Ticket #49449: main.log

File main.log, 233.7 KB (added by kathryncole, 9 years ago)

main.log

Line 
1version:1
2:debug:main Found Dependency: path: /usr/bin filename: svn regex: ^svn$
3:debug:main epoch: in tree: 2 installed: 2
4:debug:main python27 2.7.10_3 exists in the ports tree
5:debug:main python27 2.7.10_3  is the latest installed
6:debug:main python27 2.7.10_3  is active
7:debug:main Merging existing variants '' into variants
8:debug:main new fully merged portvariants:
9:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/python27
10:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
11:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
12:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
13:debug:main universal variant already exists, so not adding the default one
14:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
15:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
16:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
17:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
18:debug:main No need to upgrade! python27 2.7.10_3 >= python27 2.7.10_3
19:debug:main epoch: in tree: 2 installed: 2
20:debug:main gettext 0.19.6_0 exists in the ports tree
21:debug:main gettext 0.19.6_0  is the latest installed
22:debug:main gettext 0.19.6_0  is active
23:debug:main Merging existing variants '' into variants
24:debug:main new fully merged portvariants:
25:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext
26:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
27:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
28:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
29:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
30:debug:main compiler clang 503.0.40 not blacklisted because it doesn't match {clang < 211.10.1}
31:debug:main universal variant already exists, so not adding the default one
32:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
33:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
34:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
35:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
36:debug:main No need to upgrade! gettext 0.19.6_0 >= gettext 0.19.6_0
37:debug:main epoch: in tree: 0 installed: 0
38:debug:main expat 2.1.0_0 exists in the ports tree
39:debug:main expat 2.1.0_0  is the latest installed
40:debug:main expat 2.1.0_0  is active
41:debug:main Merging existing variants '' into variants
42:debug:main new fully merged portvariants:
43:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat
44:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
45:debug:main adding the default universal variant
46:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
47:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
48:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
49:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
50:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
51:debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0
52:debug:main epoch: in tree: 0 installed: 0
53:debug:main libiconv 1.14_0 exists in the ports tree
54:debug:main libiconv 1.14_0  is the latest installed
55:debug:main libiconv 1.14_0  is active
56:debug:main Merging existing variants '' into variants
57:debug:main new fully merged portvariants:
58:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv
59:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
60:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
61:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
62:debug:main universal variant already exists, so not adding the default one
63:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
64:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
65:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
66:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
67:debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0
68:debug:main epoch: in tree: 0 installed: 0
69:debug:main ncurses 6.0_0 exists in the ports tree
70:debug:main ncurses 6.0_0  is the latest installed
71:debug:main ncurses 6.0_0  is active
72:debug:main Merging existing variants '' into variants
73:debug:main new fully merged portvariants:
74:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses
75:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
76:debug:main adding the default universal variant
77:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
78:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
79:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
80:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
81:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
82:debug:main No need to upgrade! ncurses 6.0_0 >= ncurses 6.0_0
83:debug:main epoch: in tree: 0 installed: 0
84:debug:main zlib 1.2.8_0 exists in the ports tree
85:debug:main zlib 1.2.8_0  is the latest installed
86:debug:main zlib 1.2.8_0  is active
87:debug:main Merging existing variants '' into variants
88:debug:main new fully merged portvariants:
89:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib
90:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
91:debug:main Sourcing PortGroup xcodeversion 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl
92:debug:main adding the default universal variant
93:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
94:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
95:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
96:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
97:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
98:debug:main No need to upgrade! zlib 1.2.8_0 >= zlib 1.2.8_0
99:debug:main epoch: in tree: 1 installed: 1
100:debug:main openssl 1.0.2d_0 exists in the ports tree
101:debug:main openssl 1.0.2d_0  is the latest installed
102:debug:main openssl 1.0.2d_0  is active
103:debug:main Merging existing variants '' into variants
104:debug:main new fully merged portvariants:
105:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/openssl
106:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
107:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
108:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
109:debug:main universal variant already exists, so not adding the default one
110:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
111:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
112:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
113:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
114:debug:main No need to upgrade! openssl 1.0.2d_0 >= openssl 1.0.2d_0
115:debug:main epoch: in tree: 0 installed: 0
116:debug:main sqlite3 3.8.11.1_0 exists in the ports tree
117:debug:main sqlite3 3.8.11.1_0  is the latest installed
118:debug:main sqlite3 3.8.11.1_0  is active
119:debug:main Merging existing variants '' into variants
120:debug:main new fully merged portvariants:
121:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/sqlite3
122:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
123:debug:main adding the default universal variant
124:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
125:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
126:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
127:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
128:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
129:debug:main No need to upgrade! sqlite3 3.8.11.1_0 >= sqlite3 3.8.11.1_0
130:debug:main epoch: in tree: 20090923 installed: 20090923
131:debug:main libedit 20150325-3.1_0 exists in the ports tree
132:debug:main libedit 20150325-3.1_0  is the latest installed
133:debug:main libedit 20150325-3.1_0  is active
134:debug:main Merging existing variants '' into variants
135:debug:main new fully merged portvariants:
136:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libedit
137:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
138:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
139:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
140:debug:main universal variant already exists, so not adding the default one
141:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
142:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
143:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
144:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
145:debug:main No need to upgrade! libedit 20150325-3.1_0 >= libedit 20150325-3.1_0
146:debug:main epoch: in tree: 0 installed: 0
147:debug:main db48 4.8.30_4 exists in the ports tree
148:debug:main db48 4.8.30_4  is the latest installed
149:debug:main db48 4.8.30_4  is active
150:debug:main Merging existing variants '' into variants
151:debug:main new fully merged portvariants:
152:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/db48
153:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
154:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
155:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
156:debug:main universal variant already exists, so not adding the default one
157:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
158:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
159:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
160:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
161:debug:main No need to upgrade! db48 4.8.30_4 >= db48 4.8.30_4
162:debug:main epoch: in tree: 0 installed: 0
163:debug:main bzip2 1.0.6_0 exists in the ports tree
164:debug:main bzip2 1.0.6_0  is the latest installed
165:debug:main bzip2 1.0.6_0  is active
166:debug:main Merging existing variants '' into variants
167:debug:main new fully merged portvariants:
168:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/bzip2
169:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
170:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
171:debug:main universal variant already exists, so not adding the default one
172:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
173:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
174:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
175:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
176:debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0
177:debug:main epoch: in tree: 0 installed: 0
178:debug:main python_select 0.3_6 exists in the ports tree
179:debug:main python_select 0.3_6  is the latest installed
180:debug:main python_select 0.3_6  is active
181:debug:main Merging existing variants '' into variants
182:debug:main new fully merged portvariants:
183:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/python_select
184:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
185:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
186:debug:main universal_variant is false, so not adding the default universal variant
187:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
188:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
189:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
190:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
191:debug:main No need to upgrade! python_select 0.3_6 >= python_select 0.3_6
192:debug:main epoch: in tree: 0 installed: 0
193:debug:main python2_select 0.0_1 exists in the ports tree
194:debug:main python2_select 0.0_1  is the latest installed
195:debug:main python2_select 0.0_1  is active
196:debug:main Merging existing variants '' into variants
197:debug:main new fully merged portvariants:
198:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/python2_select
199:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
200:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
201:debug:main universal_variant is false, so not adding the default universal variant
202:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
203:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
204:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
205:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
206:debug:main No need to upgrade! python2_select 0.0_1 >= python2_select 0.0_1
207:debug:main epoch: in tree: 0 installed: 0
208:debug:main freeglut 3.0.0_0 exists in the ports tree
209:debug:main freeglut 3.0.0_0  is the latest installed
210:debug:main freeglut 3.0.0_0  is active
211:debug:main Merging existing variants '' into variants
212:debug:main new fully merged portvariants:
213:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/freeglut
214:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
215:debug:main Re-registering default for configure.dir
216:debug:main Re-registering default for build.dir
217:debug:main Sourcing PortGroup cmake 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/cmake-1.0.tcl
218:debug:main adding the default universal variant
219:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
220:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
221:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
222:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
223:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
224:debug:main No need to upgrade! freeglut 3.0.0_0 >= freeglut 3.0.0_0
225:debug:main epoch: in tree: 1 installed: 1
226:debug:main mesa 11.0.2_0 exists in the ports tree
227:debug:main mesa 11.0.2_0 +osmesa+python27 is the latest installed
228:debug:main mesa 11.0.2_0 +osmesa+python27 is active
229:debug:main Merging existing variants '+osmesa+python27' into variants
230:debug:main new fully merged portvariants: osmesa + python27 +
231:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/mesa
232:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
233:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
234:debug:main compiler clang 503.0.40 not blacklisted because it doesn't match {clang < 100}
235:debug:main adding the default universal variant
236:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
237:debug:main Executing variant python27 provides python27
238:debug:main Executing variant osmesa provides osmesa
239:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
240:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
241:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
242:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
243:debug:main No need to upgrade! mesa 11.0.2_0 >= mesa 11.0.2_0
244:debug:main epoch: in tree: 0 installed: 0
245:debug:main xorg-glproto 1.4.17_0 exists in the ports tree
246:debug:main xorg-glproto 1.4.17_0  is the latest installed
247:debug:main xorg-glproto 1.4.17_0  is active
248:debug:main Merging existing variants '' into variants
249:debug:main new fully merged portvariants:
250:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-glproto
251:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
252:debug:main only one arch supported, so not adding the default universal variant
253:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
254:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
255:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
256:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
257:debug:main No need to upgrade! xorg-glproto 1.4.17_0 >= xorg-glproto 1.4.17_0
258:debug:main epoch: in tree: 0 installed: 0
259:debug:main xorg-dri2proto 2.8_0 exists in the ports tree
260:debug:main xorg-dri2proto 2.8_0  is the latest installed
261:debug:main xorg-dri2proto 2.8_0  is active
262:debug:main Merging existing variants '' into variants
263:debug:main new fully merged portvariants:
264:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-dri2proto
265:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
266:debug:main only one arch supported, so not adding the default universal variant
267:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
268:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
269:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
270:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
271:debug:main No need to upgrade! xorg-dri2proto 2.8_0 >= xorg-dri2proto 2.8_0
272:debug:main epoch: in tree: 0 installed: 0
273:debug:main xorg-libxcb 1.11.1_0 exists in the ports tree
274:debug:main xorg-libxcb 1.11.1_0 +python27 is the latest installed
275:debug:main xorg-libxcb 1.11.1_0 +python27 is active
276:debug:main Merging existing variants '+python27' into variants
277:debug:main new fully merged portvariants: python27 +
278:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libxcb
279:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
280:debug:main adding the default universal variant
281:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
282:debug:main Executing variant python27 provides python27
283:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
284:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
285:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
286:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
287:debug:main No need to upgrade! xorg-libxcb 1.11.1_0 >= xorg-libxcb 1.11.1_0
288:debug:main epoch: in tree: 0 installed: 0
289:debug:main xorg-libXau 1.0.8_0 exists in the ports tree
290:debug:main xorg-libXau 1.0.8_0  is the latest installed
291:debug:main xorg-libXau 1.0.8_0  is active
292:debug:main Merging existing variants '' into variants
293:debug:main new fully merged portvariants:
294:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXau
295:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
296:debug:main adding the default universal variant
297:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
298:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
299:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
300:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
301:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
302:debug:main No need to upgrade! xorg-libXau 1.0.8_0 >= xorg-libXau 1.0.8_0
303:debug:main epoch: in tree: 0 installed: 0
304:debug:main xorg-xproto 7.0.28_0 exists in the ports tree
305:debug:main xorg-xproto 7.0.28_0  is the latest installed
306:debug:main xorg-xproto 7.0.28_0  is active
307:debug:main Merging existing variants '' into variants
308:debug:main new fully merged portvariants:
309:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xproto
310:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
311:debug:main only one arch supported, so not adding the default universal variant
312:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
313:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
314:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
315:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
316:debug:main No need to upgrade! xorg-xproto 7.0.28_0 >= xorg-xproto 7.0.28_0
317:debug:main epoch: in tree: 0 installed: 0
318:debug:main xorg-libXdmcp 1.1.2_0 exists in the ports tree
319:debug:main xorg-libXdmcp 1.1.2_0  is the latest installed
320:debug:main xorg-libXdmcp 1.1.2_0  is active
321:debug:main Merging existing variants '' into variants
322:debug:main new fully merged portvariants:
323:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXdmcp
324:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
325:debug:main adding the default universal variant
326:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
327:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
328:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
329:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
330:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
331:debug:main No need to upgrade! xorg-libXdmcp 1.1.2_0 >= xorg-libXdmcp 1.1.2_0
332:debug:main epoch: in tree: 0 installed: 0
333:debug:main xorg-xcb-proto 1.11_1 exists in the ports tree
334:debug:main xorg-xcb-proto 1.11_1 +python27 is the latest installed
335:debug:main xorg-xcb-proto 1.11_1 +python27 is active
336:debug:main Merging existing variants '+python27' into variants
337:debug:main new fully merged portvariants: python27 +
338:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xcb-proto
339:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
340:debug:main only one arch supported, so not adding the default universal variant
341:debug:main Executing variant python27 provides python27
342:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
343:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
344:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
345:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
346:debug:main No need to upgrade! xorg-xcb-proto 1.11_1 >= xorg-xcb-proto 1.11_1
347:debug:main epoch: in tree: 0 installed: 0
348:debug:main libxml2 2.9.2_2 exists in the ports tree
349:debug:main libxml2 2.9.2_2  is the latest installed
350:debug:main libxml2 2.9.2_2  is active
351:debug:main Merging existing variants '' into variants
352:debug:main new fully merged portvariants:
353:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libxml2
354:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
355:debug:main adding the default universal variant
356:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
357:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
358:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
359:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
360:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
361:debug:main No need to upgrade! libxml2 2.9.2_2 >= libxml2 2.9.2_2
362:debug:main epoch: in tree: 0 installed: 0
363:debug:main xz 5.2.2_0 exists in the ports tree
364:debug:main xz 5.2.2_0  is the latest installed
365:debug:main xz 5.2.2_0  is active
366:debug:main Merging existing variants '' into variants
367:debug:main new fully merged portvariants:
368:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/xz
369:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
370:debug:main adding the default universal variant
371:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
372:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
373:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
374:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
375:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
376:debug:main No need to upgrade! xz 5.2.2_0 >= xz 5.2.2_0
377:debug:main epoch: in tree: 0 installed: 0
378:debug:main xorg-libpthread-stubs 0.3_0 exists in the ports tree
379:debug:main xorg-libpthread-stubs 0.3_0  is the latest installed
380:debug:main xorg-libpthread-stubs 0.3_0  is active
381:debug:main Merging existing variants '' into variants
382:debug:main new fully merged portvariants:
383:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libpthread-stubs
384:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
385:debug:main only one arch supported, so not adding the default universal variant
386:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
387:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
388:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
389:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
390:debug:main No need to upgrade! xorg-libpthread-stubs 0.3_0 >= xorg-libpthread-stubs 0.3_0
391:debug:main epoch: in tree: 0 installed: 0
392:debug:main xorg-libX11 1.6.3_0 exists in the ports tree
393:debug:main xorg-libX11 1.6.3_0  is the latest installed
394:debug:main xorg-libX11 1.6.3_0  is active
395:debug:main Merging existing variants '' into variants
396:debug:main new fully merged portvariants:
397:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libX11
398:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
399:debug:main adding the default universal variant
400:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
401:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
402:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
403:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
404:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
405:debug:main No need to upgrade! xorg-libX11 1.6.3_0 >= xorg-libX11 1.6.3_0
406:debug:main epoch: in tree: 0 installed: 0
407:debug:main xorg-kbproto 1.0.7_0 exists in the ports tree
408:debug:main xorg-kbproto 1.0.7_0  is the latest installed
409:debug:main xorg-kbproto 1.0.7_0  is active
410:debug:main Merging existing variants '' into variants
411:debug:main new fully merged portvariants:
412:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-kbproto
413:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
414:debug:main only one arch supported, so not adding the default universal variant
415:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
416:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
417:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
418:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
419:debug:main No need to upgrade! xorg-kbproto 1.0.7_0 >= xorg-kbproto 1.0.7_0
420:debug:main epoch: in tree: 0 installed: 0
421:debug:main xorg-libXext 1.3.3_0 exists in the ports tree
422:debug:main xorg-libXext 1.3.3_0  is the latest installed
423:debug:main xorg-libXext 1.3.3_0  is active
424:debug:main Merging existing variants '' into variants
425:debug:main new fully merged portvariants:
426:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXext
427:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
428:debug:main adding the default universal variant
429:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
430:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
431:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
432:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
433:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
434:debug:main No need to upgrade! xorg-libXext 1.3.3_0 >= xorg-libXext 1.3.3_0
435:debug:main epoch: in tree: 0 installed: 0
436:debug:main xorg-xextproto 7.3.0_0 exists in the ports tree
437:debug:main xorg-xextproto 7.3.0_0  is the latest installed
438:debug:main xorg-xextproto 7.3.0_0  is active
439:debug:main Merging existing variants '' into variants
440:debug:main new fully merged portvariants:
441:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xextproto
442:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
443:debug:main only one arch supported, so not adding the default universal variant
444:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
445:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
446:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
447:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
448:debug:main No need to upgrade! xorg-xextproto 7.3.0_0 >= xorg-xextproto 7.3.0_0
449:debug:main epoch: in tree: 0 installed: 0
450:debug:main xorg-libXdamage 1.1.4_0 exists in the ports tree
451:debug:main xorg-libXdamage 1.1.4_0  is the latest installed
452:debug:main xorg-libXdamage 1.1.4_0  is active
453:debug:main Merging existing variants '' into variants
454:debug:main new fully merged portvariants:
455:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXdamage
456:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
457:debug:main adding the default universal variant
458:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
459:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
460:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
461:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
462:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
463:debug:main No need to upgrade! xorg-libXdamage 1.1.4_0 >= xorg-libXdamage 1.1.4_0
464:debug:main epoch: in tree: 0 installed: 0
465:debug:main xorg-libXfixes 5.0.1_0 exists in the ports tree
