Ticket #54321: main.log

File main.log, 45.2 KB (added by pedrotildes, 7 years ago)
Line 
1version:1
2:debug:main epoch: in tree: 3 installed: 3
3:debug:main netcdf 4.4.1_3 exists in the ports tree
4:debug:main netcdf 4.4.1_3 +dap+netcdf4 is the latest installed
5:debug:main netcdf 4.4.1_3 +dap+netcdf4 is active
6:debug:main Merging existing variants '+dap+netcdf4' into variants
7:debug:main new fully merged portvariants: netcdf4 + dap +
8:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/netcdf
9:debug:main OS darwin/16.6.0 (Mac OS X 10.12) arch i386
10:debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
11:debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
12:debug:main Sourcing PortGroup mpi 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl
13:debug:main Sourcing PortGroup github 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/github-1.0.tcl
14:debug:main Re-registering default for configure.dir
15:debug:main Re-registering default for configure.pre_args
16:debug:main Re-registering default for build.dir
17:debug:main Re-registering default for destroot.target
18:debug:main Sourcing PortGroup cmake 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/cmake-1.0.tcl
19:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
20:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
21:debug:main universal variant already exists, so not adding the default one
22:debug:main Executing variant netcdf4 provides netcdf4
23:debug:main Executing variant dap provides dap
24:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
25:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
26:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
27:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
28:debug:main No need to upgrade! netcdf 4.4.1_3 >= netcdf 4.4.1_3
29:debug:main epoch: in tree: 0 installed: 0
30:debug:main hdf5-18 1.8.18_0 exists in the ports tree
31:debug:main hdf5-18 1.8.18_0 +cxx+hl is the latest installed
32:debug:main hdf5-18 1.8.18_0 +cxx+hl is active
33:debug:main Merging existing variants '+cxx+hl' into variants
34:debug:main new fully merged portvariants: hl + cxx +
35:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/hdf5-18
36:debug:main OS darwin/16.6.0 (Mac OS X 10.12) arch i386
37:debug:main Sourcing PortGroup conflicts_build 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/conflicts_build-1.0.tcl
38:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
39:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
40:debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
41:debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
42:debug:main Sourcing PortGroup mpi 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl
43:debug:main universal variant already exists, so not adding the default one
44:debug:main Executing variant hl provides hl
45:debug:main Executing variant cxx provides cxx
46:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
47:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
48:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
49:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
50:debug:main No need to upgrade! hdf5-18 1.8.18_0 >= hdf5-18 1.8.18_0
51:debug:main epoch: in tree: 0 installed: 0
52:debug:main zlib 1.2.11_0 exists in the ports tree
53:debug:main zlib 1.2.11_0 +universal is the latest installed
54:debug:main zlib 1.2.11_0 +universal is active
55:debug:main Merging existing variants '+universal' into variants
56:debug:main new fully merged portvariants: universal +
57:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib
58:debug:main OS darwin/16.6.0 (Mac OS X 10.12) arch i386
59:debug:main Sourcing PortGroup xcodeversion 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl
60:debug:main adding the default universal variant
61:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
62:debug:main Executing variant universal provides universal
63:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
64:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
65:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
66:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
67:debug:main No need to upgrade! zlib 1.2.11_0 >= zlib 1.2.11_0
68:debug:main epoch: in tree: 0 installed: 0
69:debug:main curl 7.54.0_0 exists in the ports tree
70:debug:main curl 7.54.0_0 +ssl is the latest installed
71:debug:main curl 7.54.0_0 +ssl is active
72:debug:main Merging existing variants '+ssl' into variants
73:debug:main new fully merged portvariants: ssl +
74:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/net/curl
75:debug:main OS darwin/16.6.0 (Mac OS X 10.12) arch i386
76:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
77:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
78:debug:main universal variant already exists, so not adding the default one
79:debug:main Executing variant ssl provides ssl
80:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
81:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
82:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
83:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
84:debug:main No need to upgrade! curl 7.54.0_0 >= curl 7.54.0_0
85:debug:main epoch: in tree: 1 installed: 1
86:debug:main openssl 1.0.2l_0 exists in the ports tree
87:debug:main openssl 1.0.2l_0 +universal is the latest installed
88:debug:main openssl 1.0.2l_0 +universal is active
89:debug:main Merging existing variants '+universal' into variants
90:debug:main new fully merged portvariants: universal +
91:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/openssl
92:debug:main OS darwin/16.6.0 (Mac OS X 10.12) arch i386
93:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
94:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
95:debug:main universal variant already exists, so not adding the default one
96:debug:main Executing variant universal provides universal
97:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
98:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
99:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
100:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
101:debug:main No need to upgrade! openssl 1.0.2l_0 >= openssl 1.0.2l_0
102:debug:main epoch: in tree: 0 installed: 0
103:debug:main curl-ca-bundle 7.54.0_0 exists in the ports tree
104:debug:main curl-ca-bundle 7.54.0_0  is the latest installed
105:debug:main curl-ca-bundle 7.54.0_0  is active
106:debug:main Merging existing variants '' into variants
107:debug:main new fully merged portvariants:
108:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/net/curl
109:debug:main OS darwin/16.6.0 (Mac OS X 10.12) arch i386
110:debug:main universal_variant is false, so not adding the default universal variant
111:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
112:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
113:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
114:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
115:debug:main No need to upgrade! curl-ca-bundle 7.54.0_0 >= curl-ca-bundle 7.54.0_0
116:debug:main epoch: in tree: 0 installed: 0
117:debug:main hdf5 1.10.1_0 exists in the ports tree
118:debug:main hdf5 1.10.1_0 +cxx+hl is the latest installed
119:debug:main hdf5 1.10.1_0 +cxx+hl is active
120:debug:main Merging existing variants '+cxx+hl' into variants
121:debug:main new fully merged portvariants: hl + cxx +
122:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/hdf5
123:debug:main OS darwin/16.6.0 (Mac OS X 10.12) arch i386
124:debug:main Sourcing PortGroup conflicts_build 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/conflicts_build-1.0.tcl
125:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
126:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
127:debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
128:debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
129:debug:main Sourcing PortGroup mpi 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl
130:debug:main universal variant already exists, so not adding the default one
131:debug:main Executing variant hl provides hl
132:debug:main Executing variant cxx provides cxx
133:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
134:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
135:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
136:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
137:debug:main No need to upgrade! hdf5 1.10.1_0 >= hdf5 1.10.1_0
138:debug:main epoch: in tree: 0 installed: 0
139:debug:main udunits2 2.2.25_0 exists in the ports tree
140:debug:main udunits2 2.2.25_0  is the latest installed
141:debug:main udunits2 2.2.25_0  is active
142:debug:main Merging existing variants '' into variants
143:debug:main new fully merged portvariants:
144:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/udunits2
145:debug:main OS darwin/16.6.0 (Mac OS X 10.12) arch i386
146:debug:main Sourcing PortGroup github 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/github-1.0.tcl
147:debug:main Re-registering default for configure.dir
148:debug:main Re-registering default for configure.pre_args
149:debug:main Re-registering default for build.dir
150:debug:main Re-registering default for destroot.target
151:debug:main Sourcing PortGroup cmake 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/cmake-1.0.tcl
152:debug:main adding the default universal variant
153:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
154:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
155:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
156:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
157:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
158:debug:main No need to upgrade! udunits2 2.2.25_0 >= udunits2 2.2.25_0
159:debug:main epoch: in tree: 0 installed: 0
160:debug:main expat 2.2.0_0 exists in the ports tree
161:debug:main expat 2.2.0_0 +universal is the latest installed
162:debug:main expat 2.2.0_0 +universal is active
163:debug:main Merging existing variants '+universal' into variants
164:debug:main new fully merged portvariants: universal +
165:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat
166:debug:main OS darwin/16.6.0 (Mac OS X 10.12) arch i386
167:debug:main adding the default universal variant
168:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
169:debug:main Executing variant universal provides universal
170:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
171:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
172:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
173:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
174:debug:main No need to upgrade! expat 2.2.0_0 >= expat 2.2.0_0
175:debug:main epoch: in tree: 0 installed: 0
176:debug:main cunit 2.1-3_1 exists in the ports tree
177:debug:main cunit 2.1-3_1  is the latest installed
178:debug:main cunit 2.1-3_1  is active
179:debug:main Merging existing variants '' into variants
180:debug:main new fully merged portvariants:
181:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cunit
182:debug:main OS darwin/16.6.0 (Mac OS X 10.12) arch i386
183:debug:main adding the default universal variant
184:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
185:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
186:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
187:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
188:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
189:debug:main No need to upgrade! cunit 2.1-3_1 >= cunit 2.1-3_1
190:debug:main epoch: in tree: 0 installed: 0
191:debug:main ncurses 6.0-20170520_0 exists in the ports tree
192:debug:main ncurses 6.0-20170520_0 +universal is the latest installed
193:debug:main ncurses 6.0-20170520_0 +universal is active
194:debug:main Merging existing variants '+universal' into variants
195:debug:main new fully merged portvariants: universal +
196:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses
197:debug:main OS darwin/16.6.0 (Mac OS X 10.12) arch i386
198:debug:main adding the default universal variant
199:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
200:debug:main Executing variant universal provides universal
201:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
202:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
203:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
204:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
205:debug:main No need to upgrade! ncurses 6.0-20170520_0 >= ncurses 6.0-20170520_0
206:debug:main epoch: in tree: 0 installed: 0
207:debug:main proj 4.9.3_0 exists in the ports tree
208:debug:main proj 4.9.3_0  is the latest installed
209:debug:main proj 4.9.3_0  is active
210:debug:main Merging existing variants '' into variants
211:debug:main new fully merged portvariants:
212:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/gis/proj
213:debug:main OS darwin/16.6.0 (Mac OS X 10.12) arch i386
214:debug:main adding the default universal variant
215:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
216:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
217:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
218:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
219:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
220:debug:main No need to upgrade! proj 4.9.3_0 >= proj 4.9.3_0
221:debug:main epoch: in tree: 0 installed: 0
222:debug:main fftw-3 3.3.5_0 exists in the ports tree
223:debug:main fftw-3 3.3.5_0 +universal is the latest installed
224:debug:main fftw-3 3.3.5_0 +universal is active
225:debug:main Merging existing variants '+universal' into variants
226:debug:main new fully merged portvariants: universal +
227:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/fftw-3
228:debug:main OS darwin/16.6.0 (Mac OS X 10.12) arch i386
229:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
230:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
231:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
232:debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
233:debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
234:debug:main Sourcing PortGroup mpi 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl
235:debug:main compiler clang 802.0.42 not blacklisted because it doesn't match {clang <= 211.10.1}
236:debug:main universal variant already exists, so not adding the default one
237:debug:main Executing variant universal provides universal
238:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
239:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
240:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
241:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
242:debug:main No need to upgrade! fftw-3 3.3.5_0 >= fftw-3 3.3.5_0
243:msg:main --->  Computing dependencies for cdo:info:main .:debug:main cdo has no conflicts
244:debug:main Searching for dependency: netcdf
245:debug:main Found Dependency: receipt exists for netcdf
246:debug:main Searching for dependency: hdf5
247:debug:main Found Dependency: receipt exists for hdf5
248:debug:main Searching for dependency: curl
249:debug:main Found Dependency: receipt exists for curl
250:debug:main Searching for dependency: udunits2
251:debug:main Found Dependency: receipt exists for udunits2
252:debug:main Searching for dependency: proj
253:debug:main Found Dependency: receipt exists for proj
254:debug:main Searching for dependency: fftw-3
255:debug:main Found Dependency: receipt exists for fftw-3
256:debug:main Executing org.macports.main (cdo)
257:debug:main dropping privileges: euid changed to 502, egid changed to 501.
258:debug:archivefetch archivefetch phase started at Thu Jun 15 15:38:32 WEST 2017
259:msg:archivefetch --->  Fetching archive for cdo
260:debug:archivefetch Executing proc-pre-org.macports.archivefetch-archivefetch-0
261:debug:archivefetch Active variants check for archivefetch-type install considers depends_lib depends_run: netcdf hdf5 curl udunits2 proj fftw-3
262:debug:archivefetch Executing org.macports.archivefetch (cdo)
263:debug:archivefetch euid/egid changed to: 0/0
264:debug:archivefetch chowned /opt/local/var/macports/incoming to macports
265:debug:archivefetch euid/egid changed to: 502/501
266:info:archivefetch --->  cdo-1.8.2_0.darwin_16.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
267:msg:archivefetch --->  Attempting to fetch cdo-1.8.2_0.darwin_16.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/cdo
268:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
269:msg:archivefetch --->  Attempting to fetch cdo-1.8.2_0.darwin_16.x86_64.tbz2 from http://lil.fr.packages.macports.org/cdo
270:debug:archivefetch Fetching archive failed: Operation too slow. Less than 1024 bytes/sec transferred the last 60 seconds
271:msg:archivefetch --->  Attempting to fetch cdo-1.8.2_0.darwin_16.x86_64.tbz2 from https://packages.macports.org/cdo
272:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
273:debug:archivefetch Privilege de-escalation not attempted as not running as root.
