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Ticket #62513: Failed_to_build_ncbi_tools_main.log

File Failed_to_build_ncbi_tools_main.log, 200.6 KB (added by seanhemmingsen, 3 years ago)

Line
1	version:1
2	:debug:sysinfo macOS 11.2 (darwin/20.3.0) arch arm
3	:debug:sysinfo MacPorts 2.6.4
4	:debug:sysinfo Xcode none
5	:debug:sysinfo SDK 11.2
6	:debug:sysinfo MACOSX_DEPLOYMENT_TARGET: 11.2
7	:debug:main ncbi_tools has no conflicts
8	:debug:main Executing org.macports.main (ncbi_tools)
9	:debug:main dropping privileges: euid changed to 504, egid changed to 501.
10	:debug:archivefetch archivefetch phase started at Sun Mar 21 20:06:39 CST 2021
11	:msg:archivefetch ---> Fetching archive for ncbi_tools
12	:debug:archivefetch Executing org.macports.archivefetch (ncbi_tools)
13	:debug:archivefetch euid/egid changed to: 0/0
14	:debug:archivefetch chowned /opt/local/var/macports/incoming to macports
15	:debug:archivefetch euid/egid changed to: 504/501
16	:info:archivefetch ---> ncbi_tools-20080302_0.darwin_20.arm64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
17	:msg:archivefetch ---> Attempting to fetch ncbi_tools-20080302_0.darwin_20.arm64.tbz2 from https://ywg.ca.packages.macports.org/mirror/macports/packages/ncbi_tools
18	:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
19	:msg:archivefetch ---> Attempting to fetch ncbi_tools-20080302_0.darwin_20.arm64.tbz2 from https://mse.uk.packages.macports.org/ncbi_tools
20	:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
21	:msg:archivefetch ---> Attempting to fetch ncbi_tools-20080302_0.darwin_20.arm64.tbz2 from https://cph.dk.packages.macports.org/ncbi_tools
22	:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
23	:debug:archivefetch Privilege de-escalation not attempted as not running as root.
24	:debug:fetch fetch phase started at Sun Mar 21 20:06:44 CST 2021
25	:notice:fetch ---> Fetching distfiles for ncbi_tools
26	:debug:fetch Executing org.macports.fetch (ncbi_tools)
27	:debug:fetch Privilege de-escalation not attempted as not running as root.
28	:debug:checksum checksum phase started at Sun Mar 21 20:06:44 CST 2021
29	:notice:checksum ---> Verifying checksums for ncbi_tools
30	:debug:checksum Executing org.macports.checksum (ncbi_tools)
31	:info:checksum ---> Checksumming ncbi.tar.gz
32	:debug:checksum Calculated (md5) is f8de9d7264aed7de1d87d2185df2e07c
33	:debug:checksum Correct (md5) checksum for ncbi.tar.gz
34	:debug:checksum Privilege de-escalation not attempted as not running as root.
35	:debug:extract extract phase started at Sun Mar 21 20:06:45 CST 2021
36	:notice:extract ---> Extracting ncbi_tools
37	:debug:extract Extracting to subdirectory worksrcdir
38	:debug:extract Executing org.macports.extract (ncbi_tools)
39	:info:extract ---> Extracting ncbi.tar.gz
40	:debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/ncbi_tools/20080302/ncbi.tar.gz'
41	:debug:extract Environment:
42	:debug:extract CC_PRINT_OPTIONS='YES'
43	:debug:extract CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/.CC_PRINT_OPTIONS'
44	:debug:extract CPATH='/opt/local/include'
45	:debug:extract DEVELOPER_DIR='/Library/Developer/CommandLineTools'
46	:debug:extract LIBRARY_PATH='/opt/local/lib'
47	:debug:extract MACOSX_DEPLOYMENT_TARGET='11.2'
48	:debug:extract SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk'
49	:info:extract Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/ncbi_tools/20080302/ncbi.tar.gz' \| /usr/bin/tar -xf -
50	:debug:extract system: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/ncbi_tools/20080302/ncbi.tar.gz' \| /usr/bin/tar -xf -
51	:debug:extract euid/egid changed to: 0/0
52	:debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302 to macports
53	:debug:extract euid/egid changed to: 504/501
54	:debug:extract Privilege de-escalation not attempted as not running as root.
55	:debug:patch patch phase started at Sun Mar 21 20:06:45 CST 2021
56	:debug:patch Executing org.macports.patch (ncbi_tools)
57	:notice:patch ---> Applying patches to ncbi_tools
58	:info:patch ---> Applying darwin.ncbi.mk.diff
59	:debug:patch Environment:
60	:debug:patch CC_PRINT_OPTIONS='YES'
61	:debug:patch CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/.CC_PRINT_OPTIONS'
62	:debug:patch CPATH='/opt/local/include'
63	:debug:patch DEVELOPER_DIR='/Library/Developer/CommandLineTools'
64	:debug:patch LIBRARY_PATH='/opt/local/lib'
65	:debug:patch MACOSX_DEPLOYMENT_TARGET='11.2'
66	:debug:patch SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk'
67	:info:patch Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/science/ncbi_tools/files/darwin.ncbi.mk.diff'
68	:debug:patch system: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/science/ncbi_tools/files/darwin.ncbi.mk.diff'
69	:info:patch patching file ncbi/platform/darwin.ncbi.mk
70	:info:patch ---> Applying c-toolkit-no-carbon.patch
71	:debug:patch Environment:
72	:debug:patch CC_PRINT_OPTIONS='YES'
73	:debug:patch CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/.CC_PRINT_OPTIONS'
74	:debug:patch CPATH='/opt/local/include'
75	:debug:patch DEVELOPER_DIR='/Library/Developer/CommandLineTools'
76	:debug:patch LIBRARY_PATH='/opt/local/lib'
77	:debug:patch MACOSX_DEPLOYMENT_TARGET='11.2'
78	:debug:patch SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk'
79	:info:patch Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/science/ncbi_tools/files/c-toolkit-no-carbon.patch'
80	:debug:patch system: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/science/ncbi_tools/files/c-toolkit-no-carbon.patch'
81	:info:patch patching file ncbi/corelib/ncbienv.c
82	:info:patch Hunk #1 succeeded at 1932 (offset -6 lines).
83	:info:patch Hunk #2 succeeded at 2047 (offset -6 lines).
84	:info:patch Hunk #3 succeeded at 2240 (offset -4 lines).
85	:info:patch Hunk #4 succeeded at 2419 (offset -5 lines).
86	:info:patch patching file ncbi/corelib/ncbiwin.h
87	:info:patch patching file ncbi/make/makedis.csh
88	:info:patch Hunk #1 succeeded at 235 (offset -5 lines).
89	:debug:patch Privilege de-escalation not attempted as not running as root.
90	:debug:configure configure phase started at Sun Mar 21 20:06:45 CST 2021
91	:notice:configure ---> Configuring ncbi_tools
92	:debug:configure Preferred compilers: clang macports-clang-11
93	:debug:configure Using compiler 'Xcode Clang'
94	:debug:configure Executing org.macports.configure (ncbi_tools)
95	:debug:configure Privilege de-escalation not attempted as not running as root.
96	:debug:build build phase started at Sun Mar 21 20:06:45 CST 2021
97	:notice:build ---> Building ncbi_tools
98	:debug:build Executing org.macports.build (ncbi_tools)
99	:debug:build port disallows a parallel build
100	:debug:build Environment:
101	:debug:build CC_PRINT_OPTIONS='YES'
102	:debug:build CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/.CC_PRINT_OPTIONS'
103	:debug:build CPATH='/opt/local/include'
104	:debug:build DEVELOPER_DIR='/Library/Developer/CommandLineTools'
105	:debug:build LIBRARY_PATH='/opt/local/lib'
106	:debug:build MACOSX_DEPLOYMENT_TARGET='11.2'
107	:debug:build SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk'
108	:info:build Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302" && './ncbi/make/makedis.csh'
109	:debug:build system: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302" && './ncbi/make/makedis.csh'
110	:info:build platform is darwin
111	:info:build Darwin NRC-023669 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:06:51 PST 2021; root:xnu-7195.81.3~1/RELEASE_ARM64_T8101 arm64
112	:info:build Disabling assert().