466:debug:main xorg-libXfixes 5.0.1_0  is the latest installed
467:debug:main xorg-libXfixes 5.0.1_0  is active
468:debug:main Merging existing variants '' into variants
469:debug:main new fully merged portvariants:
470:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXfixes
471:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
472:debug:main adding the default universal variant
473:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
474:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
475:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
476:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
477:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
478:debug:main No need to upgrade! xorg-libXfixes 5.0.1_0 >= xorg-libXfixes 5.0.1_0
479:debug:main epoch: in tree: 0 installed: 0
480:debug:main xorg-fixesproto 5.0_0 exists in the ports tree
481:debug:main xorg-fixesproto 5.0_0  is the latest installed
482:debug:main xorg-fixesproto 5.0_0  is active
483:debug:main Merging existing variants '' into variants
484:debug:main new fully merged portvariants:
485:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-fixesproto
486:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
487:debug:main only one arch supported, so not adding the default universal variant
488:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
489:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
490:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
491:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
492:debug:main No need to upgrade! xorg-fixesproto 5.0_0 >= xorg-fixesproto 5.0_0
493:debug:main epoch: in tree: 0 installed: 0
494:debug:main xorg-damageproto 1.2.1_0 exists in the ports tree
495:debug:main xorg-damageproto 1.2.1_0  is the latest installed
496:debug:main xorg-damageproto 1.2.1_0  is active
497:debug:main Merging existing variants '' into variants
498:debug:main new fully merged portvariants:
499:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-damageproto
500:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
501:debug:main only one arch supported, so not adding the default universal variant
502:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
503:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
504:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
505:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
506:debug:main No need to upgrade! xorg-damageproto 1.2.1_0 >= xorg-damageproto 1.2.1_0
507:debug:main epoch: in tree: 0 installed: 0
508:debug:main xorg-libXi 1.7.5_0 exists in the ports tree
509:debug:main xorg-libXi 1.7.5_0  is the latest installed
510:debug:main xorg-libXi 1.7.5_0  is active
511:debug:main Merging existing variants '' into variants
512:debug:main new fully merged portvariants:
513:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXi
514:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
515:debug:main adding the default universal variant
516:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
517:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
518:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
519:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
520:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
521:debug:main No need to upgrade! xorg-libXi 1.7.5_0 >= xorg-libXi 1.7.5_0
522:debug:main epoch: in tree: 0 installed: 0
523:debug:main xorg-inputproto 2.3.1_0 exists in the ports tree
524:debug:main xorg-inputproto 2.3.1_0  is the latest installed
525:debug:main xorg-inputproto 2.3.1_0  is active
526:debug:main Merging existing variants '' into variants
527:debug:main new fully merged portvariants:
528:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-inputproto
529:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
530:debug:main only one arch supported, so not adding the default universal variant
531:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
532:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
533:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
534:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
535:debug:main No need to upgrade! xorg-inputproto 2.3.1_0 >= xorg-inputproto 2.3.1_0
536:debug:main epoch: in tree: 0 installed: 0
537:debug:main xorg-libXmu 1.1.2_0 exists in the ports tree
538:debug:main xorg-libXmu 1.1.2_0  is the latest installed
539:debug:main xorg-libXmu 1.1.2_0  is active
540:debug:main Merging existing variants '' into variants
541:debug:main new fully merged portvariants:
542:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXmu
543:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
544:debug:main adding the default universal variant
545:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
546:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
547:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
548:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
549:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
550:debug:main No need to upgrade! xorg-libXmu 1.1.2_0 >= xorg-libXmu 1.1.2_0
551:debug:main epoch: in tree: 0 installed: 0
552:debug:main xorg-libXt 1.1.5_0 exists in the ports tree
553:debug:main xorg-libXt 1.1.5_0  is the latest installed
554:debug:main xorg-libXt 1.1.5_0  is active
555:debug:main Merging existing variants '' into variants
556:debug:main new fully merged portvariants:
557:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXt
558:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
559:debug:main adding the default universal variant
560:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
561:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
562:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
563:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
564:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
565:debug:main No need to upgrade! xorg-libXt 1.1.5_0 >= xorg-libXt 1.1.5_0
566:debug:main epoch: in tree: 0 installed: 0
567:debug:main xorg-libsm 1.2.1_0 exists in the ports tree
568:debug:main xorg-libsm 1.2.1_0  is the latest installed
569:debug:main xorg-libsm 1.2.1_0  is active
570:debug:main Merging existing variants '' into variants
571:debug:main new fully merged portvariants:
572:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libsm
573:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
574:debug:main adding the default universal variant
575:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
576:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
577:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
578:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
579:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
580:debug:main No need to upgrade! xorg-libsm 1.2.1_0 >= xorg-libsm 1.2.1_0
581:debug:main epoch: in tree: 0 installed: 0
582:debug:main xorg-libice 1.0.9_0 exists in the ports tree
583:debug:main xorg-libice 1.0.9_0  is the latest installed
584:debug:main xorg-libice 1.0.9_0  is active
585:debug:main Merging existing variants '' into variants
586:debug:main new fully merged portvariants:
587:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libice
588:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
589:debug:main adding the default universal variant
590:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
591:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
592:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
593:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
594:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
595:debug:main No need to upgrade! xorg-libice 1.0.9_0 >= xorg-libice 1.0.9_0
596:debug:main epoch: in tree: 0 installed: 0
597:debug:main libGLU 9.0.0_0 exists in the ports tree
598:debug:main libGLU 9.0.0_0  is the latest installed
599:debug:main libGLU 9.0.0_0  is active
600:debug:main Merging existing variants '' into variants
601:debug:main new fully merged portvariants:
602:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/libGLU
603:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
604:debug:main adding the default universal variant
605:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
606:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
607:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
608:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
609:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
610:debug:main No need to upgrade! libGLU 9.0.0_0 >= libGLU 9.0.0_0
611:debug:main epoch: in tree: 0 installed: 0
612:debug:main xorg-libXrandr 1.5.0_0 exists in the ports tree
613:debug:main xorg-libXrandr 1.5.0_0  is the latest installed
614:debug:main xorg-libXrandr 1.5.0_0  is active
615:debug:main Merging existing variants '' into variants
616:debug:main new fully merged portvariants:
617:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXrandr
618:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
619:debug:main adding the default universal variant
620:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
621:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
622:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
623:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
624:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
625:debug:main No need to upgrade! xorg-libXrandr 1.5.0_0 >= xorg-libXrandr 1.5.0_0
626:debug:main epoch: in tree: 0 installed: 0
627:debug:main xrender 0.9.9_0 exists in the ports tree
628:debug:main xrender 0.9.9_0  is the latest installed
629:debug:main xrender 0.9.9_0  is active
630:debug:main Merging existing variants '' into variants
631:debug:main new fully merged portvariants:
632:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xrender
633:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
634:debug:main adding the default universal variant
635:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
636:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
637:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
638:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
639:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
640:debug:main No need to upgrade! xrender 0.9.9_0 >= xrender 0.9.9_0
641:debug:main epoch: in tree: 0 installed: 0
642:debug:main xorg-renderproto 0.11.1_0 exists in the ports tree
643:debug:main xorg-renderproto 0.11.1_0  is the latest installed
644:debug:main xorg-renderproto 0.11.1_0  is active
645:debug:main Merging existing variants '' into variants
646:debug:main new fully merged portvariants:
647:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-renderproto
648:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
649:debug:main only one arch supported, so not adding the default universal variant
650:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
651:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
652:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
653:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
654:debug:main No need to upgrade! xorg-renderproto 0.11.1_0 >= xorg-renderproto 0.11.1_0
655:debug:main epoch: in tree: 0 installed: 0
656:debug:main xorg-randrproto 1.5.0_0 exists in the ports tree
657:debug:main xorg-randrproto 1.5.0_0  is the latest installed
658:debug:main xorg-randrproto 1.5.0_0  is active
659:debug:main Merging existing variants '' into variants
660:debug:main new fully merged portvariants:
661:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-randrproto
662:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
663:debug:main only one arch supported, so not adding the default universal variant
664:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
665:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
666:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
667:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
668:debug:main No need to upgrade! xorg-randrproto 1.5.0_0 >= xorg-randrproto 1.5.0_0
669:debug:main epoch: in tree: 0 installed: 0
670:debug:main xorg-libXxf86vm 1.1.4_0 exists in the ports tree
671:debug:main xorg-libXxf86vm 1.1.4_0  is the latest installed
672:debug:main xorg-libXxf86vm 1.1.4_0  is active
673:debug:main Merging existing variants '' into variants
674:debug:main new fully merged portvariants:
675:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXxf86vm
676:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
677:debug:main adding the default universal variant
678:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
679:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
680:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
681:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
682:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
683:debug:main No need to upgrade! xorg-libXxf86vm 1.1.4_0 >= xorg-libXxf86vm 1.1.4_0
684:debug:main epoch: in tree: 0 installed: 0
685:debug:main xorg-xf86vidmodeproto 2.3.1_0 exists in the ports tree
686:debug:main xorg-xf86vidmodeproto 2.3.1_0  is the latest installed
687:debug:main xorg-xf86vidmodeproto 2.3.1_0  is active
688:debug:main Merging existing variants '' into variants
689:debug:main new fully merged portvariants:
690:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xf86vidmodeproto
691:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
692:debug:main only one arch supported, so not adding the default universal variant
693:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
694:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
695:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
696:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
697:debug:main No need to upgrade! xorg-xf86vidmodeproto 2.3.1_0 >= xorg-xf86vidmodeproto 2.3.1_0
698:debug:main epoch: in tree: 0 installed: 0
699:debug:main freetype 2.6.1_0 exists in the ports tree
700:debug:main freetype 2.6.1_0  is the latest installed
701:debug:main freetype 2.6.1_0  is active
702:debug:main Merging existing variants '' into variants
703:debug:main new fully merged portvariants:
704:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/print/freetype
705:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
706:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
707:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
708:debug:main universal variant already exists, so not adding the default one
709:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
710:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
711:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
712:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
713:debug:main No need to upgrade! freetype 2.6.1_0 >= freetype 2.6.1_0
714:debug:main epoch: in tree: 0 installed: 0
715:debug:main libpng 1.6.18_0 exists in the ports tree
716:debug:main libpng 1.6.18_0  is the latest installed
717:debug:main libpng 1.6.18_0  is active
718:debug:main Merging existing variants '' into variants
719:debug:main new fully merged portvariants:
720:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/graphics/libpng
721:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
722:debug:main adding the default universal variant
723:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
724:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
725:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
726:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
727:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
728:debug:main No need to upgrade! libpng 1.6.18_0 >= libpng 1.6.18_0
729:debug:main epoch: in tree: 0 installed: 0
730:debug:main glew 1.13.0_0 exists in the ports tree
731:debug:main glew 1.13.0_0  is the latest installed
732:debug:main glew 1.13.0_0  is active
733:debug:main Merging existing variants '' into variants
734:debug:main new fully merged portvariants:
735:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/graphics/glew
736:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
737:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
738:debug:main universal variant already exists, so not adding the default one
739:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
740:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
741:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
742:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
743:debug:main No need to upgrade! glew 1.13.0_0 >= glew 1.13.0_0
744:debug:main epoch: in tree: 0 installed: 0
745:debug:main py27-numpy 1.10.1_0 exists in the ports tree
746:debug:main py27-numpy 1.10.1_0 +gfortran is the latest installed
747:debug:main py27-numpy 1.10.1_0 +gfortran is active
748:debug:main Merging existing variants '+gfortran' into variants
749:debug:main new fully merged portvariants: gfortran +
750:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-numpy
751:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
752:debug:main Re-registering default for build.cmd
753:debug:main Re-registering default for destroot.cmd
754:debug:main Re-registering default for destroot.destdir
755:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
756:debug:main Sourcing PortGroup github 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/github-1.0.tcl
757:debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
758:debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
759:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
760:debug:main universal_variant is false, so not adding the default universal variant
761:debug:main Executing variant gfortran provides gfortran
762:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
763:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
764:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
765:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
766:debug:main No need to upgrade! py27-numpy 1.10.1_0 >= py27-numpy 1.10.1_0
767:debug:main epoch: in tree: 0 installed: 0
768:debug:main fftw-3 3.3.4_1 exists in the ports tree
769:debug:main fftw-3 3.3.4_1  is the latest installed
770:debug:main fftw-3 3.3.4_1  is active
771:debug:main Merging existing variants '' into variants
772:debug:main new fully merged portvariants:
773:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/fftw-3
774:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
775:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
776:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
777:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
778:debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
779:debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
780:debug:main Sourcing PortGroup mpi 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl
781:debug:main compiler clang 503.0.40 not blacklisted because it doesn't match {clang <= 211.10.1}
782:debug:main universal variant already exists, so not adding the default one
783:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
784:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
785:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
786:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
787:debug:main No need to upgrade! fftw-3 3.3.4_1 >= fftw-3 3.3.4_1
788:debug:main epoch: in tree: 0 installed: 0
789:debug:main py27-nose 1.3.1_1 exists in the ports tree
790:debug:main py27-nose 1.3.1_1  is the latest installed
791:debug:main py27-nose 1.3.1_1  is active
792:debug:main Merging existing variants '' into variants
793:debug:main new fully merged portvariants:
794:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-nose
795:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
796:debug:main Re-registering default for build.cmd
797:debug:main Re-registering default for destroot.cmd
798:debug:main Re-registering default for destroot.destdir
799:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
800:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
801:debug:main only one arch supported, so not adding the default universal variant
802:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
803:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
804:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
805:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
806:debug:main No need to upgrade! py27-nose 1.3.1_1 >= py27-nose 1.3.1_1
807:debug:main epoch: in tree: 0 installed: 0
808:debug:main py27-setuptools 18.3.2_0 exists in the ports tree
809:debug:main py27-setuptools 18.3.2_0  is the latest installed
810:debug:main py27-setuptools 18.3.2_0  is active
811:debug:main Merging existing variants '' into variants
812:debug:main new fully merged portvariants:
813:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-setuptools
814:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
815:debug:main Re-registering default for build.cmd
816:debug:main Re-registering default for destroot.cmd
817:debug:main Re-registering default for destroot.destdir
818:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
819:debug:main only one arch supported, so not adding the default universal variant
820:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
821:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
822:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
823:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
824:debug:main No need to upgrade! py27-setuptools 18.3.2_0 >= py27-setuptools 18.3.2_0
825:debug:main epoch: in tree: 0 installed: 0
826:debug:main nosetests_select 0.1_0 exists in the ports tree
827:debug:main nosetests_select 0.1_0  is the latest installed
828:debug:main nosetests_select 0.1_0  is active
829:debug:main Merging existing variants '' into variants
830:debug:main new fully merged portvariants:
831:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/nosetests_select
832:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
833:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
834:debug:main universal_variant is false, so not adding the default universal variant
835:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
836:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
837:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
838:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
839:debug:main No need to upgrade! nosetests_select 0.1_0 >= nosetests_select 0.1_0
840:debug:main epoch: in tree: 0 installed: 0
841:debug:main py27-cython 0.23.4_0 exists in the ports tree
842:debug:main py27-cython 0.23.4_0  is the latest installed
843:debug:main py27-cython 0.23.4_0  is active
844:debug:main Merging existing variants '' into variants
845:debug:main new fully merged portvariants:
846:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-cython
847:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
848:debug:main Re-registering default for build.cmd
849:debug:main Re-registering default for destroot.cmd
850:debug:main Re-registering default for destroot.destdir
851:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
852:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
853:debug:main adding the default universal variant
854:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
855:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
856:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
857:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
858:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
859:debug:main No need to upgrade! py27-cython 0.23.4_0 >= py27-cython 0.23.4_0
860:debug:main epoch: in tree: 0 installed: 0
861:debug:main cython_select 0.1_0 exists in the ports tree
862:debug:main cython_select 0.1_0  is the latest installed
863:debug:main cython_select 0.1_0  is active
864:debug:main Merging existing variants '' into variants
865:debug:main new fully merged portvariants:
866:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/cython_select
867:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
868:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
869:debug:main universal_variant is false, so not adding the default universal variant
870:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
871:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
872:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
873:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
874:debug:main No need to upgrade! cython_select 0.1_0 >= cython_select 0.1_0
875:debug:main epoch: in tree: 2 installed: 2
876:debug:main libgcc 5.2.0_0 exists in the ports tree
877:debug:main libgcc 5.2.0_0  is the latest installed
878:debug:main libgcc 5.2.0_0  is active
879:debug:main Merging existing variants '' into variants
880:debug:main new fully merged portvariants:
881:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/gcc5
882:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
883:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
884:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
885:debug:main compiler llvm-gcc-4.2 blacklisted because it's not installed or it doesn't work
886:debug:main compiler clang 503.0.40 not blacklisted because it doesn't match {clang < 300}
887:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
888:debug:main universal variant already exists, so not adding the default one
889:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
890:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
891:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
892:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
893:debug:main No need to upgrade! libgcc 5.2.0_0 >= libgcc 5.2.0_0
894:debug:main epoch: in tree: 0 installed: 0
895:debug:main cctools 870_0 exists in the ports tree
896:debug:main cctools 870_0 +llvm34 is the latest installed
897:debug:main cctools 870_0 +llvm34 is active
898:debug:main Merging existing variants '+llvm34' into variants
899:debug:main new fully merged portvariants: llvm34 +
900:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cctools
901:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
902:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
903:debug:main universal variant already exists, so not adding the default one
904:debug:main Executing variant llvm34 provides llvm34
905:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
906:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
907:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
908:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
909:debug:main No need to upgrade! cctools 870_0 >= cctools 870_0
910:debug:main epoch: in tree: 1 installed: 1
911:debug:main llvm-3.4 3.4.2_8 exists in the ports tree
912:debug:main llvm-3.4 3.4.2_8  is the latest installed
913:debug:main llvm-3.4 3.4.2_8  is active
914:debug:main Merging existing variants '' into variants
915:debug:main new fully merged portvariants:
916:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/llvm-3.4
917:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
918:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
919:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
920:debug:main compiler gcc-4.2 blacklisted because it's not installed or it doesn't work
921:debug:main compiler clang 503.0.40 not blacklisted because it doesn't match {clang < 421}
922:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
923:debug:main universal variant already exists, so not adding the default one
924:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
925:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
926:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
927:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
928:debug:main No need to upgrade! llvm-3.4 3.4.2_8 >= llvm-3.4 3.4.2_8
929:debug:main epoch: in tree: 0 installed: 0
930:debug:main libffi 3.2.1_0 exists in the ports tree
931:debug:main libffi 3.2.1_0  is the latest installed
932:debug:main libffi 3.2.1_0  is active
933:debug:main Merging existing variants '' into variants
934:debug:main new fully merged portvariants:
935:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libffi
936:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
937:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
938:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
939:debug:main universal variant already exists, so not adding the default one
940:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
941:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
942:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
943:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
944:debug:main No need to upgrade! libffi 3.2.1_0 >= libffi 3.2.1_0
945:debug:main Found Dependency: path: /usr/bin filename: perl regex: ^perl$
946:debug:main perl5 is *not* installed by MacPorts
947:debug:main Searching for dependency: perl5
948:debug:main Didn't find receipt, going to depspec regex for: perl5
949:debug:main Found Dependency: path: /usr/bin filename: perl regex: ^perl$
950:debug:main perl5 not installed, soft dependency satisfied
951:debug:main epoch: in tree: 0 installed: 0
952:debug:main llvm_select 1.0_0 exists in the ports tree
953:debug:main llvm_select 1.0_0  is the latest installed
954:debug:main llvm_select 1.0_0  is active
955:debug:main Merging existing variants '' into variants
956:debug:main new fully merged portvariants:
957:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/llvm_select
958:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
959:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
960:debug:main universal_variant is false, so not adding the default universal variant
961:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
962:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
963:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
964:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
965:debug:main No need to upgrade! llvm_select 1.0_0 >= llvm_select 1.0_0
966:debug:main epoch: in tree: 0 installed: 0
967:debug:main gmp 6.0.0_1 exists in the ports tree
968:debug:main gmp 6.0.0_1  is the latest installed
969:debug:main gmp 6.0.0_1  is active
970:debug:main Merging existing variants '' into variants
971:debug:main new fully merged portvariants:
972:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gmp
973:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
974:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
975:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
976:debug:main universal variant already exists, so not adding the default one
977:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
978:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
979:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
980:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
981:debug:main No need to upgrade! gmp 6.0.0_1 >= gmp 6.0.0_1
982:debug:main epoch: in tree: 2 installed: 2
983:debug:main isl 0.14.1_0 exists in the ports tree
984:debug:main isl 0.14.1_0  is the latest installed
985:debug:main isl 0.14.1_0  is active
986:debug:main Merging existing variants '' into variants
987:debug:main new fully merged portvariants:
988:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/isl
989:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
990:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
991:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
992:debug:main universal variant already exists, so not adding the default one
993:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
994:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
995:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
996:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
997:debug:main No need to upgrade! isl 0.14.1_0 >= isl 0.14.1_0
998:debug:main epoch: in tree: 2 installed: 2
999:debug:main ld64 2_0 exists in the ports tree
1000:debug:main ld64 2_0  is the latest installed
1001:debug:main ld64 2_0  is active
1002:debug:main Merging existing variants '' into variants
1003:debug:main new fully merged portvariants:
1004:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ld64
1005:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1006:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
1007:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1008:debug:main universal variant already exists, so not adding the default one
1009:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1010:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1011:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1012:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1013:debug:main No need to upgrade! ld64 2_0 >= ld64 2_0
1014:debug:main epoch: in tree: 2 installed: 2
1015:debug:main ld64-latest 242.2_0 exists in the ports tree
1016:debug:main ld64-latest 242.2_0 +llvm34 is the latest installed
1017:debug:main ld64-latest 242.2_0 +llvm34 is active
1018:debug:main Merging existing variants '+llvm34' into variants
1019:debug:main new fully merged portvariants: llvm34 +
1020:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ld64
1021:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1022:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
1023:debug:main compiler clang 503.0.40 not blacklisted because it doesn't match {clang < 100}
1024:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1025:debug:main universal variant already exists, so not adding the default one
1026:debug:main Executing variant llvm34 provides llvm34
1027:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1028:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1029:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1030:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1031:debug:main No need to upgrade! ld64-latest 242.2_0 >= ld64-latest 242.2_0
1032:debug:main epoch: in tree: 1 installed: 1
1033:debug:main libcxx 3.6.0_0 exists in the ports tree
1034:debug:main libcxx 3.6.0_0  is the latest installed
1035:debug:main libcxx 3.6.0_0  is active
1036:debug:main Merging existing variants '' into variants
1037:debug:main new fully merged portvariants:
1038:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/libcxx
1039:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1040:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
1041:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1042:debug:main universal variant already exists, so not adding the default one
1043:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1044:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1045:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1046:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1047:debug:main No need to upgrade! libcxx 3.6.0_0 >= libcxx 3.6.0_0
1048:debug:main epoch: in tree: 0 installed: 0
1049:debug:main libmpc 1.0.3_0 exists in the ports tree
1050:debug:main libmpc 1.0.3_0  is the latest installed
1051:debug:main libmpc 1.0.3_0  is active
1052:debug:main Merging existing variants '' into variants
1053:debug:main new fully merged portvariants:
1054:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libmpc
1055:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1056:debug:main adding the default universal variant
1057:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1058:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1059:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1060:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1061:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1062:debug:main No need to upgrade! libmpc 1.0.3_0 >= libmpc 1.0.3_0
1063:debug:main epoch: in tree: 0 installed: 0
1064:debug:main mpfr 3.1.3_0 exists in the ports tree
1065:debug:main mpfr 3.1.3_0  is the latest installed
1066:debug:main mpfr 3.1.3_0  is active
1067:debug:main Merging existing variants '' into variants
1068:debug:main new fully merged portvariants:
1069:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/mpfr
1070:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1071:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1072:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
1073:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
1074:debug:main compiler clang 503.0.40 not blacklisted because it doesn't match {clang == 211.10.1}
1075:debug:main universal variant already exists, so not adding the default one
1076:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1077:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1078:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1079:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1080:debug:main No need to upgrade! mpfr 3.1.3_0 >= mpfr 3.1.3_0
1081:debug:main epoch: in tree: 0 installed: 0
1082:debug:main py27-pmw 1.3.3a_0 exists in the ports tree
1083:debug:main py27-pmw 1.3.3a_0  is the latest installed
1084:debug:main py27-pmw 1.3.3a_0  is active
1085:debug:main Merging existing variants '' into variants
1086:debug:main new fully merged portvariants:
1087:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-pmw
1088:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1089:debug:main Re-registering default for build.cmd
1090:debug:main Re-registering default for destroot.cmd
1091:debug:main Re-registering default for destroot.destdir
1092:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
1093:debug:main only one arch supported, so not adding the default universal variant
1094:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1095:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1096:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1097:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1098:debug:main No need to upgrade! py27-pmw 1.3.3a_0 >= py27-pmw 1.3.3a_0
1099:debug:main epoch: in tree: 0 installed: 0
1100:debug:main py27-tkinter 2.7.10_0 exists in the ports tree
1101:debug:main py27-tkinter 2.7.10_0  is the latest installed
1102:debug:main py27-tkinter 2.7.10_0  is active
1103:debug:main Merging existing variants '' into variants
1104:debug:main new fully merged portvariants:
1105:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-tkinter
1106:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1107:debug:main Re-registering default for build.cmd
1108:debug:main Re-registering default for destroot.cmd
1109:debug:main Re-registering default for destroot.destdir
1110:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
1111:debug:main adding the default universal variant
1112:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1113:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1114:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1115:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1116:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1117:debug:main No need to upgrade! py27-tkinter 2.7.10_0 >= py27-tkinter 2.7.10_0
1118:debug:main epoch: in tree: 0 installed: 0
1119:debug:main tk 8.6.3_0 exists in the ports tree
1120:debug:main tk 8.6.3_0 +quartz is the latest installed
1121:debug:main tk 8.6.3_0 +quartz is active
1122:debug:main Merging existing variants '+quartz' into variants
1123:debug:main new fully merged portvariants: quartz +
1124:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/tk
1125:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1126:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1127:debug:main adding the default universal variant
1128:debug:main Executing variant quartz provides quartz
1129:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1130:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1131:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1132:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1133:debug:main No need to upgrade! tk 8.6.3_0 >= tk 8.6.3_0
1134:debug:main epoch: in tree: 0 installed: 0
1135:debug:main tcl 8.6.3_0 exists in the ports tree
1136:debug:main tcl 8.6.3_0 +corefoundation+threads is the latest installed
1137:debug:main tcl 8.6.3_0 +corefoundation+threads is active
1138:debug:main Merging existing variants '+corefoundation+threads' into variants
1139:debug:main new fully merged portvariants: corefoundation + threads +
1140:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/tcl
1141:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1142:debug:main adding the default universal variant
1143:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1144:debug:main Executing variant threads provides threads
1145:debug:main Executing variant corefoundation provides corefoundation
1146:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1147:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1148:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1149:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1150:debug:main No need to upgrade! tcl 8.6.3_0 >= tcl 8.6.3_0
1151:debug:main epoch: in tree: 0 installed: 0
1152:debug:main py27-scipy 0.16.0_1 exists in the ports tree
1153:debug:main py27-scipy 0.16.0_1 +gcc48 is the latest installed
1154:debug:main py27-scipy 0.16.0_1 +gcc48 is active
1155:debug:main Merging existing variants '+gcc48' into variants
1156:debug:main new fully merged portvariants: gcc48 +
1157:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-scipy
1158:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1159:debug:main Re-registering default for build.cmd
1160:debug:main Re-registering default for destroot.cmd
1161:debug:main Re-registering default for destroot.destdir
1162:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
1163:debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
1164:debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
1165:debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
1166:debug:main universal_variant is false, so not adding the default universal variant
1167:debug:main Executing variant gcc48 provides gcc48
1168:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1169:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1170:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1171:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1172:debug:main No need to upgrade! py27-scipy 0.16.0_1 >= py27-scipy 0.16.0_1
1173:debug:main epoch: in tree: 0 installed: 0
1174:debug:main swig-python 3.0.7_0 exists in the ports tree
1175:debug:main swig-python 3.0.7_0  is the latest installed
1176:debug:main swig-python 3.0.7_0  is active
1177:debug:main Merging existing variants '' into variants
1178:debug:main new fully merged portvariants:
1179:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/swig
1180:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1181:debug:main adding the default universal variant
1182:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1183:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1184:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1185:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1186:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1187:debug:main No need to upgrade! swig-python 3.0.7_0 >= swig-python 3.0.7_0
1188:debug:main epoch: in tree: 0 installed: 0
1189:debug:main swig 3.0.7_0 exists in the ports tree
1190:debug:main swig 3.0.7_0  is the latest installed
1191:debug:main swig 3.0.7_0  is active
1192:debug:main Merging existing variants '' into variants
1193:debug:main new fully merged portvariants:
1194:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/swig
1195:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1196:debug:main adding the default universal variant
1197:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1198:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1199:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1200:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1201:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1202:debug:main No need to upgrade! swig 3.0.7_0 >= swig 3.0.7_0
1203:debug:main epoch: in tree: 0 installed: 0
1204:debug:main pcre 8.37_0 exists in the ports tree
1205:debug:main pcre 8.37_0  is the latest installed
1206:debug:main pcre 8.37_0  is active
1207:debug:main Merging existing variants '' into variants
1208:debug:main new fully merged portvariants:
1209:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/pcre
1210:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1211:debug:main adding the default universal variant
1212:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1213:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1214:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1215:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1216:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1217:debug:main No need to upgrade! pcre 8.37_0 >= pcre 8.37_0
1218:debug:main epoch: in tree: 0 installed: 0
1219:debug:main xdpyinfo 1.3.2_0 exists in the ports tree
1220:debug:main xdpyinfo 1.3.2_0  is the latest installed
1221:debug:main xdpyinfo 1.3.2_0  is active
1222:debug:main Merging existing variants '' into variants
1223:debug:main new fully merged portvariants:
1224:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xdpyinfo
1225:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1226:debug:main adding the default universal variant
1227:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1228:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1229:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1230:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1231:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1232:debug:main No need to upgrade! xdpyinfo 1.3.2_0 >= xdpyinfo 1.3.2_0
1233:debug:main epoch: in tree: 0 installed: 0
1234:debug:main xorg-libXinerama 1.1.3_0 exists in the ports tree
1235:debug:main xorg-libXinerama 1.1.3_0  is the latest installed
1236:debug:main xorg-libXinerama 1.1.3_0  is active
1237:debug:main Merging existing variants '' into variants
1238:debug:main new fully merged portvariants:
1239:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXinerama
1240:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1241:debug:main adding the default universal variant
1242:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1243:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1244:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1245:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1246:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1247:debug:main No need to upgrade! xorg-libXinerama 1.1.3_0 >= xorg-libXinerama 1.1.3_0
1248:debug:main epoch: in tree: 0 installed: 0
1249:debug:main xorg-xineramaproto 1.2.1_0 exists in the ports tree
1250:debug:main xorg-xineramaproto 1.2.1_0  is the latest installed
1251:debug:main xorg-xineramaproto 1.2.1_0  is active
1252:debug:main Merging existing variants '' into variants
1253:debug:main new fully merged portvariants:
1254:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xineramaproto
1255:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1256:debug:main only one arch supported, so not adding the default universal variant
1257:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1258:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1259:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1260:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1261:debug:main No need to upgrade! xorg-xineramaproto 1.2.1_0 >= xorg-xineramaproto 1.2.1_0
1262:debug:main epoch: in tree: 0 installed: 0
1263:debug:main xorg-libXtst 1.2.2_0 exists in the ports tree
1264:debug:main xorg-libXtst 1.2.2_0  is the latest installed
1265:debug:main xorg-libXtst 1.2.2_0  is active
1266:debug:main Merging existing variants '' into variants
1267:debug:main new fully merged portvariants:
1268:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXtst
1269:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1270:debug:main adding the default universal variant
1271:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1272:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1273:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1274:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1275:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1276:debug:main No need to upgrade! xorg-libXtst 1.2.2_0 >= xorg-libXtst 1.2.2_0
1277:debug:main epoch: in tree: 0 installed: 0
1278:debug:main xorg-recordproto 1.14.2_0 exists in the ports tree
1279:debug:main xorg-recordproto 1.14.2_0  is the latest installed
1280:debug:main xorg-recordproto 1.14.2_0  is active
1281:debug:main Merging existing variants '' into variants
1282:debug:main new fully merged portvariants:
1283:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-recordproto
1284:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1285:debug:main only one arch supported, so not adding the default universal variant
1286:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1287:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1288:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1289:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1290:debug:main No need to upgrade! xorg-recordproto 1.14.2_0 >= xorg-recordproto 1.14.2_0
1291:debug:main epoch: in tree: 0 installed: 0
1292:debug:main xorg-libdmx 1.1.3_0 exists in the ports tree
1293:debug:main xorg-libdmx 1.1.3_0  is the latest installed
1294:debug:main xorg-libdmx 1.1.3_0  is active
1295:debug:main Merging existing variants '' into variants
1296:debug:main new fully merged portvariants:
1297:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libdmx
1298:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1299:debug:main adding the default universal variant
1300:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1301:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1302:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1303:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1304:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1305:debug:main No need to upgrade! xorg-libdmx 1.1.3_0 >= xorg-libdmx 1.1.3_0
1306:debug:main epoch: in tree: 0 installed: 0
1307:debug:main xorg-dmxproto 2.3.1_0 exists in the ports tree
1308:debug:main xorg-dmxproto 2.3.1_0  is the latest installed
1309:debug:main xorg-dmxproto 2.3.1_0  is active
1310:debug:main Merging existing variants '' into variants
1311:debug:main new fully merged portvariants:
1312:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-dmxproto
1313:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
1314:debug:main only one arch supported, so not adding the default universal variant
1315:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1316:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1317:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1318:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1319:debug:main No need to upgrade! xorg-dmxproto 2.3.1_0 >= xorg-dmxproto 2.3.1_0
1320:msg:main --->  Computing dependencies for pymol:info:main .:debug:main pymol has no conflicts
1321:debug:main Found Dependency: path: /usr/bin filename: svn regex: ^svn$
1322:debug:main Searching for dependency: subversion
1323:debug:main Didn't find receipt, going to depspec regex for: subversion
1324:debug:main Found Dependency: path: /usr/bin filename: svn regex: ^svn$
1325:debug:main Searching for dependency: python27
1326:debug:main Found Dependency: receipt exists for python27
1327:debug:main Searching for dependency: freeglut
1328:debug:main Found Dependency: receipt exists for freeglut
1329:debug:main Searching for dependency: freetype
1330:debug:main Found Dependency: receipt exists for freetype
1331:debug:main Searching for dependency: glew
1332:debug:main Found Dependency: receipt exists for glew
1333:debug:main Searching for dependency: libpng
1334:debug:main Found Dependency: receipt exists for libpng
1335:debug:main Searching for dependency: libGLU
1336:debug:main Found Dependency: receipt exists for libGLU
1337:debug:main Searching for dependency: mesa
1338:debug:main Found Dependency: receipt exists for mesa
1339:debug:main Searching for dependency: py27-numpy
1340:debug:main Found Dependency: receipt exists for py27-numpy
1341:debug:main Searching for dependency: py27-pmw
1342:debug:main Found Dependency: receipt exists for py27-pmw
1343:debug:main Searching for dependency: py27-scipy
1344:debug:main Found Dependency: receipt exists for py27-scipy
1345:debug:main Searching for dependency: py27-tkinter
1346:debug:main Found Dependency: receipt exists for py27-tkinter
1347:debug:main Searching for dependency: xdpyinfo
1348:debug:main Found Dependency: receipt exists for xdpyinfo
1349:msg:main
1350:debug:main Executing org.macports.main (pymol)
1351:debug:main changing euid/egid - current euid: 0 - current egid: 0
1352:debug:main egid changed to: 501
1353:debug:main euid changed to: 502
1354:debug:archivefetch archivefetch phase started at Sun Oct 25 14:53:57 EDT 2015
1355:msg:archivefetch --->  Fetching archive for pymol
1356:warn:archivefetch Your DNS servers incorrectly claim to know the address of nonexistent hosts. This may cause checksum mismatches for some ports. See this page for more information: <https://trac.macports.org/wiki/MisbehavingServers>
1357:debug:archivefetch Executing proc-pre-org.macports.archivefetch-archivefetch-0
1358:debug:archivefetch Active variants check for archivefetch-type install considers depends_lib depends_run: python27 freeglut freetype glew libpng libGLU mesa py27-numpy py27-pmw py27-scipy py27-tkinter xdpyinfo
1359:debug:archivefetch Ignoring active_variants requirement for tcl because archivefetch-type install only considers depends_lib depends_run and those do not contain tcl
1360:debug:archivefetch Ignoring active_variants requirement for tk because archivefetch-type install only considers depends_lib depends_run and those do not contain tk
1361:debug:archivefetch Executing org.macports.archivefetch (pymol)
1362:debug:archivefetch euid/egid changed to: 0/0
1363:debug:archivefetch chowned /opt/local/var/macports/incoming to macports
1364:debug:archivefetch euid/egid changed to: 502/501
1365:info:archivefetch --->  pymol-1.7.7.2_0.darwin_12.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
1366:msg:archivefetch --->  Attempting to fetch pymol-1.7.7.2_0.darwin_12.x86_64.tbz2 from http://packages.macports.org/pymol
1367:debug:archivefetch Fetching archive failed:: The requested URL returned error: 404
1368:msg:archivefetch --->  Attempting to fetch pymol-1.7.7.2_0.darwin_12.x86_64.tbz2 from http://lil.fr.packages.macports.org/pymol
1369:debug:archivefetch Fetching archive failed:: The requested URL returned error: 404
1370:msg:archivefetch --->  Attempting to fetch pymol-1.7.7.2_0.darwin_12.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/pymol
1371:debug:archivefetch Fetching archive failed:: The requested URL returned error: 404
1372:debug:archivefetch Privilege de-escalation not attempted as not running as root.