274:debug:fetch fetch phase started at Thu Jun 15 15:39:32 WEST 2017
275:notice:fetch --->  Fetching distfiles for cdo
276:debug:fetch Executing proc-pre-org.macports.fetch-fetch-0
277:debug:fetch compilers.enforce_c list:
278:debug:fetch compilers.enforce_fortran list:
279:debug:fetch compilers.enforce_some_fortran list:
280:debug:fetch Executing proc-pre-org.macports.fetch-fetch-1
281:debug:fetch Executing proc-pre-org.macports.fetch-fetch-2
282:debug:fetch mpi.enforce_variant list: hdf5
283:debug:fetch hdf5 is installed with the following variants: +cxx+hl
284:debug:fetch   required: , forbidden:
285:debug:fetch   accepted
286:debug:fetch hdf5 is installed with the following variants: +cxx+hl
287:debug:fetch   required: mpich, forbidden:
288:debug:fetch   rejected, because required variant mpich is missing
289:debug:fetch hdf5 is installed with the following variants: +cxx+hl
290:debug:fetch   required: mpich_devel, forbidden:
291:debug:fetch   rejected, because required variant mpich_devel is missing
292:debug:fetch hdf5 is installed with the following variants: +cxx+hl
293:debug:fetch   required: openmpi, forbidden:
294:debug:fetch   rejected, because required variant openmpi is missing
295:debug:fetch hdf5 is installed with the following variants: +cxx+hl
296:debug:fetch   required: openmpi_devel, forbidden:
297:debug:fetch   rejected, because required variant openmpi_devel is missing
298:debug:fetch compilers.enforce_c list: hdf5
299:debug:fetch hdf5 is installed with the following variants: +cxx+hl
300:debug:fetch   required: , forbidden:
301:debug:fetch   accepted
302:debug:fetch hdf5 is installed with the following variants: +cxx+hl
303:debug:fetch   required: gcc44, forbidden:
304:debug:fetch   rejected, because required variant gcc44 is missing
305:debug:fetch hdf5 is installed with the following variants: +cxx+hl
306:debug:fetch   required: gcc45, forbidden:
307:debug:fetch   rejected, because required variant gcc45 is missing
308:debug:fetch hdf5 is installed with the following variants: +cxx+hl
309:debug:fetch   required: gcc46, forbidden:
310:debug:fetch   rejected, because required variant gcc46 is missing
311:debug:fetch hdf5 is installed with the following variants: +cxx+hl
312:debug:fetch   required: gcc47, forbidden:
313:debug:fetch   rejected, because required variant gcc47 is missing
314:debug:fetch hdf5 is installed with the following variants: +cxx+hl
315:debug:fetch   required: gcc48, forbidden:
316:debug:fetch   rejected, because required variant gcc48 is missing
317:debug:fetch hdf5 is installed with the following variants: +cxx+hl
318:debug:fetch   required: gcc49, forbidden:
319:debug:fetch   rejected, because required variant gcc49 is missing
320:debug:fetch hdf5 is installed with the following variants: +cxx+hl
321:debug:fetch   required: gcc5, forbidden:
322:debug:fetch   rejected, because required variant gcc5 is missing
323:debug:fetch hdf5 is installed with the following variants: +cxx+hl
324:debug:fetch   required: gcc6, forbidden:
325:debug:fetch   rejected, because required variant gcc6 is missing
326:debug:fetch hdf5 is installed with the following variants: +cxx+hl
327:debug:fetch   required: gcc7, forbidden:
328:debug:fetch   rejected, because required variant gcc7 is missing
329:debug:fetch hdf5 is installed with the following variants: +cxx+hl
330:debug:fetch   required: llvm, forbidden:
331:debug:fetch   rejected, because required variant llvm is missing
332:debug:fetch Executing org.macports.fetch (cdo)
333:debug:fetch Privilege de-escalation not attempted as not running as root.
334:debug:checksum checksum phase started at Thu Jun 15 15:39:32 WEST 2017
335:notice:checksum --->  Verifying checksums for cdo
336:debug:checksum Executing org.macports.checksum (cdo)
337:info:checksum --->  Checksumming cdo-1.8.2.tar.gz
338:debug:checksum Calculated (rmd160) is 2dd427216bd80753329bd7b1ba096de204ebb5a6
339:debug:checksum Correct (rmd160) checksum for cdo-1.8.2.tar.gz
340:debug:checksum Calculated (sha256) is 6ca6c1263af2237737728ac937a275f8aa27680507636a6b6320f347c69a369a
341:debug:checksum Correct (sha256) checksum for cdo-1.8.2.tar.gz
342:debug:checksum Privilege de-escalation not attempted as not running as root.