113	:info:build BLAST version is 2.2.18
114	:info:build make CFLAGS1="-DNDEBUG -O2 -c " LDFLAGS1="-framework CoreServices -O2" OTHERLIBS="-lc" SHELL="/bin/sh" LCL="dwn" RAN="ranlib" AR="ar" CC="cc -pipe" all
115	:info:build chmod -R ug+rw,o+r . ../include
116	:info:build ./ln-if-absent ../corelib/tsprintf.h ../include
117	:info:build ./ln-if-absent ../corelib/gifgen.h ../include
118	:info:build ./ln-if-absent ../corelib/ncbi*.h ../include
119	:info:build ./ln-if-absent ../corelib/tree*.h ../include
120	:info:build ./ln-if-absent ../corelib/regex.h ../include
121	:info:build ./ln-if-absent ../corelib/matrix.h ../include
122	:info:build ./ln-if-absent ../corelib/binary.h ../include
123	:info:build ./ln-if-absent ../corelib/morefile/*.h ../include
124	:info:build ./ln-if-absent ../corelib/morefile/*.c .
125	:info:build ./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include
126	:info:build ./ln-if-absent ../corelib/ncbilcl.dwn ../include/ncbilcl.h
127	:info:build ./ln-if-absent ../corelib/*.c .
128	:info:build ./ln-if-absent ../corelib/core*.h .
129	:info:build ./ln-if-absent ../asnlib/*.h .
130	:info:build mv asn.h ../include
131	:info:build ./ln-if-absent ../asnlib/*.c .
132	:info:build ./ln-if-absent ../connect/*.c .
133	:info:build ./ln-if-absent ../connect/ncbi_ansi_ext.h .
134	:info:build ./ln-if-absent ../connect/ncbi_assert.h .
135	:info:build ./ln-if-absent ../connect/ncbi_priv.h .
136	:info:build ./ln-if-absent ../connect/ncbi_comm.h .
137	:info:build ./ln-if-absent ../connect/ncbi_config.h .
138	:info:build ./ln-if-absent ../connect/ncbi_lbsm.h .
139	:info:build make: [copy] Error 1 (ignored)
140	:info:build ./ln-if-absent ../connect/ncbi_lbsm_ipc.h .
141	:info:build make: [copy] Error 1 (ignored)
142	:info:build ./ln-if-absent ../connect/ncbi_host_infop.h .
143	:info:build ./ln-if-absent ../connect/ncbi_server_infop.h .
144	:info:build ./ln-if-absent ../connect/ncbi_servicep.h .
145	:info:build ./ln-if-absent ../connect/ncbi_dispd.h .
146	:info:build ./ln-if-absent ../connect/ncbi_lbsmd.h .
147	:info:build ./ln-if-absent ../connect/ncbi_local.h .
148	:info:build ./ln-if-absent ../connect/ncbi_lb.h .
149	:info:build ./ln-if-absent ../connect/*.h ../include
150	:info:build mkdir ../include/connect
151	:info:build chmod ug+rw,o+r ../include/connect
152	:info:build rm ../include/ncbi_*.h ../include/connect_export.h
153	:info:build cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect
154	:info:build ./ln-if-absent ../util/tables/*.c .
155	:info:build mkdir -p ../include/util/tables
156	:info:build cp -fp ../util/tables/*.h ../include/util/tables
157	:info:build ./ln-if-absent ../util/creaders/*.c .
158	:info:build mkdir -p ../include/util/creaders
159	:info:build cp -fp ../util/creaders/*.h ../include/util/creaders
160	:info:build ./ln-if-absent ../ctools/*.c .
161	:info:build ./ln-if-absent ../ctools/*.h .
162	:info:build mkdir ../include/ctools
163	:info:build chmod ug+rw,o+r ../include/ctools
164	:info:build cp -fp ../ctools/*.h ../include/ctools
165	:info:build ./ln-if-absent ../object/*.c .
166	:info:build ./ln-if-absent ../object/*.h ../include
167	:info:build ./ln-if-absent ../access/*.c .
168	:info:build ./ln-if-absent ../access/*.h ../include
169	:info:build ./ln-if-absent ../asnstat/*.h ../include
170	:info:build ./ln-if-absent ../api/*.h ../include
171	:info:build ./ln-if-absent ../api/*.c .
172	:info:build ./ln-if-absent ../cdromlib/*.h ../include
173	:info:build ./ln-if-absent ../cdromlib/*.c .
174	:info:build ./ln-if-absent ../vibrant/*.h ../include
175	:info:build ./ln-if-absent ../vibrant/*.c .
176	:info:build ./ln-if-absent ../desktop/*.h ../include
177	:info:build ./ln-if-absent ../desktop/*.c .
178	:info:build ./ln-if-absent ../biostruc/*.h ../include
179	:info:build ./ln-if-absent ../biostruc/*.c .
180	:info:build ./ln-if-absent ../biostruc/cdd/*.h ../include
181	:info:build ./ln-if-absent ../biostruc/cdd/*.c .
182	:info:build ./ln-if-absent ../biostruc/cn3d/*.h ../include
183	:info:build ./ln-if-absent ../biostruc/cn3d/*.c .
184	:info:build ./ln-if-absent ../tools/*.h ../include
185	:info:build ./ln-if-absent ../tools/*.c .
186	:info:build ./ln-if-absent ../cn3d/*.h ../include
187	:info:build ./ln-if-absent ../cn3d/*.c .
188	:info:build ./ln-if-absent ../gif/*.c .
189	:info:build ./ln-if-absent ../gif/*.h ../include
190	:info:build ./ln-if-absent ../ddv/*.h ../include
191	:info:build ./ln-if-absent ../ddv/*.c .
192	:info:build ./ln-if-absent ../regexp/*.c .
193	:info:build ./ln-if-absent ../regexp/*.h ../include
194	:info:build ./ln-if-absent ../internal/compr/*.c .
195	:info:build set: No match.
196	:info:build make: [copy] Error 1 (ignored)
197	:info:build ./ln-if-absent ../internal/compr/*.h ../include
198	:info:build set: No match.
199	:info:build make: [copy] Error 1 (ignored)
200	:info:build ./ln-if-absent ../internal/libindx/*.c .
201	:info:build set: No match.
202	:info:build make: [copy] Error 1 (ignored)
203	:info:build ./ln-if-absent ../internal/libindx/*.h ../include
204	:info:build set: No match.
205	:info:build make: [copy] Error 1 (ignored)
206	:info:build ./ln-if-absent ../internal/libpars/*.c .
207	:info:build set: No match.
208	:info:build make: [copy] Error 1 (ignored)
209	:info:build ./ln-if-absent ../internal/libpars/*.h ../include
210	:info:build set: No match.
211	:info:build make: [copy] Error 1 (ignored)
212	:info:build ./ln-if-absent ../internal/ideogram/*.c .
213	:info:build set: No match.
214	:info:build make: [copy] Error 1 (ignored)
215	:info:build ./ln-if-absent ../internal/ideogram/*.dat .
216	:info:build set: No match.
217	:info:build make: [copy] Error 1 (ignored)
218	:info:build ./ln-if-absent ../internal/ideogram/ideochr*.h ../include
219	:info:build set: No match.
220	:info:build make: [copy] Error 1 (ignored)
221	:info:build ./ln-if-absent ../internal/ideogram/ideoorgs.h .
222	:info:build make: [copy] Error 1 (ignored)
223	:info:build ./ln-if-absent ../internal/ccap/*.c .
224	:info:build set: No match.
225	:info:build make: [copy] Error 1 (ignored)
226	:info:build ./ln-if-absent ../internal/ccap/*.dat .
227	:info:build set: No match.
228	:info:build make: [copy] Error 1 (ignored)
229	:info:build ./ln-if-absent ../internal/ccap/*.h ../include
230	:info:build set: No match.
231	:info:build make: [copy] Error 1 (ignored)
232	:info:build ./ln-if-absent ncbidraw.c ncbidrwg.c
233	:info:build ./ln-if-absent ncbithr.c ncbithrs.c
234	:info:build ./ln-if-absent ../network/nsclilib/*.h ../include
235	:info:build ./ln-if-absent ../network/blast3/client/*.h ../include
236	:info:build ./ln-if-absent ../network/id1arch/*.h ../include
237	:info:build ./ln-if-absent ../network/id2arch/*.h ../include
238	:info:build mkdir -p ../include/algo/blast/core
239	:info:build ./ln-if-absent ../algo/blast/core/*.c .