1373:debug:fetch fetch phase started at Sun Oct 25 14:54:02 EDT 2015
1374:notice:fetch --->  Fetching distfiles for pymol
1375:debug:fetch Executing org.macports.fetch (pymol)
1376:debug:fetch Environment:
1377CC_PRINT_OPTIONS='YES'
1378CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
1379CPATH='/opt/local/include'
1380LIBRARY_PATH='/opt/local/lib'
1381MACOSX_DEPLOYMENT_TARGET='10.8'
1382:debug:fetch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work" && /usr/bin/svn --non-interactive --trust-server-cert export https://svn.code.sf.net/p/pymol/code/trunk/pymol@4136'
1383:debug:fetch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work" && /usr/bin/svn --non-interactive --trust-server-cert export https://svn.code.sf.net/p/pymol/code/trunk/pymol@4136 2>&1
1384:info:fetch A    pymol
1385:info:fetch A    pymol/test
1386:info:fetch A    pymol/test/headerTest.py
1387:info:fetch A    pymol/test/show
1388:info:fetch A    pymol/test/cyg
1389:info:fetch A    pymol/test/trim.py
1390:info:fetch A    pymol/test/run
1391:info:fetch A    pymol/test/win.py
1392:info:fetch A    pymol/test/inp
1393:info:fetch A    pymol/test/inp/B08.py
1394:info:fetch A    pymol/test/inp/C0200feedback.pml
1395:info:fetch A    pymol/test/inp/C0300session.pml
1396:info:fetch A    pymol/test/inp/M0010load.pml
1397:info:fetch A    pymol/test/inp/C0201extend.pml
1398:info:fetch A    pymol/test/inp/M0025view.pml
1399:info:fetch A    pymol/test/inp/C0740multipdb.pml
1400:info:fetch A    pymol/test/inp/C0050multi.pml
1401:info:fetch A    pymol/test/inp/L0010ccp4read.pml
1402:info:fetch A    pymol/test/inp/C1060controlling.py
1403:info:fetch A    pymol/test/inp/T02.py
1404:info:fetch A    pymol/test/inp/M0001new.pml
1405:info:fetch A    pymol/test/inp/C2000returns.py
1406:info:fetch A    pymol/test/inp/M0053session.pml
1407:info:fetch A    pymol/test/inp/C0170scene.pml
1408:info:fetch A    pymol/test/inp/C1020querying.pml
1409:info:fetch A    pymol/test/inp/M0020multi.pml
1410:info:fetch A    pymol/test/inp/C0060delete.pml
1411:info:fetch A    pymol/test/inp/C0105names.pml
1412:info:fetch A    pymol/test/inp/C1300extras.pml
1413:info:fetch A    pymol/test/inp/C0080create.pml
1414:info:fetch A    pymol/test/inp/C0150alter.pml
1415:info:fetch A    pymol/test/inp/C0800matrices.pml
1416:info:fetch A    pymol/test/inp/L0100isomisc.pml
1417:info:fetch A    pymol/test/inp/C0100select.pml
1418:info:fetch A    pymol/test/inp/B03.py
1419:info:fetch A    pymol/test/inp/C0600util.pml
1420:info:fetch A    pymol/test/inp/C1035wildcards.pml
1421:info:fetch A    pymol/test/inp/B07.py
1422:info:fetch A    pymol/test/inp/C0180embed.pml
1423:info:fetch A    pymol/test/inp/C1200matrix_maps.pml
1424:info:fetch A    pymol/test/inp/C0030pkl.pml
1425:info:fetch A    pymol/test/inp/T01.py
1426:info:fetch A    pymol/test/inp/C0021pdbstr.pml
1427:info:fetch A    pymol/test/inp/M0052session.pml
1428:info:fetch A    pymol/test/inp/L0040isomesh2.pml
1429:info:fetch A    pymol/test/inp/M0021multi.pml
1430:info:fetch A    pymol/test/inp/C0020pdb.pml
1431:info:fetch A    pymol/test/inp/L0200electro.pml
1432:info:fetch A    pymol/test/inp/C0550pseudo.pml
1433:info:fetch A    pymol/test/inp/C1090coulomb.pml
1434:info:fetch A    pymol/test/inp/L0020xplorread.pml
1435:info:fetch A    pymol/test/inp/B02.py
1436:info:fetch A    pymol/test/inp/M0041do.pml
1437:info:fetch A    pymol/test/inp/C1030selecting.pml
1438:info:fetch A    pymol/test/inp/C0027mol2.pml
1439:info:fetch A    pymol/test/inp/C0026sdf.pml
1440:info:fetch A    pymol/test/inp/B06.py
1441:info:fetch A    pymol/test/inp/C0181embed.pml
1442:info:fetch A    pymol/test/inp/C0160get.pml
1443:info:fetch A    pymol/test/inp/C1080isomore.pml
1444:info:fetch A    pymol/test/inp/C1070exporting.pml
1445:info:fetch A    pymol/test/inp/C1010helping.pml
1446:info:fetch A    pymol/test/inp/C0025mol.pml
1447:info:fetch A    pymol/test/inp/C0500misc.pml
1448:info:fetch A    pymol/test/inp/U01.pml
1449:info:fetch A    pymol/test/inp/C0140iterate.pml
1450:info:fetch A    pymol/test/inp/M0051session.pml
1451:info:fetch A    pymol/test/inp/T04.py
1452:info:fetch A    pymol/test/inp/C1100do.py
1453:info:fetch A    pymol/test/inp/C1050fitting.py
1454:info:fetch A    pymol/test/inp/C0700odd.pml
1455:info:fetch A    pymol/test/inp/C1095slice.pml
1456:info:fetch A    pymol/test/inp/B01.py
1457:info:fetch A    pymol/test/inp/B11.py
1458:info:fetch A    pymol/test/inp/C0106order.pml
1459:info:fetch A    pymol/test/inp/C0001quit.pml
1460:info:fetch A    pymol/test/inp/B05.py
1461:info:fetch A    pymol/test/inp/B09.py
1462:info:fetch A    pymol/test/inp/C1040editing.pml
1463:info:fetch A    pymol/test/inp/C0202help_python.pml
1464:info:fetch A    pymol/test/inp/C0070rep.pml
1465:info:fetch A    pymol/test/inp/M0050session.pml
1466:info:fetch A    pymol/test/inp/T03.py
1467:info:fetch A    pymol/test/inp/C0010hello.pml
1468:info:fetch A    pymol/test/inp/C1000viewing.pml
1469:info:fetch A    pymol/test/inp/M0002start.pml
1470:info:fetch A    pymol/test/inp/M0030scene.pml
1471:info:fetch A    pymol/test/inp/C1110matrix_mode.pml
1472:info:fetch A    pymol/test/inp/B10.py
1473:info:fetch A    pymol/test/inp/M0040do.pml
1474:info:fetch A    pymol/test/inp/B04.py
1475:info:fetch A    pymol/test/inp/L0030isomesh.pml
1476:info:fetch A    pymol/test/dat
1477:info:fetch A    pymol/test/dat/small03.mol2
1478:info:fetch A    pymol/test/dat/helix_amber.pdb
1479:info:fetch A    pymol/test/dat/water.pdb
1480:info:fetch A    pymol/test/dat/tiny.pdb
1481:info:fetch A    pymol/test/dat/3al1.r3d
1482:info:fetch A    pymol/test/dat/il2.pdb
1483:info:fetch A    pymol/test/dat/pept.pkl
1484:info:fetch A    pymol/test/dat/small01.mol
1485:info:fetch A    pymol/test/dat/pept.r3d
1486:info:fetch A    pymol/test/dat/ligs3d.sdf
1487:info:fetch A    pymol/test/dat/3al1.pdb
1488:info:fetch A    pymol/test/dat/names.pdb
1489:info:fetch A    pymol/test/dat/embed01.p1m
1490:info:fetch A    pymol/test/dat/1tii.pdb
1491:info:fetch A    pymol/test/dat/embed02.p1m
1492:info:fetch A    pymol/test/dat/odd01.pdb
1493:info:fetch A    pymol/test/dat/embed03.p1m
1494:info:fetch A    pymol/test/dat/pept.pdb
1495:info:fetch A    pymol/test/dat/odd02.pdb
1496:info:fetch A    pymol/test/dat/embed04.p1m
1497:info:fetch A    pymol/test/dat/embed05.p1m
1498:info:fetch A    pymol/test/dat/embed06.p1m
1499:info:fetch A    pymol/test/dat/small02.pdb
1500:info:fetch A    pymol/test/ref
1501:info:fetch A    pymol/test/ref/C0025mol.log
1502:info:fetch A    pymol/test/ref/C0500misc.log
1503:info:fetch A    pymol/test/ref/C0700odd.1.pdb
1504:info:fetch A    pymol/test/ref/C0700odd.2.pdb
1505:info:fetch A    pymol/test/ref/U01.log
1506:info:fetch A    pymol/test/ref/C0140iterate.log
1507:info:fetch A    pymol/test/ref/C0700odd.3.pdb
1508:info:fetch A    pymol/test/ref/M0051session.log
1509:info:fetch A    pymol/test/ref/C0700odd.4.pdb
1510:info:fetch A    pymol/test/ref/C2000returns.log
1511:info:fetch A    pymol/test/ref/C0700odd.5.pdb
1512:info:fetch A    pymol/test/ref/C0700odd.6.pdb
1513:info:fetch A    pymol/test/ref/C0700odd.7.pdb
1514:info:fetch A    pymol/test/ref/C0700odd.8.pdb
1515:info:fetch A    pymol/test/ref/C0700odd.9.pdb
1516:info:fetch A    pymol/test/ref/C1050fitting.log
1517:info:fetch A    pymol/test/ref/C0700odd.log
1518:info:fetch A    pymol/test/ref/C1095slice.log
1519:info:fetch A    pymol/test/ref/C0700odd.A.pdb
1520:info:fetch A    pymol/test/ref/C0700odd.B.pdb
1521:info:fetch A    pymol/test/ref/C0700odd.C.pdb
1522:info:fetch A    pymol/test/ref/C0106order.log
1523:info:fetch A    pymol/test/ref/C0700odd.D.pdb
1524:info:fetch A    pymol/test/ref/C0001quit.log
1525:info:fetch A    pymol/test/ref/C0700odd.E.pdb
1526:info:fetch A    pymol/test/ref/C0700odd.F.pdb
1527:info:fetch A    pymol/test/ref/C1040editing.log
1528:info:fetch A    pymol/test/ref/C0070rep.log
1529:info:fetch A    pymol/test/ref/C0202help_python.log
1530:info:fetch A    pymol/test/ref/C1060controlling.log
1531:info:fetch A    pymol/test/ref/M0050session.log
1532:info:fetch A    pymol/test/ref/C0010hello.log
1533:info:fetch A    pymol/test/ref/M0002start.log
1534:info:fetch A    pymol/test/ref/C1000viewing.log
1535:info:fetch A    pymol/test/ref/M0030scene.log
1536:info:fetch A    pymol/test/ref/C1110matrix_mode.log
1537:info:fetch A    pymol/test/ref/M0040do.log
1538:info:fetch A    pymol/test/ref/L0030isomesh.log
1539:info:fetch A    pymol/test/ref/C0300session.log
1540:info:fetch A    pymol/test/ref/C0200feedback.log
1541:info:fetch A    pymol/test/ref/M0010load.log
1542:info:fetch A    pymol/test/ref/C0201extend.log
1543:info:fetch A    pymol/test/ref/M0025view.log
1544:info:fetch A    pymol/test/ref/C0740multipdb.log
1545:info:fetch A    pymol/test/ref/C0080create.1.pdb
1546:info:fetch A    pymol/test/ref/L0010ccp4read.log
1547:info:fetch A    pymol/test/ref/C0050multi.log
1548:info:fetch A    pymol/test/ref/C0080create.2.pdb
1549:info:fetch A    pymol/test/ref/C0150alter.1.pdb
1550:info:fetch A    pymol/test/ref/T01.log
1551:info:fetch A    pymol/test/ref/M0001new.log
1552:info:fetch A    pymol/test/ref/C1100do.log
1553:info:fetch A    pymol/test/ref/C0700.odd.G.pdb
1554:info:fetch A    pymol/test/ref/M0053session.log
1555:info:fetch A    pymol/test/ref/C0170scene.log
1556:info:fetch A    pymol/test/ref/C0700.odd.H.pdb
1557:info:fetch A    pymol/test/ref/M0020multi.log
1558:info:fetch A    pymol/test/ref/C1020querying.log
1559:info:fetch A    pymol/test/ref/C0060delete.log
1560:info:fetch A    pymol/test/ref/C0105names.log
1561:info:fetch A    pymol/test/ref/C1300extras.log
1562:info:fetch A    pymol/test/ref/C0080create.log
1563:info:fetch A    pymol/test/ref/C0150alter.log
1564:info:fetch A    pymol/test/ref/C0800matrices.log
1565:info:fetch A    pymol/test/ref/C0100select.log
1566:info:fetch A    pymol/test/ref/L0100isomisc.log
1567:info:fetch A    pymol/test/ref/C0600util.log
1568:info:fetch A    pymol/test/ref/C1035wildcards.log
1569:info:fetch A    pymol/test/ref/C0180embed.log
1570:info:fetch A    pymol/test/ref/C1200matrix_maps.log
1571:info:fetch A    pymol/test/ref/C0030pkl.log
1572:info:fetch A    pymol/test/ref/C0021pdbstr.log
1573:info:fetch A    pymol/test/ref/M0052session.log
1574:info:fetch A    pymol/test/ref/L0040isomesh2.log
1575:info:fetch A    pymol/test/ref/C0020pdb.log
1576:info:fetch A    pymol/test/ref/M0021multi.log
1577:info:fetch A    pymol/test/ref/L0200electro.log
1578:info:fetch A    pymol/test/ref/C0550pseudo.log
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1594:info:fetch A    pymol/LICENSE
1595:info:fetch A    pymol/ov
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1599:info:fetch A    pymol/ov/src/OVOneToOne.h
1600:info:fetch A    pymol/ov/src/Makefile.in
1601:info:fetch A    pymol/ov/src/OVOneToAny.cpp
1602:info:fetch A    pymol/ov/src/OVLexicon.cpp
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1604:info:fetch A    pymol/ov/src/ov_utility.cpp
1605:info:fetch A    pymol/ov/src/OVLexicon.h
1606:info:fetch A    pymol/ov/src/ov_utility.h
1607:info:fetch A    pymol/ov/src/OVreturns.h
1608:info:fetch A    pymol/ov/src/ov_types.h
1609:info:fetch A    pymol/ov/src/OVHeapArray.cpp
1610:info:fetch A    pymol/ov/src/OVHeap.cpp
1611:info:fetch A    pymol/ov/src/OVRandom.cpp
1612:info:fetch A    pymol/ov/src/OVHeapArray.h
1613:info:fetch A    pymol/ov/src/ov_defines.h
1614:info:fetch A    pymol/ov/src/OVHeap.h
1615:info:fetch A    pymol/ov/src/Makefile.am
1616:info:fetch A    pymol/ov/src/OVContext.cpp
1617:info:fetch A    pymol/ov/src/OVRandom.h
1618:info:fetch A    pymol/ov/src/OVOneToOne.cpp
1619:info:fetch A    pymol/ov/src/ov_status.h
1620:info:fetch A    pymol/ov/src/ov_port.h
1621:info:fetch A    pymol/PACKAGING
1622:info:fetch A    pymol/AUTHORS
1623:info:fetch A    pymol/create_shadertext.py
1624:info:fetch A    pymol/setup.py
1625:info:fetch A    pymol/scripts
1626:info:fetch A    pymol/scripts/metaphorics
1627:info:fetch A    pymol/scripts/metaphorics/annotate.pml
1628:info:fetch A    pymol/scripts/metaphorics/alignment.pml
1629:info:fetch A    pymol/scripts/metaphorics/fedora.pml
1630:info:fetch A    pymol/ChangeLog
1631:info:fetch A    pymol/.svnignore
1632:info:fetch A    pymol/layer0
1633:info:fetch A    pymol/layer0/Util2.cpp
1634:info:fetch A    pymol/layer0/Texture.cpp
1635:info:fetch A    pymol/layer0/os_types.h
1636:info:fetch A    pymol/layer0/ShaderMgr.cpp
1637:info:fetch A    pymol/layer0/Util.cpp
1638:info:fetch A    pymol/layer0/Word.h
1639:info:fetch A    pymol/layer0/Crystal.cpp
1640:info:fetch A    pymol/layer0/Deferred.h
1641:info:fetch A    pymol/layer0/SphereData.h
1642:info:fetch A    pymol/layer0/Err.cpp
1643:info:fetch A    pymol/layer0/Feedback.h
1644:info:fetch A    pymol/layer0/Isosurf.cpp
1645:info:fetch A    pymol/layer0/Version.h
1646:info:fetch A    pymol/layer0/Match.cpp
1647:info:fetch A    pymol/layer0/Tetsurf.cpp
1648:info:fetch A    pymol/layer0/Raw.h
1649:info:fetch A    pymol/layer0/Block.h
1650:info:fetch A    pymol/layer0/os_std.h
1651:info:fetch A    pymol/layer0/MemoryCache.h