343:debug:extract extract phase started at Thu Jun 15 15:39:32 WEST 2017
344:notice:extract --->  Extracting cdo
345:debug:extract Executing org.macports.extract (cdo)
346:info:extract --->  Extracting cdo-1.8.2.tar.gz
347:debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/cdo/cdo-1.8.2.tar.gz'
348:debug:extract Environment:
349:debug:extract CC_PRINT_OPTIONS='YES'
350:debug:extract CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work/.CC_PRINT_OPTIONS'
351:debug:extract CPATH='/opt/local/include'
352:debug:extract LIBRARY_PATH='/opt/local/lib'
353:debug:extract MACOSX_DEPLOYMENT_TARGET='10.12'
354:info:extract Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/cdo/cdo-1.8.2.tar.gz' | /usr/bin/tar -xf -
355:debug:extract system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/cdo/cdo-1.8.2.tar.gz' | /usr/bin/tar -xf -
356:debug:extract euid/egid changed to: 0/0
357:debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work to macports
358:debug:extract euid/egid changed to: 502/501
359:debug:extract Privilege de-escalation not attempted as not running as root.
360:debug:patch patch phase started at Thu Jun 15 15:39:33 WEST 2017
361:debug:patch Executing org.macports.patch (cdo)
362:debug:patch Privilege de-escalation not attempted as not running as root.
363:debug:configure configure phase started at Thu Jun 15 15:39:33 WEST 2017
364:notice:configure --->  Configuring cdo
365:debug:configure Preferred compilers: clang macports-clang-3.9 macports-clang-3.8 macports-clang-3.7
366:debug:configure Using compiler 'Xcode Clang'
367:debug:configure Executing proc-pre-org.macports.configure-configure-0
368:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: netcdf hdf5 curl udunits2 proj fftw-3
369:debug:configure Executing org.macports.configure (cdo)
370:debug:configure Environment:
371:debug:configure CC='/usr/bin/clang'
372:debug:configure CC_PRINT_OPTIONS='YES'
373:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work/.CC_PRINT_OPTIONS'
374:debug:configure CFLAGS='-pipe -Os -arch x86_64'
375:debug:configure CPATH='/opt/local/include'
376:debug:configure CPPFLAGS='-I/opt/local/include -I/opt/local/include/udunits2'
377:debug:configure CXX='/usr/bin/clang++'
378:debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++ -arch x86_64'
379:debug:configure F77FLAGS='-m64'
380:debug:configure F90FLAGS='-pipe -Os -m64'
381:debug:configure FCFLAGS='-pipe -Os -m64'
382:debug:configure FFLAGS='-pipe -Os'
383:debug:configure INSTALL='/usr/bin/install -c'
384:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -lhdf5 -arch x86_64'
385:debug:configure LIBRARY_PATH='/opt/local/lib'
386:debug:configure MACOSX_DEPLOYMENT_TARGET='10.12'
387:debug:configure OBJC='/usr/bin/clang'
388:debug:configure OBJCFLAGS='-pipe -Os -arch x86_64'
389:debug:configure OBJCXX='/usr/bin/clang++'
390:debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++ -arch x86_64'
391:info:configure Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work/cdo-1.8.2" && ./configure --prefix=/opt/local --with-netcdf=/opt/local --disable-dependency-tracking --disable-openmp --with-proj=/opt/local --with-hdf5=/opt/local --with-udunits2=/opt/local --with-fftw3 --with-curl=/opt/local --with-zlib=/opt/local
392:debug:configure system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work/cdo-1.8.2" && ./configure --prefix=/opt/local --with-netcdf=/opt/local --disable-dependency-tracking --disable-openmp --with-proj=/opt/local --with-hdf5=/opt/local --with-udunits2=/opt/local --with-fftw3 --with-curl=/opt/local --with-zlib=/opt/local
393:info:configure checking build system type... x86_64-apple-darwin16.6.0
394:info:configure checking host system type... x86_64-apple-darwin16.6.0
395:info:configure checking for a BSD-compatible install... /usr/bin/install -c
396:info:configure checking whether build environment is sane... yes
397:info:configure checking for a thread-safe mkdir -p... config/install-sh -c -d
398:info:configure checking for gawk... gawk
399:info:configure checking whether make sets $(MAKE)... yes
400:info:configure checking whether make supports nested variables... yes
401:info:configure checking whether to enable maintainer-specific portions of Makefiles... no
402:info:configure checking for style of include used by make... GNU
403:info:configure checking for gcc... /usr/bin/clang
404:info:configure checking whether the C compiler works... yes
405:info:configure checking for C compiler default output file name... a.out
406:info:configure checking for suffix of executables...