240	:info:build ./ln-if-absent ../algo/blast/core/*.h .
241	:info:build cp -fp ../algo/blast/core/*.h ../include/algo/blast/core
242	:info:build mkdir -p ../include/algo/blast/composition_adjustment
243	:info:build ./ln-if-absent ../algo/blast/composition_adjustment/*.c .
244	:info:build ./ln-if-absent ../algo/blast/composition_adjustment/*.h ../include
245	:info:build cp -fp ../algo/blast/composition_adjustment/*.h \
246	:info:build ../include/algo/blast/composition_adjustment
247	:info:build mkdir -p ../include/algo/blast/api
248	:info:build ./ln-if-absent ../algo/blast/api/*.c .
249	:info:build cp -fp ../algo/blast/api/*.h ../include/algo/blast/api
250	:info:build chmod -R ug+rw,o+r .
251	:info:build echo Waiting...go
252	:info:build Waiting...go
253	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbithr.c
254	:info:build cp -p ncbithr.o ../lib
255	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbimain.c
256	:info:build ncbimain.c:81:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
257	:info:build main(int argc, char *argv[])
258	:info:build ^
259	:info:build 1 warning generated.
260	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbibs.c
261	:info:build cc -pipe -DNDEBUG -O2 -c -I../include wwwutils.c
262	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbierr.c
263	:info:build ncbierr.c:952:31: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size]
264	:info:build strncat(path,file,sizeof(path));
265	:info:build ^~~~~~~~~~~~
266	:info:build ncbierr.c:952:31: note: change the argument to be the free space in the destination buffer minus the terminating null byte
267	:info:build strncat(path,file,sizeof(path));
268	:info:build ^~~~~~~~~~~~
269	:info:build sizeof(path) - strlen(path) - 1
270	:info:build ncbierr.c:1377:13: warning: comparison of array 'info->logfile' not equal to a null pointer is always true [-Wtautological-pointer-compare]
271	:info:build if (info->logfile != NULL && *info->logfile == '\0')
272	:info:build ~~~~~~^~~~~~~ ~~~~
273	:info:build 2 warnings generated.
274	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbienv.c
275	:info:build ncbienv.c:2008:11: warning: 'FSPathMakeRef' is deprecated: first deprecated in macOS 10.8 [-Wdeprecated-declarations]
276	:info:build err = FSPathMakeRef ((unsigned char *) aPath, &contentsFRef, &isDirectory);
277	:info:build ^
278	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:4115:18: note: 'FSPathMakeRef' has been explicitly marked deprecated here
279	:info:build extern OSStatus FSPathMakeRef(const UInt8 path, FSRef ref, Boolean *isDirectory) __OSX_AVAILABLE_BUT_DEPRECATED(__MAC_10_0, __MAC_10_8, __IPHONE_NA, __IPHONE_NA);
280	:info:build ^
281	:info:build ncbienv.c:2455:10: warning: 'Gestalt' is deprecated: first deprecated in macOS 10.8 [-Wdeprecated-declarations]
282	:info:build if ( Gestalt (gestaltSystemVersion, &sysVer) == noErr) {
283	:info:build ^
284	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Gestalt.h:123:1: note: 'Gestalt' has been explicitly marked deprecated here
285	:info:build Gestalt(
286	:info:build ^
287	:info:build ncbienv.c:2455:19: warning: 'gestaltSystemVersion' is deprecated: first deprecated in macOS 10.8 - Use NSProcessInfo's operatingSystemVersion property instead. [-Wdeprecated-declarations]
288	:info:build if ( Gestalt (gestaltSystemVersion, &sysVer) == noErr) {
289	:info:build ^
290	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Gestalt.h:2081:1: note: '' has been explicitly marked deprecated here
291	:info:build enum {
292	:info:build ^
293	:info:build ncbienv.c:2474:10: warning: 'Gestalt' is deprecated: first deprecated in macOS 10.8 [-Wdeprecated-declarations]
294	:info:build if ( Gestalt (gestaltSystemVersion, &sysVer) == noErr) {
295	:info:build ^
296	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Gestalt.h:123:1: note: 'Gestalt' has been explicitly marked deprecated here
297	:info:build Gestalt(
298	:info:build ^
299	:info:build ncbienv.c:2474:19: warning: 'gestaltSystemVersion' is deprecated: first deprecated in macOS 10.8 - Use NSProcessInfo's operatingSystemVersion property instead. [-Wdeprecated-declarations]
300	:info:build if ( Gestalt (gestaltSystemVersion, &sysVer) == noErr) {
301	:info:build ^
302	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Gestalt.h:2081:1: note: '' has been explicitly marked deprecated here
303	:info:build enum {
304	:info:build ^
305	:info:build 5 warnings generated.
306	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbifile.c
307	:info:build ncbifile.c:1374:16: warning: 'tempnam' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of tempnam(3), it is highly recommended that you use mkstemp(3) instead. [-Wdeprecated-declarations]
308	:info:build filename = tempnam("/tmp", "ncbi.");
309	:info:build ^
310	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:302:1: note: 'tempnam' has been explicitly marked deprecated here
311	:info:build __deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of tempnam(3), it is highly recommended that you use mkstemp(3) instead.")
312	:info:build ^
313	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:200:48: note: expanded from macro '__deprecated_msg'
314	:info:build #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
315	:info:build ^
316	:info:build 1 warning generated.
317	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbiprop.c
318	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbimath.c
319	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbimem.c
320	:info:build ncbimem.c:551:24: warning: 'NewHandle' is deprecated: first deprecated in macOS 10.8 [-Wdeprecated-declarations]
321	:info:build hnd = (Nlm_Handle) NewHandle (size);
322	:info:build ^
323	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/MacMemory.h:451:1: note: 'NewHandle' has been explicitly marked deprecated here
324	:info:build NewHandle(Size byteCount) __OSX_AVAILABLE_BUT_DEPRECATED(__MAC_10_0, __MAC_10_8, __IPHONE_NA, __IPHONE_NA);
325	:info:build ^
326	:info:build ncbimem.c:623:5: warning: 'SetHandleSize' is deprecated: first deprecated in macOS 10.8 [-Wdeprecated-declarations]
327	:info:build SetHandleSize ((Handle)hnd, (Size)size);
328	:info:build ^
329	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/MacMemory.h:1321:1: note: 'SetHandleSize' has been explicitly marked deprecated here
330	:info:build SetHandleSize(
331	:info:build ^
332	:info:build ncbimem.c:625:9: warning: 'MemError' is deprecated: first deprecated in macOS 10.8 [-Wdeprecated-declarations]
333	:info:build if (MemError() != noErr)
334	:info:build ^
335	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/MacMemory.h:330:1: note: 'MemError' has been explicitly marked deprecated here
336	:info:build MemError(void) __OSX_AVAILABLE_BUT_DEPRECATED(__MAC_10_0, __MAC_10_8, __IPHONE_NA, __IPHONE_NA);
337	:info:build ^
338	:info:build ncbimem.c:663:9: warning: 'DisposeHandle' is deprecated: first deprecated in macOS 10.8 [-Wdeprecated-declarations]
339	:info:build DisposeHandle ((Handle) hnd);
340	:info:build ^
341	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/MacMemory.h:1278:1: note: 'DisposeHandle' has been explicitly marked deprecated here
342	:info:build DisposeHandle(Handle h) __OSX_AVAILABLE_BUT_DEPRECATED(__MAC_10_0, __MAC_10_8, __IPHONE_NA, __IPHONE_NA);
343	:info:build ^
344	:info:build ncbimem.c:704:5: warning: 'HLock' is deprecated: first deprecated in macOS 10.8 [-Wdeprecated-declarations]
345	:info:build HLock ((Handle) hnd);
346	:info:build ^
347	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/MacMemory.h:725:1: note: 'HLock' has been explicitly marked deprecated here
348	:info:build HLock(Handle h) __OSX_AVAILABLE_BUT_DEPRECATED(__MAC_10_0, __MAC_10_8, __IPHONE_NA, __IPHONE_NA);
349	:info:build ^
350	:info:build ncbimem.c:739:9: warning: 'HUnlock' is deprecated: first deprecated in macOS 10.8 [-Wdeprecated-declarations]
351	:info:build HUnlock ((Handle) hnd);
352	:info:build ^
353	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/MacMemory.h:791:1: note: 'HUnlock' has been explicitly marked deprecated here
354	:info:build HUnlock(Handle h) __OSX_AVAILABLE_BUT_DEPRECATED(__MAC_10_0, __MAC_10_8, __IPHONE_NA, __IPHONE_NA);
355	:info:build ^
356	:info:build 6 warnings generated.
