc/crystfel/scripts/gen-sfs
4003:info:activate x ./opt/local/share/doc/crystfel/scripts/gen-sfs-ano
4004:info:activate x ./opt/local/share/doc/crystfel/scripts/gen-sfs-expand
4005:info:activate x ./opt/local/share/doc/crystfel/scripts/hkl2hkl
4006:info:activate x ./opt/local/share/doc/crystfel/scripts/indexed-filenames
4007:info:activate x ./opt/local/share/doc/crystfel/scripts/mtz2hkl
4008:info:activate x ./opt/local/share/doc/crystfel/scripts/peak-intensity
4009:info:activate x ./opt/local/share/doc/crystfel/scripts/plot-cc-and-scale.R
4010:info:activate x ./opt/local/share/doc/crystfel/scripts/plot-predict-refine
4011:info:activate x ./opt/local/share/doc/crystfel/scripts/plot-radius-resolution
4012:info:activate x ./opt/local/share/doc/crystfel/scripts/random-image
4013:info:activate x ./opt/local/share/doc/crystfel/scripts/README
4014:info:activate x ./opt/local/share/doc/crystfel/scripts/Rsplit_surface
4015:info:activate x ./opt/local/share/doc/crystfel/scripts/Rsplit_surface.py
4016:info:activate x ./opt/local/share/doc/crystfel/scripts/sequence-image
4017:info:activate x ./opt/local/share/doc/crystfel/scripts/split-indexed
4018:info:activate x ./opt/local/share/doc/crystfel/scripts/stream_grep
4019:info:activate x ./opt/local/share/doc/crystfel/scripts/truncate-stream
4020:info:activate x ./opt/local/share/doc/crystfel/scripts/turbo-index
4021:info:activate x ./opt/local/share/doc/crystfel/scripts/zone-axes
4022:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/
4023:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/
4024:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/api-index-full.html
4025:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch01.html
4026:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch02.html
4027:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch03.html
4028:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch04.html
4029:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch05.html
4030:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch06.html
4031:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch07.html
4032:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch08.html
4033:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch09.html
4034:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch10.html
4035:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch11.html
4036:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch12.html
4037:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch13.html
4038:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch14.html
4039:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch15.html
4040:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch16.html
4041:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch17.html
4042:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch18.html
4043:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch19.html
4044:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch20.html
4045:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/ch21.html
4046:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-coding-standards.html
4047:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-Crystal.html
4048:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-Detector.html
4049:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-events.html
4050:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-filter.html
4051:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-geometry.html
4052:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-hdf5-file.html
4053:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-histogram.html
4054:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-Image.html
4055:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-indexing.html
4056:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-Integer-matrices.html
4057:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-integration.html
4058:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-peaks.html
4059:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-predict-refine.html
4060:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-Quaternion.html
4061:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-RefList-utilities.html
4062:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-RefList.html
4063:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-render.html
4064:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-Statistics.html
4065:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-stream.html
4066:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-Symmetry.html
4067:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-The-thread-pool.html
4068:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-Unit-cell-utilities.html
4069:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-UnitCell.html
4070:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL-Utilities.html
4071:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/CrystFEL.devhelp2
4072:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/home.png
4073:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/index.html
4074:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/index.sgml
4075:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/left-insensitive.png
4076:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/left.png
4077:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/right-insensitive.png
4078:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/right.png
4079:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/style.css