407:info:configure checking whether we are cross compiling... no
408:info:configure checking for suffix of object files... o
409:info:configure checking whether we are using the GNU C compiler... yes
410:info:configure checking whether /usr/bin/clang accepts -g... yes
411:info:configure checking for /usr/bin/clang option to accept ISO C89... none needed
412:info:configure checking whether /usr/bin/clang understands -c and -o together... yes
413:info:configure checking dependency style of /usr/bin/clang... none
414:info:configure checking for ar... ar
415:info:configure checking the archiver (ar) interface... ar
416:info:configure configure: setting up libtool
417:info:configure checking how to print strings... printf
418:info:configure checking for a sed that does not truncate output... /opt/local/bin/gsed
419:info:configure checking for grep that handles long lines and -e... /usr/bin/grep
420:info:configure checking for egrep... /usr/bin/grep -E
421:info:configure checking for fgrep... /usr/bin/grep -F
422:info:configure checking for ld used by /usr/bin/clang... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
423:info:configure checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
424:info:configure checking for BSD- or MS-compatible name lister (nm)... /opt/local/bin/nm -B
425:info:configure checking the name lister (/opt/local/bin/nm -B) interface... BSD nm
426:info:configure checking whether ln -s works... yes
427:info:configure checking the maximum length of command line arguments... 196608
428:info:configure checking whether the shell understands some XSI constructs... yes
429:info:configure checking whether the shell understands "+="... yes
430:info:configure checking how to convert x86_64-apple-darwin16.6.0 file names to x86_64-apple-darwin16.6.0 format... func_convert_file_noop
431:info:configure checking how to convert x86_64-apple-darwin16.6.0 file names to toolchain format... func_convert_file_noop
432:info:configure checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r
433:info:configure checking for objdump... objdump
434:info:configure checking how to recognize dependent libraries... pass_all
435:info:configure checking for dlltool... no
436:info:configure checking how to associate runtime and link libraries... printf %s\n
437:info:configure checking for archiver @FILE support... no
438:info:configure checking for strip... strip
439:info:configure checking for ranlib... ranlib
440:info:configure checking command to parse /opt/local/bin/nm -B output from /usr/bin/clang object... ok
441:info:configure checking for sysroot... no
442:info:configure checking for mt... no
443:info:configure checking if : is a manifest tool... no
444:info:configure checking for dsymutil... dsymutil
445:info:configure checking for nmedit... nmedit
446:info:configure checking for lipo... lipo
447:info:configure checking for otool... otool
448:info:configure checking for otool64... no
449:info:configure checking for -single_module linker flag... yes
450:info:configure checking for -exported_symbols_list linker flag... yes
451:info:configure checking for -force_load linker flag... yes
452:info:configure checking how to run the C preprocessor... /usr/bin/clang -E
453:info:configure checking for ANSI C header files... yes
454:info:configure checking for sys/types.h... yes
455:info:configure checking for sys/stat.h... yes
456:info:configure checking for stdlib.h... yes
457:info:configure checking for string.h... yes
458:info:configure checking for memory.h... yes
459:info:configure checking for strings.h... yes
460:info:configure checking for inttypes.h... yes
461:info:configure checking for stdint.h... yes
462:info:configure checking for unistd.h... yes
463:info:configure checking for dlfcn.h... yes
464:info:configure checking for objdir... .libs
465:info:configure checking if /usr/bin/clang supports -fno-rtti -fno-exceptions... yes
466:info:configure checking for /usr/bin/clang option to produce PIC... -fno-common -DPIC
467:info:configure checking if /usr/bin/clang PIC flag -fno-common -DPIC works... yes
468:info:configure checking if /usr/bin/clang static flag -static works... no
469:info:configure checking if /usr/bin/clang supports -c -o file.o... yes
470:info:configure checking if /usr/bin/clang supports -c -o file.o... (cached) yes
471:info:configure checking whether the /usr/bin/clang linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
472:info:configure checking dynamic linker characteristics... darwin16.6.0 dyld
473:info:configure checking how to hardcode library paths into programs... immediate