357	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbimisc.c
358	:info:build ncbimisc.c:1942:27: warning: 'memset' call operates on objects of type 'struct md5context_' while the size is based on a different type 'Nlm_MD5ContextPtr' (aka 'struct md5context_ *') [-Wsizeof-pointer-memaccess]
359	:info:build memset(ctx, 0, sizeof(ctx)); /* In case it's sensitive */
360	:info:build ~~~ ^~~
361	:info:build ncbimisc.c:1942:27: note: did you mean to dereference the argument to 'sizeof' (and multiply it by the number of elements)?
362	:info:build memset(ctx, 0, sizeof(ctx)); /* In case it's sensitive */
363	:info:build ^~~
364	:info:build 1 warning generated.
365	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbimsg.c
366	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbistr.c
367	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbisgml.c
368	:info:build ncbisgml.c:191:30: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size]
369	:info:build strncat(buf,"sgmlbb.ent",sizeof buf);
370	:info:build ^~~~~~~~~~
371	:info:build ncbisgml.c:191:30: note: change the argument to be the free space in the destination buffer minus the terminating null byte
372	:info:build strncat(buf,"sgmlbb.ent",sizeof buf);
373	:info:build ^~~~~~~~~~
374	:info:build sizeof(buf) - strlen(buf) - 1
375	:info:build 1 warning generated.
376	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbitime.c
377	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbilang.c
378	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asnbufo.c
379	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asndebin.c
380	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asnenbin.c
381	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asngen.c
382	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asnio.c
383	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asnlex.c
384	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asnlext.c
385	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asnout.c
386	:info:build asnout.c:160:15: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
387	:info:build fprintf(fp, headerlines[i]);
388	:info:build ^~~~~~~~~~~~~~
389	:info:build asnout.c:160:15: note: treat the string as an argument to avoid this
390	:info:build fprintf(fp, headerlines[i]);
391	:info:build ^
392	:info:build "%s",
393	:info:build 1 warning generated.
394	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asnprint.c
395	:info:build asnprint.c:198:7: warning: expression result unused [-Wunused-value]
396	:info:build for (currmod; currmod != NULL; currmod = currmod->next)
397	:info:build ^~~~~~~
398	:info:build 1 warning generated.
399	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asntypes.c
400	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asngenob.c
401	:info:build cc -pipe -DNDEBUG -O2 -c -I../include gifgen.c
402	:info:build cc -pipe -DNDEBUG -O2 -c -I../include togif.c
403	:info:build cc -pipe -DNCBI_NOTHREADS_AVAIL -DNDEBUG -O2 -c -I../include ncbithrs.c
404	:info:build cc -pipe -DNDEBUG -O2 -c -I../include -DHAVE_STRING_H -DREGEX_MALLOC regex.c
405	:info:build regex.c:1661:17: warning: add explicit braces to avoid dangling else [-Wdangling-else]
406	:info:build else
407	:info:build ^
408	:info:build regex.c:1681:17: warning: add explicit braces to avoid dangling else [-Wdangling-else]
409	:info:build else
410	:info:build ^
411	:info:build regex.c:3764:19: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
412	:info:build PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
413	:info:build ^
414	:info:build regex.c:2417:5: note: expanded from macro 'PUSH_FAILURE_POINT'
415	:info:build PUSH_FAILURE_ITEM (lowest_active_reg); \
416	:info:build ^
417	:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
418	:info:build fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
419	:info:build ^
420	:info:build regex.c:3764:19: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
421	:info:build regex.c:2420:5: note: expanded from macro 'PUSH_FAILURE_POINT'
422	:info:build PUSH_FAILURE_ITEM (highest_active_reg); \
423	:info:build ^
424	:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
425	:info:build fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
426	:info:build ^
427	:info:build regex.c:3911:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
428	:info:build PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
429	:info:build ^
430	:info:build regex.c:2417:5: note: expanded from macro 'PUSH_FAILURE_POINT'
431	:info:build PUSH_FAILURE_ITEM (lowest_active_reg); \
432	:info:build ^
433	:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
434	:info:build fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
435	:info:build ^
436	:info:build regex.c:3911:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
437	:info:build regex.c:2420:5: note: expanded from macro 'PUSH_FAILURE_POINT'
438	:info:build PUSH_FAILURE_ITEM (highest_active_reg); \
439	:info:build ^
440	:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
441	:info:build fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
442	:info:build ^
443	:info:build regex.c:3964:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
444	:info:build PUSH_FAILURE_POINT (p + mcnt, d, -2);
445	:info:build ^
446	:info:build regex.c:2417:5: note: expanded from macro 'PUSH_FAILURE_POINT'
447	:info:build PUSH_FAILURE_ITEM (lowest_active_reg); \
448	:info:build ^
449	:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
450	:info:build fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
451	:info:build ^
452	:info:build regex.c:3964:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
453	:info:build regex.c:2420:5: note: expanded from macro 'PUSH_FAILURE_POINT'
454	:info:build PUSH_FAILURE_ITEM (highest_active_reg); \
455	:info:build ^
456	:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
457	:info:build fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
458	:info:build ^
459	:info:build regex.c:4103:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
460	:info:build PUSH_FAILURE_POINT (0, 0, -2);
461	:info:build ^
462	:info:build regex.c:2417:5: note: expanded from macro 'PUSH_FAILURE_POINT'
463	:info:build PUSH_FAILURE_ITEM (lowest_active_reg); \
464	:info:build ^
465	:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
466	:info:build fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
467	:info:build ^
468	:info:build regex.c:4103:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
469	:info:build regex.c:2420:5: note: expanded from macro 'PUSH_FAILURE_POINT'
470	:info:build PUSH_FAILURE_ITEM (highest_active_reg); \
471	:info:build ^
472	:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
473	:info:build fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
474	:info:build ^
475	:info:build regex.c:4116:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
476	:info:build PUSH_FAILURE_POINT (0, 0, -2);
477	:info:build ^
478	:info:build regex.c:2417:5: note: expanded from macro 'PUSH_FAILURE_POINT'
479	:info:build PUSH_FAILURE_ITEM (lowest_active_reg); \
480	:info:build ^
481	:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
482	:info:build fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
483	:info:build ^
484	:info:build regex.c:4116:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
485	:info:build regex.c:2420:5: note: expanded from macro 'PUSH_FAILURE_POINT'
486	:info:build PUSH_FAILURE_ITEM (highest_active_reg); \
487	:info:build ^
488	:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
489	:info:build fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
490	:info:build ^
491	:info:build 12 warnings generated.
492	:info:build cc -pipe -DNDEBUG -O2 -c -I../include tsprintf.c
493	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbiargs.c
494	:info:build cc -pipe -DNDEBUG -O2 -c -I../include tree.c
495	:info:build cc -pipe -DNDEBUG -O2 -c -I../include matrix.c
496	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_socket.c
497	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_buffer.c
498	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_types.c
499	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_core.c
500	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_core_c.c
501	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_util.c
502	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_priv.c
503	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_ansi_ext.c
504	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_connection.c
505	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_connector.c
506	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_connutil.c
507	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_file_connector.c
508	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_heapmgr.c
509	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_http_connector.c
510	:info:build ncbi_http_connector.c:1056:48: warning: adding 'int' to a string does not append to the string [-Wstring-plus-int]
511	:info:build if (strncasecmp(s++, "\nReferer: " + first, 10 - first) == 0)
512	:info:build ~~~~~~~~~~~~~~^~~~~~~
513	:info:build ncbi_http_connector.c:1056:48: note: use array indexing to silence this warning
514	:info:build if (strncasecmp(s++, "\nReferer: " + first, 10 - first) == 0)
515	:info:build ^
516	:info:build & [ ]
517	:info:build 1 warning generated.
