| 1 | Index: Portfile |
|---|
| 2 | =================================================================== |
|---|
| 3 | --- Portfile (revision 141727) |
|---|
| 4 | +++ Portfile (working copy) |
|---|
| 5 | @@ -4,17 +4,17 @@ |
|---|
| 6 | PortSystem 1.0 |
|---|
| 7 | PortGroup cmake 1.0 |
|---|
| 8 | PortGroup mpi 1.0 |
|---|
| 9 | +PortGroup github 1.0 |
|---|
| 10 | |
|---|
| 11 | compilers.choose cc cxx |
|---|
| 12 | |
|---|
| 13 | name apbs |
|---|
| 14 | subport apbs-mpi {} |
|---|
| 15 | -version 1.4.0 |
|---|
| 16 | # Set revision separately for each subport, below. |
|---|
| 17 | set branch [join [lrange [split ${version} .] 0 1] .] |
|---|
| 18 | categories science |
|---|
| 19 | license BSD |
|---|
| 20 | -maintainers gmail.com:howarth.at.macports |
|---|
| 21 | +maintainers gmail.com:howarth.at.macports openmaintainer |
|---|
| 22 | |
|---|
| 23 | description Adaptive Poisson-Boltzmann Solver |
|---|
| 24 | long_description APBS is a software package for the numerical \ |
|---|
| 25 | @@ -23,22 +23,36 @@ |
|---|
| 26 | electrostatic interactions between molecular \ |
|---|
| 27 | solutes over a wide range of length scales. |
|---|
| 28 | |
|---|
| 29 | -homepage http://www.poissonboltzmann.org |
|---|
| 30 | platforms darwin |
|---|
| 31 | -master_sites sourceforge:project/apbs/apbs/apbs-${version} |
|---|
| 32 | |
|---|
| 33 | -distname APBS-${branch}-source |
|---|
| 34 | -worksrcdir ${name} |
|---|
| 35 | +github.setup Electrostatics apbs-pdb2pqr d4e78c62e6a07f92c26924318d83a159fa6af063 |
|---|
| 36 | +version 1.4.1 |
|---|
| 37 | +homepage http://www.poissonboltzmann.org |
|---|
| 38 | |
|---|
| 39 | -checksums rmd160 9cf903fc904de18c1ceaa571f1c8bdd145731d78 \ |
|---|
| 40 | - sha256 00312320a042e283f106583a3f8b9093abbd193fe5e22ca5c615ab722ca586bd |
|---|
| 41 | +checksums rmd160 5c4d583e12deb3fbc2b5a8031882311cbfd22c7e \ |
|---|
| 42 | + sha256 f98ce6a51d8f813e1b4fa626c054ddbf7a985403ca30f890733cb1abf2bd6e05 |
|---|
| 43 | |
|---|
| 44 | depends_lib port:maloc \ |
|---|
| 45 | port:readline |
|---|
| 46 | |
|---|
| 47 | +# BEM needs 'gfortran', hard-coded, and configure fails without it if BEM is enabled, with a syntax error |
|---|
| 48 | +#CMake Error at CMakeLists.txt:217 (get_filename_component): |
|---|
| 49 | +# get_filename_component called with incorrect number of arguments |
|---|
| 50 | configure.args-append -DENABLE_OPENMP:BOOL=OFF \ |
|---|
| 51 | - -DCMAKE_C_FLAGS="-Ii${prefix}/include -O3 -ffast-math -g" |
|---|
| 52 | + -DENABLE_BEM=OFF |
|---|
| 53 | |
|---|
| 54 | +# make sure this comes after further options that the cmake portgroup adds, to specify directory correctly |
|---|
| 55 | +configure.post_args ./apbs |
|---|
| 56 | + |
|---|
| 57 | +test.run yes |
|---|
| 58 | +test { |
|---|
| 59 | + ln ${worksrcpath}/apbs/tools/manip/inputgen.py ${worksrcpath}/apbs/tests/ |
|---|
| 60 | + ln ${worksrcpath}/apbs/tools/manip/psize.py ${worksrcpath}/apbs/tests/ |
|---|
| 61 | + system -W ${worksrcpath}/apbs/tests "python apbs_tester.py" |
|---|
| 62 | + system -W ${worksrcpath}/apbs/tests "cat test.log" |
|---|
| 63 | + system -W ${worksrcpath}/apbs/tests "if grep FAILED test.log; then echo \"FAIL\"; exit 1; fi" |
|---|
| 64 | +} |
|---|
| 65 | + |
|---|
| 66 | set bins {analysis benchmark born coulomb del2dx dx2mol dx2uhbd dxmath |
|---|
| 67 | mergedx mergedx2 mgmesh multivalue similarity smooth tensor2dx |
|---|
| 68 | uhbd_asc2bin value} |
|---|
| 69 | @@ -47,7 +61,7 @@ |
|---|
| 70 | apbs { |
|---|
| 71 | compilers.setup |
|---|
| 72 | |
|---|
| 73 | - revision 1 |
|---|
| 74 | + revision 0 |
|---|
| 75 | |
|---|
| 76 | configure.args-append -DENABLE_MPI:BOOL=OFF |
|---|
| 77 | |
|---|
| 78 | @@ -99,3 +113,8 @@ |
|---|
| 79 | } |
|---|
| 80 | } |
|---|
| 81 | } |
|---|
| 82 | + |
|---|
| 83 | +# check for real releases, not github commits |
|---|
| 84 | +livecheck.type regex |
|---|
| 85 | +livecheck.url http://www.poissonboltzmann.org/news/ |
|---|
| 86 | +livecheck.regex APBS (\[0-9.\]+) |
|---|