474:info:configure checking whether stripping libraries is possible... yes
475:info:configure checking if libtool supports shared libraries... yes
476:info:configure checking whether to build shared libraries... yes
477:info:configure checking whether to build static libraries... yes
478:info:configure checking for bash... /bin/sh
479:info:configure checking for gcc... (cached) /usr/bin/clang
480:info:configure checking for g++... /usr/bin/clang++
481:info:configure checking for /usr/bin/clang option to accept ISO C99... none needed
482:info:configure checking for C/C++ restrict keyword... __restrict
483:info:configure checking for ar... (cached) ar
484:info:configure checking for ld... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
485:info:configure checking for nm... /opt/local/bin/nm -B
486:info:configure checking for ar... (cached) ar
487:info:configure checking for as... as
488:info:configure checking for dlltool... false
489:info:configure checking for objdump... (cached) objdump
490:info:configure checking for strip... (cached) strip
491:info:configure checking for ranlib... (cached) ranlib
492:info:configure checking whether we are using the GNU C++ compiler... yes
493:info:configure checking whether /usr/bin/clang++ accepts -g... yes
494:info:configure checking dependency style of /usr/bin/clang++... none
495:info:configure checking how to run the C++ preprocessor... /usr/bin/clang++ -E
496:info:configure checking for ld used by /usr/bin/clang++... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
497:info:configure checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
498:info:configure checking whether the /usr/bin/clang++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
499:info:configure checking for /usr/bin/clang++ option to produce PIC... -fno-common -DPIC
500:info:configure checking if /usr/bin/clang++ PIC flag -fno-common -DPIC works... yes
501:info:configure checking if /usr/bin/clang++ static flag -static works... no
502:info:configure checking if /usr/bin/clang++ supports -c -o file.o... yes
503:info:configure checking if /usr/bin/clang++ supports -c -o file.o... (cached) yes
504:info:configure checking whether the /usr/bin/clang++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
505:info:configure checking dynamic linker characteristics... darwin16.6.0 dyld
506:info:configure checking how to hardcode library paths into programs... immediate
507:info:configure checking for special C compiler options needed for large files... no
508:info:configure checking for _FILE_OFFSET_BITS value needed for large files... no
509:info:configure checking for stdlib.h... (cached) yes
510:info:configure checking for unistd.h... (cached) yes
511:info:configure checking for sys/param.h... yes
512:info:configure checking for getpagesize... yes
513:info:configure checking for working mmap... yes
514:info:configure checking for malloc in -lmalloc... no
515:info:configure checking for struct stat.st_blksize... yes
516:info:configure checking sys/resource.h usability... yes
517:info:configure checking sys/resource.h presence... yes
518:info:configure checking for sys/resource.h... yes
519:info:configure checking sys/times.h usability... yes
520:info:configure checking sys/times.h presence... yes
521:info:configure checking for sys/times.h... yes
522:info:configure checking malloc.h usability... no
523:info:configure checking malloc.h presence... no
524:info:configure checking for malloc.h... no
525:info:configure checking glob.h usability... yes
526:info:configure checking glob.h presence... yes
527:info:configure checking for glob.h... yes
528:info:configure checking fnmatch.h usability... yes
529:info:configure checking fnmatch.h presence... yes
530:info:configure checking for fnmatch.h... yes
531:info:configure checking wordexp.h usability... yes
532:info:configure checking wordexp.h presence... yes
533:info:configure checking for wordexp.h... yes
534:info:configure checking execinfo.h usability... yes
535:info:configure checking execinfo.h presence... yes
536:info:configure checking for execinfo.h... yes
537:info:configure checking for mallinfo... no
538:info:configure checking for backtrace... yes
539:info:configure checking for getrlimit... yes
540:info:configure checking for gethostname... yes
541:info:configure checking for floor in -lm... yes
542:info:configure checking whether isnan is declared... yes
543:info:configure checking for sqrtl... yes
544:info:configure checking for feenableexcept... no
545:info:configure checking for fenv_t.__control... yes
546:info:configure checking for fenv_t.__mxcsr... yes
547:info:configure checking for DATA support...