518	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_memory_connector.c
519	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_lbsmd_stub.c
520	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_host_info.c
521	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_server_info.c
522	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_service.c
523	:info:build ncbi_service.c:629:22: warning: format specifies type 'unsigned short' but the argument has type 'int' [-Wformat]
524	:info:build SERV_CLIENT_REVISION_MAJOR, SERV_CLIENT_REVISION_MINOR);
525	:info:build ^~~~~~~~~~~~~~~~~~~~~~~~~~
526	:info:build ../include/connect/ncbi_service.h:41:37: note: expanded from macro 'SERV_CLIENT_REVISION_MAJOR'
527	:info:build #define SERV_CLIENT_REVISION_MAJOR 6
528	:info:build ^
529	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
530	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
531	:info:build ^~~~~~~~~~~
532	:info:build ncbi_service.c:619:61: note: format string is defined here
533	:info:build static const char client_revision[] = "Client-Revision: %hu.%hu\r\n";
534	:info:build ^~~
535	:info:build %d
536	:info:build ncbi_service.c:629:50: warning: format specifies type 'unsigned short' but the argument has type 'int' [-Wformat]
537	:info:build SERV_CLIENT_REVISION_MAJOR, SERV_CLIENT_REVISION_MINOR);
538	:info:build ^~~~~~~~~~~~~~~~~~~~~~~~~~
539	:info:build ../include/connect/ncbi_service.h:42:37: note: expanded from macro 'SERV_CLIENT_REVISION_MINOR'
540	:info:build #define SERV_CLIENT_REVISION_MINOR 240
541	:info:build ^~~
542	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
543	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
544	:info:build ^~~~~~~~~~~
545	:info:build ncbi_service.c:619:65: note: format string is defined here
546	:info:build static const char client_revision[] = "Client-Revision: %hu.%hu\r\n";
547	:info:build ^~~
548	:info:build %d
549	:info:build 2 warnings generated.
550	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_service_connector.c
551	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_ftp_connector.c
552	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_dispd.c
553	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_lb.c
554	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_local.c
555	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_socket_connector.c
556	:info:build cc -pipe -DNDEBUG -O2 -c -I../include urlquery.c
557	:info:build cc -pipe -DNDEBUG -O2 -c -I../include binary.c
558	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_sendmail.c
559	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asn_connection.c
560	:info:build cc -pipe -DNDEBUG -O2 -c -I../include raw_scoremat.c
561	:info:build cc -pipe -DNDEBUG -O2 -c -I../include drwnflpt.c
562	:info:build cc -pipe -DNDEBUG -O2 -c -I../include drwnfspc.c
563	:info:build cc -pipe -DNDEBUG -O2 -c -I../include drwnmfls.c
564	:info:build rm -f libncbi.a
565	:info:build ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o asn_connection.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o
566	:info:build cp -p libncbi.a ../lib
567	:info:build ranlib ../lib/libncbi.a
568	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objacces.c
569	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objalign.c
570	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objall.c
571	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objbibli.c
572	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objfeat.c
573	:info:build objfeat.c:3784:28: warning: self-comparison always evaluates to false [-Wtautological-compare]
574	:info:build \|\| onp2->mgcode != onp2->mgcode
575	:info:build ^
576	:info:build 1 warning generated.
577	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objgen.c
578	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objloc.c
579	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objmedli.c
580	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objpub.c
581	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objres.c
582	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objscoremat.c
583	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objseq.c
584	:info:build objseq.c:1454:11: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqDataPtr' (aka 'struct SeqData *') [-Wnon-literal-null-conversion]
585	:info:build return FALSE;
586	:info:build ^~~~~
587	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
588	:info:build #define FALSE ((Nlm_Boolean)0)
589	:info:build ^~~~~~~~~~~~~~~~
590	:info:build objseq.c:1458:10: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqDataPtr' (aka 'struct SeqData *') [-Wnon-literal-null-conversion]
591	:info:build return FALSE;
592	:info:build ^~~~~
593	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
594	:info:build #define FALSE ((Nlm_Boolean)0)
595	:info:build ^~~~~~~~~~~~~~~~
596	:info:build 2 warnings generated.
597	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objblock.c
598	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objcode.c
599	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objsset.c
600	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objsub.c
601	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objprt.c
602	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objfdef.c
603	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objalignloc.c
604	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objtable.c
605	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objpubme.c
606	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objmdrs.c
607	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objproj.c
608	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objgbseq.c
609	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objtseq.c
610	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objinsdseq.c
611	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objmacro.c
612	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objent2.c
613	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ent2api.c
614	:info:build cc -pipe -DNDEBUG -O2 -c -I../include pmfapi.c
615	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objtax3.c
616	:info:build cc -pipe -DNDEBUG -O2 -c -I../include tax3api.c
617	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objegkludge.c
618	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objentgene.c
619	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objmla2.c
620	:info:build cc -pipe -DNDEBUG -O2 -c -I../include mla2api.c
621	:info:build cc -pipe -DNDEBUG -O2 -c -I../include qblastapi.c
622	:info:build cc -pipe -DNDEBUG -O2 -c -I../include vecscnapi.c
623	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objmim.c
624	:info:build cc -pipe -DNDEBUG -O2 -c -I../include mimapi.c
625	:info:build cc -pipe -DNDEBUG -O2 -c -I../include cddapi.c
626	:info:build cc -pipe -DNDEBUG -O2 -c -I../include seqport.c
627	:info:build seqport.c:5420:31: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_ByteStorePtr' (aka 'struct bytestore *') [-Wnon-literal-null-conversion]
628	:info:build ByteStorePtr bysp1, bysp2 = '\0';
629	:info:build ^~~~
630	:info:build 1 warning generated.
631	:info:build cc -pipe -DNDEBUG -O2 -c -I../include sequtil.c
632	:info:build cc -pipe -DNDEBUG -O2 -c -I../include prtutil.c
633	:info:build prtutil.c:1270:36: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
634	:info:build for (wrd = str, space = 0; (*wrd == ' '); wrd++)
635	:info:build ~~~~~^~~~~~
636	:info:build prtutil.c:1270:36: note: remove extraneous parentheses around the comparison to silence this warning
637	:info:build for (wrd = str, space = 0; (*wrd == ' '); wrd++)
638	:info:build ~ ^ ~
639	:info:build prtutil.c:1270:36: note: use '=' to turn this equality comparison into an assignment
640	:info:build for (wrd = str, space = 0; (*wrd == ' '); wrd++)
641	:info:build ^~
642	:info:build =
643	:info:build 1 warning generated.
644	:info:build cc -pipe -DNDEBUG -O2 -c -I../include simple.c
645	:info:build cc -pipe -DNDEBUG -O2 -c -I../include tofasta.c
646	:info:build cc -pipe -DNDEBUG -O2 -c -I../include tofile.c
647	:info:build cc -pipe -DNDEBUG -O2 -c -I../include tomedlin.c
648	:info:build cc -pipe -DNDEBUG -O2 -c -I../include valid.c
649	:info:build valid.c:21310:26: warning: self-comparison always evaluates to false [-Wtautological-compare]
650	:info:build } else if (gip2->right < gip2->right) {
651	:info:build ^
652	:info:build 1 warning generated.