1652:info:fetch A    pymol/layer0/Vector.cpp
1653:info:fetch A    pymol/layer0/Matrix.cpp
1654:info:fetch A    pymol/layer0/Texture.h
1655:info:fetch A    pymol/layer0/os_gl.h
1656:info:fetch A    pymol/layer0/PyMOLGlobals.h
1657:info:fetch A    pymol/layer0/Triangle.h
1658:info:fetch A    pymol/layer0/Parse.cpp
1659:info:fetch A    pymol/layer0/Word.cpp
1660:info:fetch A    pymol/layer0/os_predef.h
1661:info:fetch A    pymol/layer0/ShaderMgr.h
1662:info:fetch A    pymol/layer0/PyMOLOptions.h
1663:info:fetch A    pymol/layer0/Queue.cpp
1664:info:fetch A    pymol/layer0/os_proprietary.h
1665:info:fetch A    pymol/layer0/Sphere.cpp
1666:info:fetch A    pymol/layer0/os_python.h
1667:info:fetch A    pymol/layer0/os_unix.h
1668:info:fetch A    pymol/layer0/Raw.cpp
1669:info:fetch A    pymol/layer0/MyPNG.cpp
1670:info:fetch A    pymol/layer0/Err.h
1671:info:fetch A    pymol/layer0/Pixmap.cpp
1672:info:fetch A    pymol/layer0/Isosurf.h
1673:info:fetch A    pymol/layer0/Match.h
1674:info:fetch A    pymol/layer0/Tetsurf.h
1675:info:fetch A    pymol/layer0/os_gl.cpp
1676:info:fetch A    pymol/layer0/OOMac.h
1677:info:fetch A    pymol/layer0/os_time.h
1678:info:fetch A    pymol/layer0/Triangle.cpp
1679:info:fetch A    pymol/layer0/Vector.h
1680:info:fetch A    pymol/layer0/Matrix.h
1681:info:fetch A    pymol/layer0/Parse.h
1682:info:fetch A    pymol/layer0/Map.h
1683:info:fetch A    pymol/layer0/MemoryDebug.h
1684:info:fetch A    pymol/layer0/File.h
1685:info:fetch A    pymol/layer0/ListMacros.h
1686:info:fetch A    pymol/layer0/Debug.cpp
1687:info:fetch A    pymol/layer0/Field.h
1688:info:fetch A    pymol/layer0/Queue.h
1689:info:fetch A    pymol/layer0/Sphere.h
1690:info:fetch A    pymol/layer0/MyPNG.h
1691:info:fetch A    pymol/layer0/Tracker.h
1692:info:fetch A    pymol/layer0/Pixmap.h
1693:info:fetch A    pymol/layer0/Util2.h
1694:info:fetch A    pymol/layer0/os_limits.h
1695:info:fetch A    pymol/layer0/Map.cpp
1696:info:fetch A    pymol/layer0/File.cpp
1697:info:fetch A    pymol/layer0/Base.h
1698:info:fetch A    pymol/layer0/MemoryDebug.cpp
1699:info:fetch A    pymol/layer0/Deferred.cpp
1700:info:fetch A    pymol/layer0/Util.h
1701:info:fetch A    pymol/layer0/Field.cpp
1702:info:fetch A    pymol/layer0/Feedback.cpp
1703:info:fetch A    pymol/layer0/Crystal.h
1704:info:fetch A    pymol/layer0/Block.cpp
1705:info:fetch A    pymol/layer0/Tracker.cpp
1706:info:fetch A    pymol/layer0/Debug.h
1707:info:fetch A    pymol/layer0/MemoryCache.cpp
1708:info:fetch A    pymol/README
1709:info:fetch A    pymol/layer1
1710:info:fetch A    pymol/layer1/Pop.cpp
1711:info:fetch A    pymol/layer1/Wizard.cpp
1712:info:fetch A    pymol/layer1/Basis.h
1713:info:fetch A    pymol/layer1/CGO.h
1714:info:fetch A    pymol/layer1/Extrude.cpp
1715:info:fetch A    pymol/layer1/Setting.h
1716:info:fetch A    pymol/layer1/Color.h
1717:info:fetch A    pymol/layer1/ScrollBar.cpp
1718:info:fetch A    pymol/layer1/Movie.h
1719:info:fetch A    pymol/layer1/FontGLUTHel10.cpp
1720:info:fetch A    pymol/layer1/Seq.h
1721:info:fetch A    pymol/layer1/FontGLUTHel12.cpp
1722:info:fetch A    pymol/layer1/Ortho.h
1723:info:fetch A    pymol/layer1/Ray.h
1724:info:fetch A    pymol/layer1/TypeFace.cpp
1725:info:fetch A    pymol/layer1/Basis.cpp
1726:info:fetch A    pymol/layer1/Pop.h
1727:info:fetch A    pymol/layer1/P.h
1728:info:fetch A    pymol/layer1/FontGLUTHel18.cpp
1729:info:fetch A    pymol/layer1/Wizard.h
1730:info:fetch A    pymol/layer1/FontType.cpp
1731:info:fetch A    pymol/layer1/View.cpp
1732:info:fetch A    pymol/layer1/Setting.cpp
1733:info:fetch A    pymol/layer1/Movie.cpp
1734:info:fetch A    pymol/layer1/Extrude.h
1735:info:fetch A    pymol/layer1/Rep.cpp
1736:info:fetch A    pymol/layer1/Ray.cpp
1737:info:fetch A    pymol/layer1/Ortho.cpp
1738:info:fetch A    pymol/layer1/Character.cpp
1739:info:fetch A    pymol/layer1/SettingInfo.h
1740:info:fetch A    pymol/layer1/P.cpp
1741:info:fetch A    pymol/layer1/COLLADA.cpp
1742:info:fetch A    pymol/layer1/FontGLUT.cpp
1743:info:fetch A    pymol/layer1/ButMode.h
1744:info:fetch A    pymol/layer1/TypeFace.h
1745:info:fetch A    pymol/layer1/Font.cpp
1746:info:fetch A    pymol/layer1/FontTTF2.h
1747:info:fetch A    pymol/layer1/FontType.h
1748:info:fetch A    pymol/layer1/View.h
1749:info:fetch A    pymol/layer1/Control.cpp
1750:info:fetch A    pymol/layer1/CGOStruct.h
1751:info:fetch A    pymol/layer1/Shaker.h
1752:info:fetch A    pymol/layer1/Text.cpp
1753:info:fetch A    pymol/layer1/FontGLUT9x15.cpp
1754:info:fetch A    pymol/layer1/PConv.h
1755:info:fetch A    pymol/layer1/Rep.h
1756:info:fetch A    pymol/layer1/PyMOLObject.h
1757:info:fetch A    pymol/layer1/Symmetry.h
1758:info:fetch A    pymol/layer1/ButMode.cpp
1759:info:fetch A    pymol/layer1/Character.h
1760:info:fetch A    pymol/layer1/Scene.h
1761:info:fetch A    pymol/layer1/FontGLUT.h
1762:info:fetch A    pymol/layer1/PConvArgs.h
1763:info:fetch A    pymol/layer1/CGO.cpp
1764:info:fetch A    pymol/layer1/Font.h
1765:info:fetch A    pymol/layer1/Shaker.cpp
1766:info:fetch A    pymol/layer1/Color.cpp
1767:info:fetch A    pymol/layer1/Control.h
1768:info:fetch A    pymol/layer1/PConv.cpp
1769:info:fetch A    pymol/layer1/FontGLUT8x13.cpp
1770:info:fetch A    pymol/layer1/PyMOLObject.cpp
1771:info:fetch A    pymol/layer1/ScrollBar.h
1772:info:fetch A    pymol/layer1/Seq.cpp
1773:info:fetch A    pymol/layer1/Text.h
1774:info:fetch A    pymol/layer1/Symmetry.cpp
1775:info:fetch A    pymol/layer1/FontTTF.h
1776:info:fetch A    pymol/layer1/Scene.cpp
1777:info:fetch A    pymol/layer2
1778:info:fetch A    pymol/layer2/SculptCache.cpp
1779:info:fetch A    pymol/layer2/ObjectGadgetRamp.cpp
1780:info:fetch A    pymol/layer2/ObjectVolume.h
1781:info:fetch A    pymol/layer2/ObjectCGO.h
1782:info:fetch A    pymol/layer2/ObjectAlignment.cpp
1783:info:fetch A    pymol/layer2/RepCylBond.h
1784:info:fetch A    pymol/layer2/GadgetSet.cpp
1785:info:fetch A    pymol/layer2/RepDistDash.cpp
1786:info:fetch A    pymol/layer2/ObjectMolecule2.cpp
1787:info:fetch A    pymol/layer2/AtomInfo.h
1788:info:fetch A    pymol/layer2/ObjectMesh.cpp
1789:info:fetch A    pymol/layer2/ObjectGroup.cpp
1790:info:fetch A    pymol/layer2/DistSet.h
1791:info:fetch A    pymol/layer2/ObjectSurface.h
1792:info:fetch A    pymol/layer2/RepDihedral.h
1793:info:fetch A    pymol/layer2/RepLabel.h
1794:info:fetch A    pymol/layer2/ObjectSlice.h
1795:info:fetch A    pymol/layer2/VFont.cpp
1796:info:fetch A    pymol/layer2/ObjectCGO.cpp
1797:info:fetch A    pymol/layer2/RepCylBond.cpp
1798:info:fetch A    pymol/layer2/RepSphere.h
1799:info:fetch A    pymol/layer2/SculptCache.h
1800:info:fetch A    pymol/layer2/ObjectMap.cpp
1801:info:fetch A    pymol/layer2/ObjectGadgetRamp.h
1802:info:fetch A    pymol/layer2/RepMesh.h
1803:info:fetch A    pymol/layer2/RepDistLabel.cpp
1804:info:fetch A    pymol/layer2/CifMoleculeReader.cpp
1805:info:fetch A    pymol/layer2/Sculpt.cpp
1806:info:fetch A    pymol/layer2/RepCartoon.cpp
1807:info:fetch A    pymol/layer2/RepDistDash.h
1808:info:fetch A    pymol/layer2/ObjectSurface.cpp
1809:info:fetch A    pymol/layer2/DistSet.cpp
1810:info:fetch A    pymol/layer2/RepWireBond.cpp
1811:info:fetch A    pymol/layer2/CoordSet.cpp
1812:info:fetch A    pymol/layer2/RepRibbon.cpp
1813:info:fetch A    pymol/layer2/RepDihedral.cpp
1814:info:fetch A    pymol/layer2/RepNonbondedSphere.cpp
1815:info:fetch A    pymol/layer2/ObjectCallback.h
1816:info:fetch A    pymol/layer2/ObjectDist.cpp
1817:info:fetch A    pymol/layer2/ObjectMolecule.cpp
1818:info:fetch A    pymol/layer2/RepSphere.cpp
1819:info:fetch A    pymol/layer2/RepEllipsoid.h
1820:info:fetch A    pymol/layer2/VFont.h
1821:info:fetch A    pymol/layer2/RepDot.h
1822:info:fetch A    pymol/layer2/RepMesh.cpp
1823:info:fetch A    pymol/layer2/RepSurface.h
1824:info:fetch A    pymol/layer2/CifFile.h
1825:info:fetch A    pymol/layer2/ObjectMap.h
1826:info:fetch A    pymol/layer2/Sculpt.h
1827:info:fetch A    pymol/layer2/RepDistLabel.h
1828:info:fetch A    pymol/layer2/RepCartoon.h
1829:info:fetch A    pymol/layer2/ObjectGadget.cpp
1830:info:fetch A    pymol/layer2/RepNonbonded.h
1831:info:fetch A    pymol/layer2/ObjectCallback.cpp
1832:info:fetch A    pymol/layer2/RepWireBond.h
1833:info:fetch A    pymol/layer2/RepRibbon.h
1834:info:fetch A    pymol/layer2/CoordSet.h
1835:info:fetch A    pymol/layer2/RepNonbondedSphere.h
1836:info:fetch A    pymol/layer2/RepEllipsoid.cpp
1837:info:fetch A    pymol/layer2/RepDot.cpp
1838:info:fetch A    pymol/layer2/ObjectVolume.cpp
1839:info:fetch A    pymol/layer2/RepSurface.cpp
1840:info:fetch A    pymol/layer2/ObjectDist.h
1841:info:fetch A    pymol/layer2/CifFile.cpp
1842:info:fetch A    pymol/layer2/ObjectMolecule.h
1843:info:fetch A    pymol/layer2/RepAngle.h
1844:info:fetch A    pymol/layer2/ObjectAlignment.h
1845:info:fetch A    pymol/layer2/GadgetSet.h
1846:info:fetch A    pymol/layer2/AtomInfo.cpp
1847:info:fetch A    pymol/layer2/RepNonbonded.cpp
1848:info:fetch A    pymol/layer2/CifBondDict.h
1849:info:fetch A    pymol/layer2/RepLabel.cpp
1850:info:fetch A    pymol/layer2/ObjectSlice.cpp
1851:info:fetch A    pymol/layer2/ObjectGadget.h
1852:info:fetch A    pymol/layer2/ObjectGroup.h
1853:info:fetch A    pymol/layer2/ObjectMesh.h
1854:info:fetch A    pymol/layer2/RepAngle.cpp
1855:info:fetch A    pymol/layer3
1856:info:fetch A    pymol/layer3/Seeker.cpp
1857:info:fetch A    pymol/layer3/PlugIOManager.h
1858:info:fetch A    pymol/layer3/Selector.cpp
1859:info:fetch A    pymol/layer3/Executive.cpp
1860:info:fetch A    pymol/layer3/AtomIterators.h
1861:info:fetch A    pymol/layer3/MovieScene.h
1862:info:fetch A    pymol/layer3/Seeker.h
1863:info:fetch A    pymol/layer3/Selector.h
1864:info:fetch A    pymol/layer3/Editor.cpp
1865:info:fetch A    pymol/layer3/Executive.h
1866:info:fetch A    pymol/layer3/PlugIOManager.cpp
1867:info:fetch A    pymol/layer3/Editor.h
1868:info:fetch A    pymol/layer3/Executive_pre.h
1869:info:fetch A    pymol/layer3/AtomIterators.cpp
1870:info:fetch A    pymol/layer3/MovieScene.cpp
1871:info:fetch A    pymol/contrib
1872:info:fetch A    pymol/contrib/Makefile.delsci
1873:info:fetch A    pymol/contrib/uiuc
1874:info:fetch A    pymol/contrib/uiuc/plugins
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1878:info:fetch A    pymol/contrib/uiuc/plugins/include/molfile_plugin.h
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1880:info:fetch A    pymol/contrib/uiuc/plugins/include/import_graphics_plugin.h
1881:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin
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1885:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c
1886:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c
1887:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp
1888:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp
1889:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp
1890:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c
1891:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp
1892:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp
1893:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp
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1895:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp
1896:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp
1897:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp
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1900:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp
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1904:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h
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1906:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp
1907:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c
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1909:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h
1910:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h
1911:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/inthash.h
1912:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp
1913:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c
1914:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp
1915:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c
1916:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp
1917:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c
1918:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp
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2514:info:fetch A    pymol/data/chempy/fragments/nt_arg.pkl
2515:info:fetch A    pymol/data/chempy/fragments/ct_lysn.pkl
2516:info:fetch A    pymol/data/chempy/fragments/ct_met.pkl
2517:info:fetch A    pymol/data/chempy/fragments/ct_argn.pkl
2518:info:fetch A    pymol/data/chempy/fragments/nt_phe.pkl
2519:info:fetch A    pymol/data/chempy/fragments/formic.pkl
2520:info:fetch A    pymol/data/chempy/fragments/ct_ser.pkl
2521:info:fetch A    pymol/data/chempy/fragments/nme.pkl
2522:info:fetch A    pymol/data/chempy/fragments/hip.pkl
2523:info:fetch A    pymol/data/chempy/fragments/asn.pkl