548:info:configure checking if compiler needs -Werror to reject unknown flags... yes
549:info:configure checking whether pthreads work with -pthread... yes
550:info:configure checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
551:info:configure checking if more special flags are required for pthreads... -D_THREAD_SAFE
552:info:configure checking for PTHREAD_PRIO_INHERIT... yes
553:info:configure CC:/usr/bin/clang CFLAGS:-pipe -Os -arch x86_64  -D_THREAD_SAFE -pthread LIBS: -lm
554:info:configure checking for szlib library... suppressed
555:info:configure checking hdf5.h usability... yes
556:info:configure checking hdf5.h presence... yes
557:info:configure checking for hdf5.h... yes
558:info:configure checking for library containing H5Fopen... none required
559:info:configure checking for library containing H5DSis_scale... -lhdf5_hl
560:info:configure checking netcdf.h usability... yes
561:info:configure checking netcdf.h presence... yes
562:info:configure checking for netcdf.h... yes
563:info:configure checking for library containing nc_open... -lnetcdf
564:info:configure checking nc-config script... checking for nc-config... /opt/local/bin/nc-config
565:info:configure checking netcdf's OpenDAP support... yes
566:info:configure checking netcdf's nc2 support... yes
567:info:configure checking netcdf's nc4 support... yes
568:info:configure checking netcdf's nc4/hdf5 support... yes
569:info:configure checking for library containing H5TS_mutex_lock... no
570:info:configure checking udunits2.h usability... yes
571:info:configure checking udunits2.h presence... yes
572:info:configure checking for udunits2.h... yes
573:info:configure checking udunits2/udunits2.h usability... yes
574:info:configure checking udunits2/udunits2.h presence... yes
575:info:configure checking for udunits2/udunits2.h... yes
576:info:configure checking for library containing ut_parse... -ludunits2
577:info:configure checking for the CMOR library... suppressed
578:info:configure checking for the GRIB_API library... suppressed
579:info:configure checking for GRIB support... yes
580:info:configure checking for CGRIBEX support... yes
581:info:configure checking for SERVICE support... yes
582:info:configure checking for EXTRA support... yes
583:info:configure checking for IEG support... yes
584:info:configure checking for FFTW3 support... checking fftw3.h usability... yes
585:info:configure checking fftw3.h presence... yes
586:info:configure checking for fftw3.h... yes
587:info:configure checking for library containing fftw_cleanup... -lfftw3
588:info:configure checking proj_api.h usability... yes
589:info:configure checking proj_api.h presence... yes
590:info:configure checking for proj_api.h... yes
591:info:configure checking for library containing pj_init... -lproj
592:info:configure checking curl/curl.h usability... yes
593:info:configure checking curl/curl.h presence... yes
594:info:configure checking for curl/curl.h... yes
595:info:configure checking for library containing curl_global_init... -lcurl
596:info:configure checking for MAGICS library... suppressed
597:info:configure checking for XML2 library... suppressed
598:info:configure checking for build a separate CDI library and link CDO to it... no
599:info:configure checking for building an additional static CDO binary... no
600:info:configure checking for HIRLAM extensions... no
601:info:configure checking if x86/amd64 assembler speaks SSE4.2... yes
602:info:configure checking if x86/amd64 assembler speaks AVX... yes
603:info:configure checking if x86/amd64 assembler speaks AVX2... yes
604:info:configure no
605:info:configure checking for gawk... (cached) gawk
606:info:configure checking that generated files are newer than configure... done
607:info:configure configure: creating ./config.status
608:info:configure config.status: creating test/File.test
609:info:configure dyld: Library not loaded: /opt/local/lib/libreadline.6.dylib
610:info:configure   Referenced from: /opt/local/bin/gawk
611:info:configure   Reason: image not found
612:info:configure sed: stdout: Broken pipe
613:info:configure ./config.status: line 1405: 80339 Done(1)                 eval sed \"\$ac_sed_extra\" "$ac_file_inputs"
614:info:configure      80340 Abort trap: 6           | $AWK -f "$ac_tmp/subs.awk" > $ac_tmp/out
615:info:configure config.status: error: could not create test/File.test
616:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work/cdo-1.8.2" && ./configure --prefix=/opt/local --with-netcdf=/opt/local --disable-dependency-tracking --disable-openmp --with-proj=/opt/local --with-hdf5=/opt/local --with-udunits2=/opt/local --with-fftw3 --with-curl=/opt/local --with-zlib=/opt/local
617:info:configure Exit code: 1
618:error:configure Failed to configure cdo, consult /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work/cdo-1.8.2/config.log
619:error:configure Failed to configure cdo: configure failure: command execution failed
620:debug:configure Error code: NONE
621:debug:configure Backtrace: configure failure: command execution failed
622:debug:configure     while executing
623:debug:configure "$procedure $targetname"
624:error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/main.log for details.