653	:info:build cc -pipe -DNDEBUG -O2 -c -I../include alignmgr.c
654	:info:build alignmgr.c:1589:19: warning: cast to 'Nlm_VoidPtr' (aka 'void *') from smaller integer type 'Nlm_Boolean' (aka 'unsigned char') [-Wint-to-void-pointer-cast]
655	:info:build sap->saip = (Pointer)AMAlignIndexFree(amaip);
656	:info:build ^
657	:info:build alignmgr.c:2270:14: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqAlignPtr' (aka 'struct seqalign *') [-Wnon-literal-null-conversion]
658	:info:build return FALSE;
659	:info:build ^~~~~
660	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
661	:info:build #define FALSE ((Nlm_Boolean)0)
662	:info:build ^~~~~~~~~~~~~~~~
663	:info:build alignmgr.c:2273:14: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqAlignPtr' (aka 'struct seqalign *') [-Wnon-literal-null-conversion]
664	:info:build return FALSE;
665	:info:build ^~~~~
666	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
667	:info:build #define FALSE ((Nlm_Boolean)0)
668	:info:build ^~~~~~~~~~~~~~~~
669	:info:build alignmgr.c:2276:14: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqAlignPtr' (aka 'struct seqalign *') [-Wnon-literal-null-conversion]
670	:info:build return FALSE;
671	:info:build ^~~~~
672	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
673	:info:build #define FALSE ((Nlm_Boolean)0)
674	:info:build ^~~~~~~~~~~~~~~~
675	:info:build alignmgr.c:6292:17: warning: expression which evaluates to zero treated as a null pointer constant of type 'AMmsmsPtr' (aka 'struct am_msms *') [-Wnon-literal-null-conversion]
676	:info:build return FALSE;
677	:info:build ^~~~~
678	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
679	:info:build #define FALSE ((Nlm_Boolean)0)
680	:info:build ^~~~~~~~~~~~~~~~
681	:info:build 5 warnings generated.
682	:info:build cc -pipe -DNDEBUG -O2 -c -I../include aliparse.c
683	:info:build aliparse.c:2092:8: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
684	:info:build static s_IsExistingId (AlignFileDataPtr fileInfoPtr,
685	:info:build ~~~~~~ ^
686	:info:build aliparse.c:2533:12: warning: expression which evaluates to zero treated as a null pointer constant of type 'AlignFileDataPtr' (aka 'AlignFileData *') [-Wnon-literal-null-conversion]
687	:info:build return FALSE;
688	:info:build ^~~~~
689	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
690	:info:build #define FALSE ((Nlm_Boolean)0)
691	:info:build ^~~~~~~~~~~~~~~~
692	:info:build aliparse.c:3161:15: warning: expression result unused [-Wunused-value]
693	:info:build for (d; d<spacer; d++)
694	:info:build ^
695	:info:build 3 warnings generated.
696	:info:build cc -pipe -DNDEBUG -O2 -c -I../include aliread.c
697	:info:build cc -pipe -DNDEBUG -O2 -c -I../include alignval.c
698	:info:build alignval.c:1197:13: warning: add explicit braces to avoid dangling else [-Wdangling-else]
699	:info:build else
700	:info:build ^
701	:info:build 1 warning generated.
702	:info:build cc -pipe -DNDEBUG -O2 -c -I../include sqnutil1.c
703	:info:build cc -pipe -DNDEBUG -O2 -c -I../include sqnutil2.c
704	:info:build sqnutil2.c:1436:30: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value]
705	:info:build offset =(Int4)abs(abs((long)strdb)-abs((long)strtmp));
706	:info:build ^
707	:info:build sqnutil2.c:1436:30: note: use function 'labs' instead
708	:info:build offset =(Int4)abs(abs((long)strdb)-abs((long)strtmp));
709	:info:build ^~~
710	:info:build labs
711	:info:build sqnutil2.c:1436:47: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value]
712	:info:build offset =(Int4)abs(abs((long)strdb)-abs((long)strtmp));
713	:info:build ^
714	:info:build sqnutil2.c:1436:47: note: use function 'labs' instead
715	:info:build offset =(Int4)abs(abs((long)strdb)-abs((long)strtmp));
716	:info:build ^~~
717	:info:build labs
718	:info:build sqnutil2.c:3312:44: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_CharPtr' (aka 'char *') [-Wnon-literal-null-conversion]
719	:info:build if (str == NULL \|\| seqid == NULL) return FALSE;
720	:info:build ^~~~~
721	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
722	:info:build #define FALSE ((Nlm_Boolean)0)
723	:info:build ^~~~~~~~~~~~~~~~
724	:info:build sqnutil2.c:4432:48: warning: implicit conversion from 'int' to 'Nlm_Char' (aka 'char') changes value from 255 to -1 [-Wconstant-conversion]
725	:info:build if (res_name == NULL \|\| sctp == NULL) return INVALID_RESIDUE;
726	:info:build ~~~~~~ ^~~~~~~~~~~~~~~
727	:info:build ../include/sequtil.h:372:25: note: expanded from macro 'INVALID_RESIDUE'
728	:info:build #define INVALID_RESIDUE 255
729	:info:build ^~~
730	:info:build sqnutil2.c:9351:26: warning: self-comparison always evaluates to false [-Wtautological-compare]
731	:info:build } else if (gip2->right < gip2->right) {
732	:info:build ^
733	:info:build 5 warnings generated.
734	:info:build cc -pipe -DNDEBUG -O2 -c -I../include sqnutil3.c
735	:info:build sqnutil3.c:6232:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
736	:info:build extern CharPtr discReportInconsistentLocusTagPrefixFmt = "%d features have locus tag prefix %s.";
737	:info:build ^
738	:info:build sqnutil3.c:6233:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
739	:info:build extern CharPtr discReportInconsistentProteinIDPrefixFmt = "%d sequences have protein ID prefix %s.";
740	:info:build ^
741	:info:build sqnutil3.c:6234:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
742	:info:build extern CharPtr discReportBadProteinIdFmt = "%d proteins have invalid IDs.";
743	:info:build ^
744	:info:build sqnutil3.c:6517:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
745	:info:build extern CharPtr discReportDuplicateLocusTagFmt = "%d genes have duplicate locus tags.";
746	:info:build ^
747	:info:build sqnutil3.c:6518:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
748	:info:build extern CharPtr discReportOneDuplicateLocusTagFmt = "%d genes have locus tag %s.";
749	:info:build ^
750	:info:build sqnutil3.c:6519:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
751	:info:build extern CharPtr discReportMissingLocusTags = "%d genes have no locus tags.";
752	:info:build ^
753	:info:build sqnutil3.c:9657:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
754	:info:build extern CharPtr discReportDuplicateProteinIDFmt = "%d coding regions have non-unique protein IDs";
755	:info:build ^
756	:info:build sqnutil3.c:9658:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
757	:info:build extern CharPtr discReportOneDuplicateProteinIDFmt = "%d coding regions have protein ID %s";
758	:info:build ^
759	:info:build sqnutil3.c:9659:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
760	:info:build extern CharPtr discReportMissingProteinIDFmt = "%d coding regions have missing protein IDs";
761	:info:build ^
762	:info:build sqnutil3.c:9660:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
763	:info:build extern CharPtr discReportDuplicateTranscriptIdFmt = "%d mRNAs have non-unique transcript IDs";
764	:info:build ^
765	:info:build sqnutil3.c:9661:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
766	:info:build extern CharPtr discReportOneDuplicateTranscriptIdFmt = "%d mRNAs have non-unique transcript ID %s";
767	:info:build ^
768	:info:build sqnutil3.c:9662:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
769	:info:build extern CharPtr discReportMissingTranscriptIDFmt = "%d mRNAs have missing transcript IDs";
770	:info:build ^
771	:info:build sqnutil3.c:10461:20: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
772	:info:build fprintf (fp, row_text);
773	:info:build ^~~~~~~~
774	:info:build sqnutil3.c:10461:20: note: treat the string as an argument to avoid this
775	:info:build fprintf (fp, row_text);
776	:info:build ^
777	:info:build "%s",
778	:info:build 13 warnings generated.
779	:info:build cc -pipe -DNDEBUG -O2 -c -I../include sqnutil4.c
780	:info:build sqnutil4.c:5664:29: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
781	:info:build sprintf (description, gene_name);
782	:info:build ^~~~~~~~~
783	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
784	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
785	:info:build ^~~~~~~~~~~
786	:info:build sqnutil4.c:5664:29: note: treat the string as an argument to avoid this
787	:info:build sprintf (description, gene_name);
788	:info:build ^
789	:info:build "%s",
790	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
791	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
792	:info:build ^
793	:info:build sqnutil4.c:6394:53: warning: expression which evaluates to zero treated as a null pointer constant of type 'DeflineFeatureRequestListPtr' (aka 'struct deflinefeaturerequestlist *') [-Wnon-literal-null-conversion]
794	:info:build expected_product_name = GetProductName (cds, bsp, FALSE);
795	:info:build ^~~~~
796	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
797	:info:build #define FALSE ((Nlm_Boolean)0)
798	:info:build ^~~~~~~~~~~~~~~~
799	:info:build sqnutil4.c:9619:37: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
800	:info:build if (new_fcp == NULL) return FALSE;
801	:info:build ^~~~~
802	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
803	:info:build #define FALSE ((Nlm_Boolean)0)
804	:info:build ^~~~~~~~~~~~~~~~
805	:info:build sqnutil4.c:9621:33: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
806	:info:build if (vnp == NULL) return FALSE;
807	:info:build ^~~~~
808	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
809	:info:build #define FALSE ((Nlm_Boolean)0)
810	:info:build ^~~~~~~~~~~~~~~~
811	:info:build 4 warnings generated.