2524:info:fetch A    pymol/data/chempy/fragments/val.pkl
2525:info:fetch A    pymol/data/chempy/fragments/his.pkl
2526:info:fetch A    pymol/data/chempy/fragments/asp.pkl
2527:info:fetch A    pymol/data/chempy/fragments/ct_cys.pkl
2528:info:fetch A    pymol/data/chempy/fragments/lysn.pkl
2529:info:fetch A    pymol/data/chempy/fragments/leu.pkl
2530:info:fetch A    pymol/data/chempy/fragments/ct_gluh.pkl
2531:info:fetch A    pymol/data/chempy/fragments/argn.pkl
2532:info:fetch A    pymol/data/chempy/water.pdb
2533:info:fetch A    pymol/data/chempy/sidechains
2534:info:fetch A    pymol/data/chempy/sidechains/generate1.py
2535:info:fetch A    pymol/data/chempy/sidechains/generate2.py
2536:info:fetch A    pymol/data/chempy/sidechains/sc_bb_dep.pkl
2537:info:fetch A    pymol/data/chempy/sidechains/sc_bb_dep.py
2538:info:fetch A    pymol/data/chempy/sidechains/sc_bb_ind.pkl
2539:info:fetch A    pymol/data/chempy/sidechains/sc_bb_ind.py
2540:info:fetch A    pymol/data/chempy/sidechains/sc_library.pkl
2541:info:fetch A    pymol/data/chempy/tinker
2542:info:fetch A    pymol/data/chempy/tinker/Makefile.delsci
2543:info:fetch A    pymol/data/chempy/tinker/make99_simple.py
2544:info:fetch A    pymol/data/chempy/tinker/parm_simple.dat
2545:info:fetch A    pymol/data/chempy/tinker/parm99_simple.dat
2546:info:fetch A    pymol/data/chempy/tinker/chempy.prm
2547:info:fetch A    pymol/data/chempy/tinker/parm94.dat
2548:info:fetch A    pymol/data/chempy/tinker/parm94_rsm.dat
2549:info:fetch A    pymol/data/chempy/tinker/parm96.dat
2550:info:fetch A    pymol/data/chempy/tinker/parm96_rsm.dat
2551:info:fetch A    pymol/data/chempy/tinker/parm99.dat
2552:info:fetch A    pymol/data/chempy/tinker/make_simple.py
2553:info:fetch A    pymol/data/chempy/tinker/parm_simple.inp
2554:info:fetch A    pymol/data/chempy/tinker/parm99_wld.dat
2555:info:fetch A    pymol/data/shaders
2556:info:fetch A    pymol/data/shaders/bg.vs
2557:info:fetch A    pymol/data/shaders/indicator.fs
2558:info:fetch A    pymol/data/shaders/screen.fs
2559:info:fetch A    pymol/data/shaders/labelscreen.fs
2560:info:fetch A    pymol/data/shaders/label.fs
2561:info:fetch A    pymol/data/shaders/default.fs
2562:info:fetch A    pymol/data/shaders/defaultscreen.fs
2563:info:fetch A    pymol/data/shaders/sphere.fs
2564:info:fetch A    pymol/data/shaders/volume.vs
2565:info:fetch A    pymol/data/shaders/indicator.vs
2566:info:fetch A    pymol/data/shaders/default_es2.fs
2567:info:fetch A    pymol/data/shaders/screen.vs
2568:info:fetch A    pymol/data/shaders/ramp.fs
2569:info:fetch A    pymol/data/shaders/labelscreen.vs
2570:info:fetch A    pymol/data/shaders/label.vs
2571:info:fetch A    pymol/data/shaders/spheredirect.vs
2572:info:fetch A    pymol/data/shaders/sphere_arb_fs.fs
2573:info:fetch A    pymol/data/shaders/anaglyph.fs
2574:info:fetch A    pymol/data/shaders/default.vs
2575:info:fetch A    pymol/data/shaders/defaultscreen.vs
2576:info:fetch A    pymol/data/shaders/compute_fog_color.fs
2577:info:fetch A    pymol/data/shaders/sphere.vs
2578:info:fetch A    pymol/data/shaders/compute_color_for_light.fs
2579:info:fetch A    pymol/data/shaders/cylinder.fs
2580:info:fetch A    pymol/data/shaders/default_es.fs
2581:info:fetch A    pymol/data/shaders/anaglyph_header.fs
2582:info:fetch A    pymol/data/shaders/default_es2.vs
2583:info:fetch A    pymol/data/shaders/ramp.vs
2584:info:fetch A    pymol/data/shaders/shadertext.txt
2585:info:fetch A    pymol/data/shaders/bg.fs
2586:info:fetch A    pymol/data/shaders/cylinder.vs
2587:info:fetch A    pymol/data/shaders/default_es.vs
2588:info:fetch A    pymol/data/shaders/sphere_arb_vs.vs
2589:info:fetch A    pymol/data/shaders/call_compute_color_for_light.fs
2590:info:fetch A    pymol/data/shaders/volume.fs
2591:info:fetch A    pymol/data/tut
2592:info:fetch A    pymol/data/tut/1hpv.pdb
2593:info:fetch A    pymol/data/chem_comp_bond-top100.cif
2594:info:fetch A    pymol/NEWS
2595:info:fetch A    pymol/monkeypatch_distutils.py
2596:info:fetch A    pymol/examples
2597:info:fetch A    pymol/examples/devel
2598:info:fetch A    pymol/examples/devel/hole_vmd_tri.pym
2599:info:fetch A    pymol/examples/devel/cgo_axes.py
2600:info:fetch A    pymol/examples/devel/cgo_label_hack.py
2601:info:fetch A    pymol/examples/devel/sd_annotate.pml
2602:info:fetch A    pymol/examples/devel/count_molecules.py
2603:info:fetch A    pymol/examples/devel/particle01.py
2604:info:fetch A    pymol/examples/devel/gl02.py
2605:info:fetch A    pymol/examples/devel/cgo_3Dtext01.py
2606:info:fetch A    pymol/examples/devel/chempy_model02.py
2607:info:fetch A    pymol/examples/devel/xmlrpc02.py
2608:info:fetch A    pymol/examples/devel/importing.py
2609:info:fetch A    pymol/examples/devel/my_ext_gui.py
2610:info:fetch A    pymol/examples/devel/cgo01.py
2611:info:fetch A    pymol/examples/devel/cgo03.py
2612:info:fetch A    pymol/examples/devel/cgo05.py
2613:info:fetch A    pymol/examples/devel/pick_wiz.py
2614:info:fetch A    pymol/examples/devel/cgo07.py
2615:info:fetch A    pymol/examples/devel/sele_wiz.py
2616:info:fetch A    pymol/examples/devel/scenes_to_movie01.pml
2617:info:fetch A    pymol/examples/devel/webgui02.py
2618:info:fetch A    pymol/examples/devel/syncmol.py
2619:info:fetch A    pymol/examples/devel/cam2crd.pym
2620:info:fetch A    pymol/examples/devel/brick01.py
2621:info:fetch A    pymol/examples/devel/extend_demo01.py
2622:info:fetch A    pymol/examples/devel/mutate01.pml
2623:info:fetch A    pymol/examples/devel/link_demo.py
2624:info:fetch A    pymol/examples/devel/mutate02.py
2625:info:fetch A    pymol/examples/devel/gl01.py
2626:info:fetch A    pymol/examples/devel/particle02.py
2627:info:fetch A    pymol/examples/devel/gl03.py
2628:info:fetch A    pymol/examples/devel/tkwindow.py
2629:info:fetch A    pymol/examples/devel/chempy_model01.py
2630:info:fetch A    pymol/examples/devel/xmlrpc01.py
2631:info:fetch A    pymol/examples/devel/demo.sdf
2632:info:fetch A    pymol/examples/devel/chempy_model03.py
2633:info:fetch A    pymol/examples/devel/cgo02.py
2634:info:fetch A    pymol/examples/devel/cgo04.py
2635:info:fetch A    pymol/examples/devel/start_pymol.py
2636:info:fetch A    pymol/examples/devel/cgo06.py
2637:info:fetch A    pymol/examples/devel/cgo08.py
2638:info:fetch A    pymol/examples/devel/povray01.py
2639:info:fetch A    pymol/examples/devel/webgui01.py
2640:info:fetch A    pymol/examples/devel/click_ordered_list.py
2641:info:fetch A    pymol/examples/devel/membrane.py
2642:info:fetch A    pymol/examples/devel/cgo_plane.py
2643:info:fetch A    pymol/examples/chempy
2644:info:fetch A    pymol/examples/chempy/generate_mmff.py
2645:info:fetch A    pymol/examples/chempy/generate_amber.py
2646:info:fetch A    pymol/examples/cookbook
2647:info:fetch A    pymol/examples/cookbook/build_peptide.py
2648:info:fetch A    pymol/examples/cookbook/dali.py
2649:info:fetch A    pymol/examples/cookbook/ss_xfer.pml
2650:info:fetch A    pymol/examples/cookbook/contact.pml
2651:info:fetch A    pymol/examples/cookbook/packing.pml
2652:info:fetch A    pymol/examples/cookbook/seq_match_sele.pml
2653:info:fetch A    pymol/examples/cookbook/multiclip_ray.pml
2654:info:fetch A    pymol/examples/cookbook/packsurf.pml
2655:info:fetch A    pymol/examples/cookbook/density.pml
2656:info:fetch A    pymol/examples/cookbook/groel_es.pml
2657:info:fetch A    pymol/examples/cookbook/ribosome.pml
2658:info:fetch A    pymol/examples/cookbook/area_diff.pml
2659:info:fetch A    pymol/examples/cookbook/scenes2movie.pml
2660:info:fetch A    pymol/examples/cookbook/symsph.py
2661:info:fetch A    pymol/examples/cookbook/ref_frame.pml
2662:info:fetch A    pymol/examples/launching
2663:info:fetch A    pymol/examples/launching/launch.py
2664:info:fetch A    pymol/examples/launching/launch_viewer1.py
2665:info:fetch A    pymol/examples/launching/launch_viewer2.py
2666:info:fetch A    pymol/examples/launching/launch_demo.py
2667:info:fetch A    pymol/examples/launching/launch_no_tk.py
2668:info:fetch A    pymol/examples/launching/README
2669:info:fetch A    pymol/examples/package
2670:info:fetch A    pymol/examples/package/redhat
2671:info:fetch A    pymol/examples/package/redhat/pymol-0.96-1.rh70.py152.spec
2672:info:fetch A    pymol/examples/package/redhat/pymol-0.96-1.rh62.py152.spec
2673:info:fetch A    pymol/examples/package/redhat/pymol-0.93-1.rh72.py21.spec
2674:info:fetch A    pymol/examples/package/redhat/pymol-0.93-1.rh80.py22.spec
2675:info:fetch A    pymol/examples/package/redhat/pymol-0.93-1.rh90.py22.spec
2676:info:fetch A    pymol/examples/package/redhat/pymol-0.93-1.rh73.py22.spec
2677:info:fetch A    pymol/examples/package/redhat/pymol-0.93-1.rh70.py152.spec
2678:info:fetch A    pymol/examples/package/redhat/pymol-0.96-1.rh72.py21.spec
2679:info:fetch A    pymol/examples/package/redhat/pymol-0.96-1.rh80.py22.spec
2680:info:fetch A    pymol/examples/package/redhat/pymol-0.93-1.rh62.py152.spec
2681:info:fetch A    pymol/examples/package/redhat/pymol-0.96-1.rh90.py22.spec
2682:info:fetch A    pymol/examples/package/redhat/pymol-0.96-1.rh73.py22.spec
2683:info:fetch Exported revision 4136.
2684:debug:fetch Privilege de-escalation not attempted as not running as root.
2685:debug:checksum checksum phase started at Sun Oct 25 14:54:33 EDT 2015
2686:notice:checksum --->  Verifying checksums for pymol
2687:debug:checksum Executing org.macports.checksum (pymol)
2688:debug:checksum Privilege de-escalation not attempted as not running as root.
2689:debug:extract extract phase started at Sun Oct 25 14:54:33 EDT 2015
2690:notice:extract --->  Extracting pymol
2691:debug:extract Executing org.macports.extract (pymol)
2692:debug:extract Privilege de-escalation not attempted as not running as root.
2693:debug:patch patch phase started at Sun Oct 25 14:54:33 EDT 2015
2694:debug:patch Executing org.macports.patch (pymol)
2695:notice:patch --->  Applying patches to pymol
2696:info:patch --->  Applying setup_py.diff
2697:debug:patch Environment:
2698CC_PRINT_OPTIONS='YES'
2699CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
2700CPATH='/opt/local/include'
2701LIBRARY_PATH='/opt/local/lib'
2702MACOSX_DEPLOYMENT_TARGET='10.8'
2703:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0'
2704:debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol/files/setup_py.diff'
2705:info:patch patching file setup.py
2706:info:patch Hunk #1 succeeded at 229 (offset -35 lines).
2707:info:patch --->  Applying pymol_shell.diff
2708:debug:patch Environment:
2709CC_PRINT_OPTIONS='YES'
2710CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
2711CPATH='/opt/local/include'
2712LIBRARY_PATH='/opt/local/lib'
2713MACOSX_DEPLOYMENT_TARGET='10.8'
2714:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0'
2715:debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol/files/pymol_shell.diff'
2716:info:patch patching file setup/pymol_macports
2717:info:patch --->  Applying pmg_tk_platform.patch
2718:debug:patch Environment:
2719CC_PRINT_OPTIONS='YES'
2720CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
2721CPATH='/opt/local/include'
2722LIBRARY_PATH='/opt/local/lib'
2723MACOSX_DEPLOYMENT_TARGET='10.8'
2724:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0'
2725:debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol/files/pmg_tk_platform.patch'
2726:info:patch patching file modules/pmg_tk/PMGApp.py
2727:info:patch Hunk #1 succeeded at 213 (offset 3 lines).
2728:info:patch Hunk #2 succeeded at 231 (offset 3 lines).
2729:info:patch patching file modules/pmg_tk/skins/normal/__init__.py
2730:info:patch Hunk #1 succeeded at 291 (offset 20 lines).
2731:info:patch Hunk #2 succeeded at 310 (offset 20 lines).
2732:info:patch Hunk #3 succeeded at 337 (offset 20 lines).
2733:info:patch --->  Applying apbs-psize.patch
2734:debug:patch Environment:
2735CC_PRINT_OPTIONS='YES'
2736CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
2737CPATH='/opt/local/include'
2738LIBRARY_PATH='/opt/local/lib'
2739MACOSX_DEPLOYMENT_TARGET='10.8'
2740:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0'
2741:debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol/files/apbs-psize.patch'
2742:info:patch patching file modules/pmg_tk/startup/apbs_tools.py
2743:info:patch Hunk #1 succeeded at 881 (offset -7 lines).
2744:info:patch --->  Applying pymol-use-glkit.diff
2745:debug:patch Environment:
2746CC_PRINT_OPTIONS='YES'
2747CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
2748CPATH='/opt/local/include'
2749LIBRARY_PATH='/opt/local/lib'
2750MACOSX_DEPLOYMENT_TARGET='10.8'
2751:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0'
2752:debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol/files/pymol-use-glkit.diff'
2753:info:patch patching file layer0/os_gl.cpp
2754:info:patch patching file layer0/os_gl.h
2755:info:patch Hunk #1 succeeded at 33 with fuzz 2 (offset -31 lines).
2756:info:patch patching file layer1/Scene.cpp
2757:info:patch Hunk #2 succeeded at 9073 with fuzz 2 (offset -1 lines).
2758:info:patch patching file setup.py
2759:info:patch Hunk #1 succeeded at 244 (offset -30 lines).