4080:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/up-insensitive.png
4081:info:activate x ./opt/local/share/doc/crystfel/reference/libcrystfel/CrystFEL/up.png
4082:info:activate x ./opt/local/share/crystfel/diffraction.cl
4083:info:activate x ./opt/local/share/crystfel/hdfsee.ui
4084:info:activate x ./opt/local/lib/libcrystfel.7.dylib
4085:info:activate x ./opt/local/lib/libcrystfel.a
4086:info:activate x ./opt/local/lib/libcrystfel.dylib
4087:info:activate x ./opt/local/lib/pkgconfig/
4088:info:activate x ./opt/local/lib/pkgconfig/crystfel.pc
4089:info:activate x ./opt/local/include/crystfel/
4090:info:activate x ./opt/local/include/crystfel/asdf.h
4091:info:activate x ./opt/local/include/crystfel/cell-utils.h
4092:info:activate x ./opt/local/include/crystfel/cell.h
4093:info:activate x ./opt/local/include/crystfel/crystal.h
4094:info:activate x ./opt/local/include/crystfel/detector.h
4095:info:activate x ./opt/local/include/crystfel/dirax.h
4096:info:activate x ./opt/local/include/crystfel/events.h
4097:info:activate x ./opt/local/include/crystfel/filters.h
4098:info:activate x ./opt/local/include/crystfel/geometry.h
4099:info:activate x ./opt/local/include/crystfel/hdf5-file.h
4100:info:activate x ./opt/local/include/crystfel/histogram.h
4101:info:activate x ./opt/local/include/crystfel/image.h
4102:info:activate x ./opt/local/include/crystfel/index.h
4103:info:activate x ./opt/local/include/crystfel/integer_matrix.h
4104:info:activate x ./opt/local/include/crystfel/integration.h
4105:info:activate x ./opt/local/include/crystfel/mosflm.h
4106:info:activate x ./opt/local/include/crystfel/peaks.h
4107:info:activate x ./opt/local/include/crystfel/predict-refine.h
4108:info:activate x ./opt/local/include/crystfel/reflist-utils.h
4109:info:activate x ./opt/local/include/crystfel/reflist.h
4110:info:activate x ./opt/local/include/crystfel/render.h
4111:info:activate x ./opt/local/include/crystfel/statistics.h
4112:info:activate x ./opt/local/include/crystfel/stream.h
4113:info:activate x ./opt/local/include/crystfel/symmetry.h
4114:info:activate x ./opt/local/include/crystfel/thread-pool.h
4115:info:activate x ./opt/local/include/crystfel/utils.h
4116:info:activate x ./opt/local/include/crystfel/version.h
4117:info:activate x ./opt/local/include/crystfel/xds.h
4118:info:activate x ./opt/local/bin/ambigator
4119:info:activate x ./opt/local/bin/cell_explorer
4120:info:activate x ./opt/local/bin/check_hkl
4121:info:activate x ./opt/local/bin/compare_hkl
4122:info:activate x ./opt/local/bin/geoptimiser
4123:info:activate x ./opt/local/bin/get_hkl
4124:info:activate x ./opt/local/bin/hdfsee
4125:info:activate x ./opt/local/bin/indexamajig
4126:info:activate x ./opt/local/bin/list_events
4127:info:activate x ./opt/local/bin/partial_sim
4128:info:activate x ./opt/local/bin/partialator
4129:info:activate x ./opt/local/bin/pattern_sim
4130:info:activate x ./opt/local/bin/process_hkl
4131:info:activate x ./opt/local/bin/render_hkl
4132:info:activate x ./opt/local/bin/whirligig
4133:debug:activate activating directory: /
4134:debug:activate activating directory: /opt
4135:debug:activate activating directory: /opt/local
4136:debug:activate activating directory: /opt/local/bin
4137:debug:activate activating file: /opt/local/bin/ambigator
4138:debug:activate activating file: /opt/local/bin/cell_explorer
4139:debug:activate activating file: /opt/local/bin/check_hkl
4140:debug:activate activating file: /opt/local/bin/compare_hkl
4141:debug:activate activating file: /opt/local/bin/geoptimiser
4142:debug:activate activating file: /opt/local/bin/get_hkl
4143:debug:activate activating file: /opt/local/bin/hdfsee
4144:debug:activate activating file: /opt/local/bin/indexamajig
4145:debug:activate activating file: /opt/local/bin/list_events
4146:debug:activate activating file: /opt/local/bin/partial_sim
4147:debug:activate activating file: /opt/local/bin/partialator
4148:debug:activate activating file: /opt/local/bin/pattern_sim
4149:debug:activate activating file: /opt/local/bin/process_hkl
4150:debug:activate activating file: /opt/local/bin/render_hkl
4151:debug:activate activating file: /opt/local/bin/whirligig
4152:debug:activate activating directory: /opt/local/include
4153:debug:activate activating directory: /opt/local/include/crystfel
4154:debug:activate activating file: /opt/local/include/crystfel/asdf.h
4155:debug:activate activating file: /opt/local/include/crystfel/cell-utils.h
4156:debug:activate activating file: /opt/local/include/crystfel/cell.h
4157:debug:activate activating file: /opt/local/include/crystfel/crystal.h
4158:debug:activate activating file: /opt/local/include/crystfel/detector.h
4159:debug:activate activating file: /opt/local/include/crystfel/dirax.h
4160:debug:activate activating file: /opt/local/include/crystfel/events.h
4161:debug:activate activating file: /opt/local/include/crystfel/filters.h
4162:debug:activate activating file: /opt/local/include/crystfel/geometry.h
4163:debug:activate activating file: /opt/local/include/crystfel/hdf5-file.h
4164:debug:activate activating file: /opt/local/include/crystfel/histogram.h
4165:debug:activate activating file: /opt/local/include/crystfel/image.h
4166:debug:activate activating file: /opt/local/include/crystfel/index.h
4167:debug:activate activating file: /opt/local/include/crystfel/integer_matrix.h
4168:debug:activate activating file: /opt/local/include/crystfel/integration.h
4169:debug:activate activating file: /opt/local/include/crystfel/mosflm.h
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