812	:info:build cc -pipe -DNDEBUG -O2 -c -I../include subutil.c
813	:info:build subutil.c:772:38: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqLitPtr' (aka 'struct seqlit *') [-Wnon-literal-null-conversion]
814	:info:build if (delta_seq_entry == NULL) return FALSE;
815	:info:build ^~~~~
816	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
817	:info:build #define FALSE ((Nlm_Boolean)0)
818	:info:build ^~~~~~~~~~~~~~~~
819	:info:build subutil.c:773:45: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqLitPtr' (aka 'struct seqlit *') [-Wnon-literal-null-conversion]
820	:info:build if (IS_Bioseq_set(delta_seq_entry)) return FALSE;
821	:info:build ^~~~~
822	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
823	:info:build #define FALSE ((Nlm_Boolean)0)
824	:info:build ^~~~~~~~~~~~~~~~
825	:info:build subutil.c:774:53: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqLitPtr' (aka 'struct seqlit *') [-Wnon-literal-null-conversion]
826	:info:build if (delta_seq_entry->data.ptrvalue == NULL) return FALSE;
827	:info:build ^~~~~
828	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
829	:info:build #define FALSE ((Nlm_Boolean)0)
830	:info:build ^~~~~~~~~~~~~~~~
831	:info:build subutil.c:780:10: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqLitPtr' (aka 'struct seqlit *') [-Wnon-literal-null-conversion]
832	:info:build return FALSE;
833	:info:build ^~~~~
834	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
835	:info:build #define FALSE ((Nlm_Boolean)0)
836	:info:build ^~~~~~~~~~~~~~~~
837	:info:build subutil.c:3636:23: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare]
838	:info:build if (AA_for_tRNA != '\0')
839	:info:build ^~~~
840	:info:build (void *)0
841	:info:build subutil.c:4047:10: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqGraphPtr' (aka 'struct seqgraph *') [-Wnon-literal-null-conversion]
842	:info:build return FALSE;
843	:info:build ^~~~~
844	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
845	:info:build #define FALSE ((Nlm_Boolean)0)
846	:info:build ^~~~~~~~~~~~~~~~
847	:info:build 6 warnings generated.
848	:info:build cc -pipe -DNDEBUG -O2 -c -I../include edutil.c
849	:info:build edutil.c:1958:45: warning: expression which evaluates to zero treated as a null pointer constant of type 'BioseqPtr' (aka 'struct bioseq *') [-Wnon-literal-null-conversion]
850	:info:build if ((oldbsp == NULL) \|\| (from < 0)) return FALSE;
851	:info:build ^~~~~
852	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
853	:info:build #define FALSE ((Nlm_Boolean)0)
854	:info:build ^~~~~~~~~~~~~~~~
855	:info:build edutil.c:2099:47: warning: expression which evaluates to zero treated as a null pointer constant of type 'BioseqPtr' (aka 'struct bioseq *') [-Wnon-literal-null-conversion]
856	:info:build if ((sourceid == NULL) \|\| (from < 0)) return FALSE;
857	:info:build ^~~~~
858	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
859	:info:build #define FALSE ((Nlm_Boolean)0)
860	:info:build ^~~~~~~~~~~~~~~~
861	:info:build edutil.c:6557:1: warning: '/*' within block comment [-Wcomment]
862	:info:build /* This section of code deals with editing the sequence by inserting and removing characters.
863	:info:build ^
864	:info:build 3 warnings generated.
865	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asn2ff1.c
866	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asn2ff2.c
867	:info:build asn2ff2.c:1350:8: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
868	:info:build static ChoicePID(SeqIdPtr sid)
869	:info:build ~~~~~~ ^
870	:info:build 1 warning generated.
871	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asn2ff3.c
872	:info:build asn2ff3.c:3728:24: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
873	:info:build sprintf(buf, "%ld", sip->data.intvalue);
874	:info:build ~~~ ^~~~~~~~~~~~~~~~~~
875	:info:build %d
876	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
877	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
878	:info:build ^~~~~~~~~~~
879	:info:build asn2ff3.c:3771:25: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
880	:info:build sprintf(buf, "%ld", sip->data.intvalue);
881	:info:build ~~~ ^~~~~~~~~~~~~~~~~~
882	:info:build %d
883	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
884	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
885	:info:build ^~~~~~~~~~~
886	:info:build 2 warnings generated.
887	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asn2ff4.c
888	:info:build asn2ff4.c:1126:5: warning: add explicit braces to avoid dangling else [-Wdangling-else]
889	:info:build }else{
890	:info:build ^
891	:info:build asn2ff4.c:1347:8: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
892	:info:build static CmpImpFeat (ImpFeatPtr f1, ImpFeatPtr f2)
893	:info:build ~~~~~~ ^
894	:info:build asn2ff4.c:2069:26: warning: comparison of array 'gbp->accession' equal to a null pointer is always false [-Wtautological-pointer-compare]
895	:info:build if (gbp == NULL \|\| gbp->accession == NULL)
896	:info:build ~~~~~^~~~~~~~~ ~~~~
897	:info:build asn2ff4.c:2660:12: warning: address of array 'gbp->locus' will always evaluate to 'true' [-Wpointer-bool-conversion]
898	:info:build if (gbp->locus) {
899	:info:build ~~ ~~~~~^~~~~
900	:info:build asn2ff4.c:2664:12: warning: address of array 'gbp->accession' will always evaluate to 'true' [-Wpointer-bool-conversion]
901	:info:build if (gbp->accession) {
902	:info:build ~~ ~~~~~^~~~~~~~~
903	:info:build 5 warnings generated.
904	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asn2ff5.c
905	:info:build asn2ff5.c:1683:5: warning: add explicit braces to avoid dangling else [-Wdangling-else]
906	:info:build else
907	:info:build ^
908	:info:build asn2ff5.c:2124:12: warning: expression result unused [-Wunused-value]
909	:info:build temp++; *ptr_in++;
910	:info:build ^~~~~~~~~
911	:info:build asn2ff5.c:2128:10: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_CharPtr' (aka 'char *') [-Wnon-literal-null-conversion]
912	:info:build temp = '\0';
913	:info:build ^~~~
914	:info:build 3 warnings generated.
915	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asn2ff6.c
916	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asn2gnb1.c
917	:info:build asn2gnb1.c:4215:22: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
918	:info:build fprintf (fp, ffhead);
919	:info:build ^~~~~~
920	:info:build asn2gnb1.c:4215:22: note: treat the string as an argument to avoid this
921	:info:build fprintf (fp, ffhead);
922	:info:build ^
923	:info:build "%s",
924	:info:build asn2gnb1.c:4266:22: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
925	:info:build fprintf (fp, fftail);
926	:info:build ^~~~~~
927	:info:build asn2gnb1.c:4266:22: note: treat the string as an argument to avoid this
928	:info:build fprintf (fp, fftail);
929	:info:build ^
930	:info:build "%s",
931	:info:build 2 warnings generated.
932	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asn2gnb2.c
933	:info:build asn2gnb2.c:1574:18: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare]
934	:info:build while (accp != '\0' && prevp != '\0') {
935	:info:build ^~~~
936	:info:build (void *)0
937	:info:build asn2gnb2.c:1574:37: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare]
938	:info:build while (accp != '\0' && prevp != '\0') {
939	:info:build ^~~~
940	:info:build (void *)0
941	:info:build asn2gnb2.c:1599:41: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare]
942	:info:build for (ptr = acc, letters = 0; ptr != '\0' && IS_ALPHA(*ptr); ++ptr, ++letters) continue;
943	:info:build ^~~~
944	:info:build (void *)0
945	:info:build 3 warnings generated.