2760:debug:patch Executing proc-post-org.macports.patch-patch-0
2761:info:patch --->  Patching setup.py: s|@PREFIX@|/opt/local|g
2762:debug:patch Executing reinplace: /usr/bin/sed s|@PREFIX@|/opt/local|g < /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup.py >@ file12 2>@stderr
2763:debug:patch euid/egid changed to: 0/0
2764:debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup.py to macports
2765:debug:patch euid/egid changed to: 502/501
2766:debug:patch euid/egid changed to: 0/0
2767:debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup.py
2768:debug:patch euid/egid changed to: 502/501
2769:info:patch --->  Patching pymol_macports: s|@@PYTHON_PKGDIR@@|/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages|g
2770:debug:patch Executing reinplace: /usr/bin/sed s|@@PYTHON_PKGDIR@@|/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages|g < /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports >@ file12 2>@stderr
2771:debug:patch euid/egid changed to: 0/0
2772:debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports to macports
2773:debug:patch euid/egid changed to: 502/501
2774:debug:patch euid/egid changed to: 0/0
2775:debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports
2776:debug:patch euid/egid changed to: 502/501
2777:info:patch --->  Patching pymol_macports: s|@@PYTHON_BINARY@@|/opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7|g
2778:debug:patch Executing reinplace: /usr/bin/sed s|@@PYTHON_BINARY@@|/opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7|g < /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports >@ file12 2>@stderr
2779:debug:patch euid/egid changed to: 0/0
2780:debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports to macports
2781:debug:patch euid/egid changed to: 502/501
2782:debug:patch euid/egid changed to: 0/0
2783:debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports
2784:debug:patch euid/egid changed to: 502/501
2785:info:patch --->  Patching setup.py: s|"-O3",|"-O3", "-g",|g
2786:debug:patch Executing reinplace: /usr/bin/sed {s|"-O3",|"-O3", "-g",|g} < /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup.py >@ file12 2>@stderr
2787:debug:patch euid/egid changed to: 0/0
2788:debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup.py to macports
2789:debug:patch euid/egid changed to: 502/501
2790:debug:patch euid/egid changed to: 0/0
2791:debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup.py
2792:debug:patch euid/egid changed to: 502/501
2793:debug:patch Privilege de-escalation not attempted as not running as root.
2794:debug:configure configure phase started at Sun Oct 25 14:54:33 EDT 2015
2795:notice:configure --->  Configuring pymol
2796:debug:configure Using compiler 'Xcode Clang'
2797:debug:configure Executing proc-pre-org.macports.configure-configure-0
2798:debug:configure Found Dependency: path: /usr/bin filename: svn regex: ^svn$
2799:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: python27 freeglut freetype glew libpng libGLU mesa py27-numpy py27-pmw py27-scipy py27-tkinter xdpyinfo
2800:debug:configure Ignoring active_variants requirement for tcl because source-type install only considers depends_fetch depends_extract depends_lib depends_build depends_run and those do not contain tcl
2801:debug:configure Ignoring active_variants requirement for tk because source-type install only considers depends_fetch depends_extract depends_lib depends_build depends_run and those do not contain tk
2802:debug:configure Executing org.macports.configure (pymol)
2803:debug:configure Privilege de-escalation not attempted as not running as root.
2804:debug:build build phase started at Sun Oct 25 14:54:33 EDT 2015
2805:notice:build --->  Building pymol
2806:debug:build Executing proc-pre-org.macports.build-build-0
2807:debug:build Executing org.macports.build (pymol)
2808:debug:build Privilege de-escalation not attempted as not running as root.
2809:debug:destroot destroot phase started at Sun Oct 25 14:54:33 EDT 2015
2810:notice:destroot --->  Staging pymol into destroot
2811:debug:destroot Can't run destroot under sudo without elevated privileges (due to mtree).
2812:debug:destroot Run destroot without sudo to avoid root privileges.
2813:debug:destroot Going to escalate privileges back to root.
2814:debug:destroot euid changed to: 0. egid changed to: 0.
2815:info:destroot . changed
2816:info:destroot  gid expected 0 found 80 modified
2817:info:destroot ./usr missing (created)
2818:info:destroot . missing (directory not created: File exists)
2819:info:destroot ./Applications missing (created)
2820:info:destroot ./Developer missing (created)
2821:info:destroot ./Library missing (created)
2822:info:destroot . changed
2823:info:destroot  gid expected 80 found 0 modified
2824:info:destroot ./bin missing (created)
2825:info:destroot ./etc missing (created)
2826:info:destroot ./include missing (created)
2827:info:destroot ./lib missing (created)
2828:info:destroot ./lib/pkgconfig missing (created)
2829:info:destroot ./libexec missing (created)
2830:info:destroot ./sbin missing (created)
2831:info:destroot ./share missing (created)
2832:info:destroot ./share/info missing (created)
2833:info:destroot ./share/man missing (created)
2834:info:destroot ./share/man/cat1 missing (created)
2835:info:destroot ./share/man/cat2 missing (created)
2836:info:destroot ./share/man/cat3 missing (created)
2837:info:destroot ./share/man/cat4 missing (created)
2838:info:destroot ./share/man/cat5 missing (created)
2839:info:destroot ./share/man/cat6 missing (created)
2840:info:destroot ./share/man/cat7 missing (created)
2841:info:destroot ./share/man/cat8 missing (created)
2842:info:destroot ./share/man/cat9 missing (created)
2843:info:destroot ./share/man/catl missing (created)
2844:info:destroot ./share/man/catn missing (created)
2845:info:destroot ./share/man/man1 missing (created)
2846:info:destroot ./share/man/man2 missing (created)
2847:info:destroot ./share/man/man3 missing (created)
2848:info:destroot ./share/man/man4 missing (created)
2849:info:destroot ./share/man/man5 missing (created)
2850:info:destroot ./share/man/man6 missing (created)
2851:info:destroot ./share/man/man7 missing (created)
2852:info:destroot ./share/man/man8 missing (created)
2853:info:destroot ./share/man/man9 missing (created)
2854:info:destroot ./share/man/manl missing (created)
2855:info:destroot ./share/man/mann missing (created)
2856:info:destroot ./share/nls missing (created)
2857:info:destroot ./share/nls/C missing (created)
2858:info:destroot ./share/nls/af_ZA.ISO8859-1 missing (created)
2859:info:destroot ./share/nls/af_ZA.ISO8859-15 missing (created)
2860:info:destroot ./share/nls/bg_BG.CP1251 missing (created)
2861:info:destroot ./share/nls/cs_CZ.ISO8859-2 missing (created)
2862:info:destroot ./share/nls/da_DK.ISO8859-1 missing (created)
2863:info:destroot ./share/nls/da_DK.ISO8859-15 missing (created)
2864:info:destroot ./share/nls/de_AT.ISO8859-1 missing (created)
2865:info:destroot ./share/nls/de_AT.ISO8859-15 missing (created)
2866:info:destroot ./share/nls/de_CH.ISO8859-1 missing (created)
2867:info:destroot ./share/nls/de_CH.ISO8859-15 missing (created)
2868:info:destroot ./share/nls/de_DE.ISO8859-1 missing (created)
2869:info:destroot ./share/nls/de_DE.ISO8859-15 missing (created)
2870:info:destroot ./share/nls/el_GR.ISO8859-7 missing (created)
2871:info:destroot ./share/nls/en_AU.ISO8859-1 missing (created)
2872:info:destroot ./share/nls/en_AU.ISO8859-15 missing (created)
2873:info:destroot ./share/nls/en_AU.US-ASCII missing (created)
2874:info:destroot ./share/nls/en_CA.ISO8859-1 missing (created)
2875:info:destroot ./share/nls/en_CA.ISO8859-15 missing (created)
2876:info:destroot ./share/nls/en_CA.US-ASCII missing (created)
2877:info:destroot ./share/nls/en_GB.ISO8859-1 missing (created)
2878:info:destroot ./share/nls/en_GB.ISO8859-15 missing (created)
2879:info:destroot ./share/nls/en_GB.US-ASCII missing (created)
2880:info:destroot ./share/nls/en_NZ.ISO8859-1 missing (created)
2881:info:destroot ./share/nls/en_NZ.ISO8859-15 missing (created)
2882:info:destroot ./share/nls/en_NZ.US-ASCII missing (created)
2883:info:destroot ./share/nls/en_US.ISO8859-1 missing (created)
2884:info:destroot ./share/nls/en_US.ISO8859-15 missing (created)
2885:info:destroot ./share/nls/es_ES.ISO8859-1 missing (created)
2886:info:destroot ./share/nls/es_ES.ISO8859-15 missing (created)
2887:info:destroot ./share/nls/et_EE.ISO8859-15 missing (created)
2888:info:destroot ./share/nls/fi_FI.ISO8859-1 missing (created)
2889:info:destroot ./share/nls/fi_FI.ISO8859-15 missing (created)
2890:info:destroot ./share/nls/fr_BE.ISO8859-1 missing (created)
2891:info:destroot ./share/nls/fr_BE.ISO8859-15 missing (created)
2892:info:destroot ./share/nls/fr_CA.ISO8859-1 missing (created)
2893:info:destroot ./share/nls/fr_CA.ISO8859-15 missing (created)
2894:info:destroot ./share/nls/fr_CH.ISO8859-1 missing (created)
2895:info:destroot ./share/nls/fr_CH.ISO8859-15 missing (created)
2896:info:destroot ./share/nls/fr_FR.ISO8859-1 missing (created)
2897:info:destroot ./share/nls/fr_FR.ISO8859-15 missing (created)
2898:info:destroot ./share/nls/hi_IN.ISCII-DEV missing (created)
2899:info:destroot ./share/nls/hr_HR.ISO8859-2 missing (created)
2900:info:destroot ./share/nls/hu_HU.ISO8859-2 missing (created)
2901:info:destroot ./share/nls/is_IS.ISO8859-1 missing (created)
2902:info:destroot ./share/nls/is_IS.ISO8859-15 missing (created)
2903:info:destroot ./share/nls/it_CH.ISO8859-1 missing (created)
2904:info:destroot ./share/nls/it_CH.ISO8859-15 missing (created)
2905:info:destroot ./share/nls/it_IT.ISO8859-1 missing (created)
2906:info:destroot ./share/nls/it_IT.ISO8859-15 missing (created)
2907:info:destroot ./share/nls/ja_JP.SJIS missing (created)
2908:info:destroot ./share/nls/ja_JP.eucJP missing (created)
2909:info:destroot ./share/nls/ko_KR.eucKR missing (created)
2910:info:destroot ./share/nls/la_LN.ISO8859-1 missing (created)
2911:info:destroot ./share/nls/la_LN.ISO8859-15 missing (created)
2912:info:destroot ./share/nls/la_LN.ISO8859-2 missing (created)
2913:info:destroot ./share/nls/la_LN.ISO8859-4 missing (created)
2914:info:destroot ./share/nls/la_LN.US-ASCII missing (created)
2915:info:destroot ./share/nls/lt_LT.ISO8859-4 missing (created)
2916:info:destroot ./share/nls/nl_BE.ISO8859-1 missing (created)
2917:info:destroot ./share/nls/nl_BE.ISO8859-15 missing (created)
2918:info:destroot ./share/nls/nl_NL.ISO8859-1 missing (created)
2919:info:destroot ./share/nls/nl_NL.ISO8859-15 missing (created)
2920:info:destroot ./share/nls/no_NO.ISO8859-1 missing (created)
2921:info:destroot ./share/nls/no_NO.ISO8859-15 missing (created)
2922:info:destroot ./share/nls/pl_PL.ISO8859-2 missing (created)
2923:info:destroot ./share/nls/pt_BR.ISO8859-1 missing (created)
2924:info:destroot ./share/nls/pt_PT.ISO8859-1 missing (created)
2925:info:destroot ./share/nls/pt_PT.ISO8859-15 missing (created)
2926:info:destroot ./share/nls/ro_RO.ISO8859-2 missing (created)
2927:info:destroot ./share/nls/ru_RU.CP866 missing (created)
2928:info:destroot ./share/nls/ru_RU.ISO8859-5 missing (created)
2929:info:destroot ./share/nls/ru_RU.KOI8-R missing (created)
2930:info:destroot ./share/nls/sk_SK.ISO8859-2 missing (created)
2931:info:destroot ./share/nls/sl_SI.ISO8859-2 missing (created)
2932:info:destroot ./share/nls/sv_SE.ISO8859-1 missing (created)
2933:info:destroot ./share/nls/sv_SE.ISO8859-15 missing (created)
2934:info:destroot ./share/nls/tr_TR.ISO8859-9 missing (created)
2935:info:destroot ./share/nls/uk_UA.ISO8859-5 missing (created)
2936:info:destroot ./share/nls/uk_UA.KOI8-U missing (created)
2937:info:destroot ./share/nls/zh_CN.eucCN missing (created)
2938:info:destroot ./share/nls/zh_TW.Big5 missing (created)
2939:info:destroot ./share/skel missing (created)
2940:info:destroot ./src missing (created)
2941:info:destroot ./var missing (created)
2942:info:destroot ./www missing (created)
2943:debug:destroot Executing proc-pre-org.macports.destroot-destroot-0
2944:info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/share/doc
2945:info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/share/doc/pymol
2946:info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/share/doc/pymol/examples
2947:debug:destroot Executing proc-pre-org.macports.destroot-destroot-1
2948:debug:destroot Executing org.macports.destroot (pymol)
2949:debug:destroot Environment:
2950CC='/usr/bin/clang'
2951CC_PRINT_OPTIONS='YES'
2952CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
2953CPATH='/opt/local/include'
2954CXX='/usr/bin/clang++'
2955LIBRARY_PATH='/opt/local/lib'
2956MACOSX_DEPLOYMENT_TARGET='10.8'
2957:debug:destroot Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg install --prefix=/opt/local/Library/Frameworks/Python.framework/Versions/2.7 --root=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot'
2958:debug:destroot Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg install --prefix=/opt/local/Library/Frameworks/Python.framework/Versions/2.7 --root=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot
2959:info:destroot fatal: Not a git repository (or any of the parent directories): .git
2960:info:destroot svn: E155007: '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol' is not a working copy
2961:info:destroot running install
2962:info:destroot running build
2963:info:destroot running build_py
2964:info:destroot creating build/lib.macosx-10.8-x86_64-2.7
2965:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/pymol
2966:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/pymol/embed
2967:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/pymol/embed/epymol
2968:info:destroot copying modules/pymol/embed/epymol/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/embed/epymol
2969:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/chempy
2970:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/chempy/tinker
2971:info:destroot copying modules/chempy/tinker/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/chempy/tinker
2972:info:destroot copying modules/chempy/tinker/amber.py -> build/lib.macosx-10.8-x86_64-2.7/chempy/tinker
2973:info:destroot copying modules/chempy/tinker/keyword.py -> build/lib.macosx-10.8-x86_64-2.7/chempy/tinker
2974:info:destroot copying modules/chempy/tinker/realtime.py -> build/lib.macosx-10.8-x86_64-2.7/chempy/tinker
2975:info:destroot copying modules/chempy/tinker/state.py -> build/lib.macosx-10.8-x86_64-2.7/chempy/tinker
2976:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/pmg_tk
2977:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/pmg_tk/skins
2978:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/pmg_tk/skins/demo
2979:info:destroot copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/pmg_tk/skins/demo
2980:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/pmg_tk/startup
2981:info:destroot copying modules/pmg_tk/startup/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/pmg_tk/startup
2982:info:destroot copying modules/pmg_tk/startup/apbs_tools.py -> build/lib.macosx-10.8-x86_64-2.7/pmg_tk/startup
2983:info:destroot copying modules/pmg_tk/startup/remote_pdb_load.py -> build/lib.macosx-10.8-x86_64-2.7/pmg_tk/startup
2984:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/pymol/opengl
2985:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/pymol/opengl/glu
2986:info:destroot copying modules/pymol/opengl/glu/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/opengl/glu
2987:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/pmg_wx
2988:info:destroot copying modules/pmg_wx/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/pmg_wx
2989:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/chempy/fast
2990:info:destroot copying modules/chempy/fast/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/chempy/fast
2991:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/chempy/fragments
2992:info:destroot copying modules/chempy/fragments/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/chempy/fragments
2993:info:destroot copying modules/pmg_tk/skins/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/pmg_tk/skins
2994:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/web
2995:info:destroot copying modules/web/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/web
2996:info:destroot copying modules/web/pymolhttpd.py -> build/lib.macosx-10.8-x86_64-2.7/web
2997:info:destroot copying modules/pymol/embed/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/embed
2998:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/pymol/contrib
2999:info:destroot copying modules/pymol/contrib/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/contrib
3000:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/pymol/opengl/glut
3001:info:destroot copying modules/pymol/opengl/glut/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/opengl/glut
3002:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/pymol2
3003:info:destroot copying modules/pymol2/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/pymol2
3004:info:destroot copying modules/pymol2/cmd2.py -> build/lib.macosx-10.8-x86_64-2.7/pymol2
3005:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/web/examples
3006:info:destroot copying modules/web/examples/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/web/examples
3007:info:destroot copying modules/web/examples/justhttpd.py -> build/lib.macosx-10.8-x86_64-2.7/web/examples
3008:info:destroot copying modules/pmg_tk/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/pmg_tk
3009:info:destroot copying modules/pmg_tk/ColorEditor.py -> build/lib.macosx-10.8-x86_64-2.7/pmg_tk
3010:info:destroot copying modules/pmg_tk/Demo.py -> build/lib.macosx-10.8-x86_64-2.7/pmg_tk
3011:info:destroot copying modules/pmg_tk/PMGApp.py -> build/lib.macosx-10.8-x86_64-2.7/pmg_tk
3012:info:destroot copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.macosx-10.8-x86_64-2.7/pmg_tk
3013:info:destroot copying modules/pmg_tk/SetEditor.py -> build/lib.macosx-10.8-x86_64-2.7/pmg_tk
3014:info:destroot copying modules/pmg_tk/Setting.py -> build/lib.macosx-10.8-x86_64-2.7/pmg_tk
3015:info:destroot copying modules/pmg_tk/TextEditor.py -> build/lib.macosx-10.8-x86_64-2.7/pmg_tk
3016:info:destroot copying modules/pmg_tk/volume.py -> build/lib.macosx-10.8-x86_64-2.7/pmg_tk
3017:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/pmg_tk/skins/normal
3018:info:destroot copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/pmg_tk/skins/normal
3019:info:destroot copying modules/pmg_tk/skins/normal/builder.py -> build/lib.macosx-10.8-x86_64-2.7/pmg_tk/skins/normal
3020:info:destroot copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.macosx-10.8-x86_64-2.7/pmg_tk/skins/normal
3021:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/chempy/champ
3022:info:destroot copying modules/chempy/champ/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/chempy/champ
3023:info:destroot copying modules/chempy/champ/amber99.py -> build/lib.macosx-10.8-x86_64-2.7/chempy/champ
3024:info:destroot copying modules/chempy/champ/assign.py -> build/lib.macosx-10.8-x86_64-2.7/chempy/champ
3025:info:destroot copying modules/chempy/champ/formal_charges.py -> build/lib.macosx-10.8-x86_64-2.7/chempy/champ
3026:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/pymol/embed/wxpymol
3027:info:destroot copying modules/pymol/embed/wxpymol/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/embed/wxpymol
3028:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3029:info:destroot copying modules/pymol/wizard/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3030:info:destroot copying modules/pymol/wizard/annotation.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3031:info:destroot copying modules/pymol/wizard/appearance.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3032:info:destroot copying modules/pymol/wizard/benchmark.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3033:info:destroot copying modules/pymol/wizard/box.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3034:info:destroot copying modules/pymol/wizard/charge.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3035:info:destroot copying modules/pymol/wizard/cleanup.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3036:info:destroot copying modules/pymol/wizard/command.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3037:info:destroot copying modules/pymol/wizard/demo.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3038:info:destroot copying modules/pymol/wizard/density.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3039:info:destroot copying modules/pymol/wizard/distance.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3040:info:destroot copying modules/pymol/wizard/dragging.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3041:info:destroot copying modules/pymol/wizard/fedora.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3042:info:destroot copying modules/pymol/wizard/filter.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3043:info:destroot copying modules/pymol/wizard/label.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3044:info:destroot copying modules/pymol/wizard/measurement.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3045:info:destroot copying modules/pymol/wizard/message.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3046:info:destroot copying modules/pymol/wizard/mutagenesis.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3047:info:destroot copying modules/pymol/wizard/pair_fit.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3048:info:destroot copying modules/pymol/wizard/pseudoatom.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3049:info:destroot copying modules/pymol/wizard/renaming.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3050:info:destroot copying modules/pymol/wizard/sculpting.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3051:info:destroot copying modules/pymol/wizard/security.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3052:info:destroot copying modules/pymol/wizard/stereodemo.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3053:info:destroot copying modules/pymol/wizard/toggle.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/wizard
3054:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/pymol/opengl/gl
3055:info:destroot copying modules/pymol/opengl/gl/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/opengl/gl
3056:info:destroot copying modules/pymol/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3057:info:destroot copying modules/pymol/api.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3058:info:destroot copying modules/pymol/callback.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3059:info:destroot copying modules/pymol/cgo.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3060:info:destroot copying modules/pymol/checking.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3061:info:destroot copying modules/pymol/cmd.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3062:info:destroot copying modules/pymol/colorramping.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3063:info:destroot copying modules/pymol/commanding.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3064:info:destroot copying modules/pymol/completing.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3065:info:destroot copying modules/pymol/computing.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3066:info:destroot copying modules/pymol/constants.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3067:info:destroot copying modules/pymol/constants_palette.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3068:info:destroot copying modules/pymol/controlling.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3069:info:destroot copying modules/pymol/creating.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3070:info:destroot copying modules/pymol/editing.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3071:info:destroot copying modules/pymol/editor.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3072:info:destroot copying modules/pymol/experimenting.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3073:info:destroot copying modules/pymol/exporting.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3074:info:destroot copying modules/pymol/externing.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3075:info:destroot copying modules/pymol/feedingback.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3076:info:destroot copying modules/pymol/fitting.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3077:info:destroot copying modules/pymol/gui.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3078:info:destroot copying modules/pymol/headering.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3079:info:destroot copying modules/pymol/helping.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3080:info:destroot copying modules/pymol/importing.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3081:info:destroot copying modules/pymol/internal.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3082:info:destroot copying modules/pymol/invocation.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3083:info:destroot copying modules/pymol/keyboard.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3084:info:destroot copying modules/pymol/keywords.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3085:info:destroot copying modules/pymol/locking.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3086:info:destroot copying modules/pymol/m4x.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3087:info:destroot copying modules/pymol/menu.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3088:info:destroot copying modules/pymol/monitoring.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3089:info:destroot copying modules/pymol/morphing.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3090:info:destroot copying modules/pymol/movie.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3091:info:destroot copying modules/pymol/moving.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3092:info:destroot copying modules/pymol/parser.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3093:info:destroot copying modules/pymol/parsing.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3094:info:destroot copying modules/pymol/povray.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3095:info:destroot copying modules/pymol/preset.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3096:info:destroot copying modules/pymol/querying.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3097:info:destroot copying modules/pymol/rpc.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3098:info:destroot copying modules/pymol/selecting.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3099:info:destroot copying modules/pymol/selector.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3100:info:destroot copying modules/pymol/setting.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3101:info:destroot copying modules/pymol/shortcut.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3102:info:destroot copying modules/pymol/util.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3103:info:destroot copying modules/pymol/vfont.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3104:info:destroot copying modules/pymol/viewing.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3105:info:destroot copying modules/pymol/wizarding.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3106:info:destroot copying modules/pymol/xray.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3107:info:destroot copying modules/pymol/xwin.py -> build/lib.macosx-10.8-x86_64-2.7/pymol
3108:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/chempy/bmin
3109:info:destroot copying modules/chempy/bmin/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/chempy/bmin
3110:info:destroot copying modules/chempy/bmin/commands.py -> build/lib.macosx-10.8-x86_64-2.7/chempy/bmin
3111:info:destroot copying modules/chempy/bmin/realtime.py -> build/lib.macosx-10.8-x86_64-2.7/chempy/bmin
3112:info:destroot copying modules/chempy/bmin/state.py -> build/lib.macosx-10.8-x86_64-2.7/chempy/bmin
3113:info:destroot copying modules/chempy/bmin/util.py -> build/lib.macosx-10.8-x86_64-2.7/chempy/bmin
3114:info:destroot copying modules/chempy/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3115:info:destroot copying modules/chempy/arc.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3116:info:destroot copying modules/chempy/bond_amber.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3117:info:destroot copying modules/chempy/bond_mmff.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3118:info:destroot copying modules/chempy/bonds.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3119:info:destroot copying modules/chempy/brick.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3120:info:destroot copying modules/chempy/cc1.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3121:info:destroot copying modules/chempy/cex.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3122:info:destroot copying modules/chempy/charge.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3123:info:destroot copying modules/chempy/cif.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3124:info:destroot copying modules/chempy/cpv.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3125:info:destroot copying modules/chempy/dictdb.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3126:info:destroot copying modules/chempy/gamess1.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3127:info:destroot copying modules/chempy/gms.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3128:info:destroot copying modules/chempy/hetatm.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3129:info:destroot copying modules/chempy/io.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3130:info:destroot copying modules/chempy/lst.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3131:info:destroot copying modules/chempy/mae.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3132:info:destroot copying modules/chempy/map.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3133:info:destroot copying modules/chempy/mass.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3134:info:destroot copying modules/chempy/mmd.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3135:info:destroot copying modules/chempy/models.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3136:info:destroot copying modules/chempy/mol.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3137:info:destroot copying modules/chempy/mol2.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3138:info:destroot copying modules/chempy/neighbor.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3139:info:destroot copying modules/chempy/pdb.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3140:info:destroot copying modules/chempy/pkl.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3141:info:destroot copying modules/chempy/place.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3142:info:destroot copying modules/chempy/protein.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3143:info:destroot copying modules/chempy/protein_amber.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3144:info:destroot copying modules/chempy/protein_amber99.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3145:info:destroot copying modules/chempy/protein_mmff.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3146:info:destroot copying modules/chempy/protein_residues.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3147:info:destroot copying modules/chempy/sdf.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3148:info:destroot copying modules/chempy/solvate.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3149:info:destroot copying modules/chempy/water_amber.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3150:info:destroot copying modules/chempy/water_residues.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3151:info:destroot copying modules/chempy/xyz.py -> build/lib.macosx-10.8-x86_64-2.7/chempy
3152:info:destroot creating build/lib.macosx-10.8-x86_64-2.7/pymol/plugins
3153:info:destroot copying modules/pymol/plugins/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/plugins
3154:info:destroot copying modules/pymol/plugins/installation.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/plugins
3155:info:destroot copying modules/pymol/plugins/legacysupport.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/plugins
3156:info:destroot copying modules/pymol/plugins/managergui.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/plugins
3157:info:destroot copying modules/pymol/plugins/repository.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/plugins
3158:info:destroot copying modules/pymol/opengl/__init__.py -> build/lib.macosx-10.8-x86_64-2.7/pymol/opengl
3159:info:destroot running build_ext
3160:info:destroot building 'pymol._cmd' extension
3161:info:destroot creating build/temp.macosx-10.8-x86_64-2.7
3162:info:destroot creating build/temp.macosx-10.8-x86_64-2.7/ov
3163:info:destroot creating build/temp.macosx-10.8-x86_64-2.7/ov/src
3164:info:destroot creating build/temp.macosx-10.8-x86_64-2.7/layer0
3165:info:destroot creating build/temp.macosx-10.8-x86_64-2.7/layer1
3166:info:destroot creating build/temp.macosx-10.8-x86_64-2.7/layer2
3167:info:destroot creating build/temp.macosx-10.8-x86_64-2.7/layer3
3168:info:destroot creating build/temp.macosx-10.8-x86_64-2.7/layer4
3169:info:destroot creating build/temp.macosx-10.8-x86_64-2.7/layer5
3170:info:destroot creating build/temp.macosx-10.8-x86_64-2.7/modules
3171:info:destroot creating build/temp.macosx-10.8-x86_64-2.7/modules/cealign
3172:info:destroot creating build/temp.macosx-10.8-x86_64-2.7/modules/cealign/src
3173:info:destroot creating build/temp.macosx-10.8-x86_64-2.7/build
3174:info:destroot creating build/temp.macosx-10.8-x86_64-2.7/build/generated
3175:info:destroot creating build/temp.macosx-10.8-x86_64-2.7/contrib
3176:info:destroot creating build/temp.macosx-10.8-x86_64-2.7/contrib/uiuc
3177:info:destroot creating build/temp.macosx-10.8-x86_64-2.7/contrib/uiuc/plugins
3178:info:destroot creating build/temp.macosx-10.8-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin
3179:info:destroot creating build/temp.macosx-10.8-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src
3180:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/ov_utility.cpp -o build/temp.macosx-10.8-x86_64-2.7/ov/src/ov_utility.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3181:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVOneToOne.cpp -o build/temp.macosx-10.8-x86_64-2.7/ov/src/OVOneToOne.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3182:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Err.cpp -o build/temp.macosx-10.8-x86_64-2.7/layer0/Err.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3183:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Match.cpp -o build/temp.macosx-10.8-x86_64-2.7/layer0/Match.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3184:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Parse.cpp -o build/temp.macosx-10.8-x86_64-2.7/layer0/Parse.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3185:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Tetsurf.cpp -o build/temp.macosx-10.8-x86_64-2.7/layer0/Tetsurf.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3186:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/COLLADA.cpp -o build/temp.macosx-10.8-x86_64-2.7/layer1/COLLADA.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3187:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Vector.cpp -o build/temp.macosx-10.8-x86_64-2.7/layer0/Vector.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3188:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVContext.cpp -o build/temp.macosx-10.8-x86_64-2.7/ov/src/OVContext.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3189:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Pixmap.cpp -o build/temp.macosx-10.8-x86_64-2.7/layer0/Pixmap.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3190:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVHeap.cpp -o build/temp.macosx-10.8-x86_64-2.7/ov/src/OVHeap.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3191:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVRandom.cpp -o build/temp.macosx-10.8-x86_64-2.7/ov/src/OVRandom.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3192:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVHeapArray.cpp -o build/temp.macosx-10.8-x86_64-2.7/ov/src/OVHeapArray.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3193:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Matrix.cpp -o build/temp.macosx-10.8-x86_64-2.7/layer0/Matrix.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3194:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Feedback.cpp -o build/temp.macosx-10.8-x86_64-2.7/layer0/Feedback.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3195:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Queue.cpp -o build/temp.macosx-10.8-x86_64-2.7/layer0/Queue.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3196:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVLexicon.cpp -o build/temp.macosx-10.8-x86_64-2.7/ov/src/OVLexicon.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3197:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Block.cpp -o build/temp.macosx-10.8-x86_64-2.7/layer0/Block.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3198:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Raw.cpp -o build/temp.macosx-10.8-x86_64-2.7/layer0/Raw.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3199:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVOneToAny.cpp -o build/temp.macosx-10.8-x86_64-2.7/ov/src/OVOneToAny.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3200:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Field.cpp -o build/temp.macosx-10.8-x86_64-2.7/layer0/Field.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3201:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/ShaderMgr.cpp -o build/temp.macosx-10.8-x86_64-2.7/layer0/ShaderMgr.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3202:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/FontGLUT8x13.cpp -o build/temp.macosx-10.8-x86_64-2.7/layer1/FontGLUT8x13.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3203:info:destroot In file included from layer0/Tetsurf.cpp:30:
3204:info:destroot In file included from layer1/P.h:22:
3205:info:destroot layer2/ObjectMolecule.h:89:8: error: no type named 'shared_ptr' in namespace 'std'
3206:info:destroot   std::shared_ptr<cif_file> m_ciffile;
3207:info:destroot   ~~~~~^
3208:info:destroot layer2/ObjectMolecule.h:89:18: error: expected member name or ';' after declaration specifiers
3209:info:destroot   std::shared_ptr<cif_file> m_ciffile;
3210:info:destroot   ~~~~~~~~~~~~~~~^
3211:info:destroot 2 errors generated.
3212:info:destroot /usr/bin/clang++ -std=c++0x -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/opt/local/include/libxml2 -I/usr/include -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Movie.cpp -o build/temp.macosx-10.8-x86_64-2.7/layer1/Movie.o -Wno-narrowing -Werror=implicit-function-declaration -Werror=declaration-after-statement -Wno-write-strings -Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math -funroll-loops -O3 -g -fcommon
3213:info:destroot error: command '/usr/bin/clang++' failed with exit status 1
3214:info:destroot In file included from layer0/Block.cpp:24:
3215:info:destroot In file included from layer1/CGO.h:25:
3216:info:destroot In file included from layer2/ObjectGadgetRamp.h:27:
3217:info:destroot layer2/ObjectMolecule.h:89:8: error: no type named 'shared_ptr' in namespace 'std'
3218:info:destroot   std::shared_ptr<cif_file> m_ciffile;
3219:info:destroot   ~~~~~^
3220:info:destroot layer2/ObjectMolecule.h:89:18: error: expected member name or ';' after declaration specifiers
3221:info:destroot   std::shared_ptr<cif_file> m_ciffile;
3222:info:destroot   ~~~~~~~~~~~~~~~^
3223:info:destroot 2 errors generated.
3224:info:destroot In file included from layer1/Movie.cpp:26:
3225:info:destroot In file included from layer3/Executive.h:24:
3226:info:destroot layer2/ObjectMolecule.h:89:8: error: no type named 'shared_ptr' in namespace 'std'
3227:info:destroot   std::shared_ptr<cif_file> m_ciffile;
3228:info:destroot   ~~~~~^
3229:info:destroot layer2/ObjectMolecule.h:89:18: error: expected member name or ';' after declaration specifiers
3230:info:destroot   std::shared_ptr<cif_file> m_ciffile;
3231:info:destroot   ~~~~~~~~~~~~~~~^
3232:info:destroot 2 errors generated.
3233:info:destroot Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg install --prefix=/opt/local/Library/Frameworks/Python.framework/Versions/2.7 --root=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot
3234:info:destroot Exit code: 1
3235:error:destroot org.macports.destroot for port pymol returned: command execution failed
3236:debug:destroot Error code: CHILDSTATUS 58482 1
3237:debug:destroot Backtrace: command execution failed
3238    while executing
3239"system -nice 0 $fullcmdstring"
3240    ("eval" body line 1)
3241    invoked from within
3242"eval system $notty $nice \$fullcmdstring"
3243    invoked from within
3244"command_exec destroot"
3245    (procedure "portdestroot::destroot_main" line 2)
3246    invoked from within
3247"portdestroot::destroot_main org.macports.destroot"
3248    ("eval" body line 1)
3249    invoked from within
3250"eval $procedure $targetname"
3251:info:destroot Warning: targets not executed for pymol: org.macports.activate org.macports.destroot org.macports.install
3252:notice:destroot Please see the log file for port pymol for details:
3253    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/main.log