946	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asn2gnb3.c
947	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asn2gnb4.c
948	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asn2gnb5.c
949	:info:build cc -pipe -DNDEBUG -O2 -c -I../include asn2gnb6.c
950	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ftusrstr.c
951	:info:build cc -pipe -DNDEBUG -O2 -c -I../include gbfeat.c
952	:info:build cc -pipe -DNDEBUG -O2 -c -I../include gbftglob.c
953	:info:build cc -pipe -DNDEBUG -O2 -c -I../include gbparint.c
954	:info:build gbparint.c:2064:52: warning: for loop has empty body [-Wempty-body]
955	:info:build for (; IS_DIGIT(*current_col); current_col++) ;
956	:info:build ^
957	:info:build gbparint.c:2064:52: note: put the semicolon on a separate line to silence this warning
958	:info:build gbparint.c:2129:7: warning: add explicit braces to avoid dangling else [-Wdangling-else]
959	:info:build }else{
960	:info:build ^
961	:info:build gbparint.c:2450:52: warning: for loop has empty body [-Wempty-body]
962	:info:build for (; IS_DIGIT(*current_col); current_col++) ;
963	:info:build ^
964	:info:build gbparint.c:2450:52: note: put the semicolon on a separate line to silence this warning
965	:info:build gbparint.c:2515:7: warning: add explicit braces to avoid dangling else [-Wdangling-else]
966	:info:build }else{
967	:info:build ^
968	:info:build 4 warnings generated.
969	:info:build cc -pipe -DNDEBUG -O2 -c -I../include utilpars.c
970	:info:build cc -pipe -DNDEBUG -O2 -c -I../include utilpub.c
971	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ffprint.c
972	:info:build cc -pipe -DNDEBUG -O2 -c -I../include wprint.c
973	:info:build wprint.c:781:17: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
974	:info:build link_ff, (Int4) gi, itemID, entityID);
975	:info:build ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
976	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
977	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
978	:info:build ^~~~~~~~~~~
979	:info:build wprint.c:825:24: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
980	:info:build link_muid, (Int4) muid);
981	:info:build ~~~~~~~~~~~^~~~~~~~~~~~
982	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
983	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
984	:info:build ^~~~~~~~~~~
985	:info:build 2 warnings generated.
986	:info:build cc -pipe -DNDEBUG -O2 -c -I../include satutil.c
987	:info:build cc -pipe -DNDEBUG -O2 -c -I../include seqmgr.c
988	:info:build seqmgr.c:374:29: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqEntryPtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
989	:info:build if (smp == NULL) return FALSE;
990	:info:build ^~~~~
991	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
992	:info:build #define FALSE ((Nlm_Boolean)0)
993	:info:build ^~~~~~~~~~~~~~~~
994	:info:build seqmgr.c:3692:28: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqEntryPtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
995	:info:build if (omdp == NULL) return FALSE;
996	:info:build ^~~~~
997	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
998	:info:build #define FALSE ((Nlm_Boolean)0)
999	:info:build ^~~~~~~~~~~~~~~~
1000	:info:build seqmgr.c:5394:88: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_BoolPtr' (aka 'unsigned char *') [-Wnon-literal-null-conversion]
1001	:info:build slp = SeqLocCopyRegion (sip, loc, bsp, 0, bsp->length - 1, Seq_strand_minus, FALSE);
1002	:info:build ^~~~~
1003	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1004	:info:build #define FALSE ((Nlm_Boolean)0)
1005	:info:build ^~~~~~~~~~~~~~~~
1006	:info:build 3 warnings generated.
1007	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objmgr.c
1008	:info:build objmgr.c:1195:16: warning: result of comparison of constant 4294967295 with expression of type 'Nlm_Uint2' (aka 'unsigned short') is always true [-Wtautological-constant-out-of-range-compare]
1009	:info:build if (omp->hold < OBJMGR_MAX)
1010	:info:build ~~~~~~~~~ ^ ~~~~~~~~~~
1011	:info:build objmgr.c:3184:4: warning: format specifies type 'unsigned int' but the argument has type 'unsigned long' [-Wformat]
1012	:info:build (unsigned long)(omdp->touch));
1013	:info:build ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
1014	:info:build 2 warnings generated.
1015	:info:build cc -pipe -DNDEBUG -O2 -c -I../include gather.c
1016	:info:build cc -pipe -DNDEBUG -O2 -c -I../include accmmdbs.c
1017	:info:build cc -pipe -DNDEBUG -O2 -c -I../include acccn3ds.c
1018	:info:build cc -pipe -DNDEBUG -O2 -c -I../include lsqfetch.c
1019	:info:build cc -pipe -DNDEBUG -O2 -c -I../include findrepl.c
1020	:info:build findrepl.c:1836:16: warning: taking the absolute value of unsigned type 'unsigned long' has no effect [-Wabsolute-value]
1021	:info:build new_len += abs (StringLen (GetSpecialCharacterReplacement ((unsigned char)*cp)) - 1);
1022	:info:build ^
1023	:info:build findrepl.c:1836:16: note: remove the call to 'abs' since unsigned values cannot be negative
1024	:info:build new_len += abs (StringLen (GetSpecialCharacterReplacement ((unsigned char)*cp)) - 1);
1025	:info:build ^~~~
1026	:info:build 1 warning generated.
1027	:info:build cc -pipe -DNDEBUG -O2 -c -I../include codon.c
1028	:info:build cc -pipe -DNDEBUG -O2 -c -I../include jzcoll.c
1029	:info:build jzcoll.c:1748:11: warning: comparison of array 'csop->features' equal to a null pointer is always false [-Wtautological-pointer-compare]
1030	:info:build if(csop->features == NULL && afp->all_feature == FALSE)
1031	:info:build ~~~~~~^~~~~~~~ ~~~~
1032	:info:build 1 warning generated.
1033	:info:build cc -pipe -DNDEBUG -O2 -c -I../include jzmisc.c
1034	:info:build cc -pipe -DNDEBUG -O2 -c -I../include maputil.c
1035	:info:build maputil.c:868:10: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
1036	:info:build return FALSE;
1037	:info:build ^~~~~
1038	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1039	:info:build #define FALSE ((Nlm_Boolean)0)
1040	:info:build ^~~~~~~~~~~~~~~~
1041	:info:build 1 warning generated.
1042	:info:build cc -pipe -DNDEBUG -O2 -c -I../include mconsist.c
1043	:info:build cc -pipe -DNDEBUG -O2 -c -I../include macroapi.c
1044	:info:build macroapi.c:2159:51: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_CharPtr' (aka 'char *') [-Wnon-literal-null-conversion]
1045	:info:build if (str == NULL \|\| text_portion == NULL) return FALSE;
1046	:info:build ^~~~~
1047	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1048	:info:build #define FALSE ((Nlm_Boolean)0)
1049	:info:build ^~~~~~~~~~~~~~~~
1050	:info:build macroapi.c:5362:77: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_CharPtr' (aka 'char *') [-Wnon-literal-null-conversion]
1051	:info:build if (data == NULL \|\| field == NULL \|\| field->data.ptrvalue == NULL) return FALSE;
1052	:info:build ^~~~~
1053	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1054	:info:build #define FALSE ((Nlm_Boolean)0)
1055	:info:build ^~~~~~~~~~~~~~~~
1056	:info:build macroapi.c:8158:25: warning: format specifies type 'char *' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
1057	:info:build sprintf (buf, "%s", dbtag->tag->id);
1058	:info:build ~~ ^~~~~~~~~~~~~~
1059	:info:build %d
1060	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1061	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1062	:info:build ^~~~~~~~~~~
1063	:info:build macroapi.c:9704:12: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
1064	:info:build return FALSE;
1065	:info:build ^~~~~
1066	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1067	:info:build #define FALSE ((Nlm_Boolean)0)
1068	:info:build ^~~~~~~~~~~~~~~~
1069	:info:build macroapi.c:9710:12: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
1070	:info:build return FALSE;
1071	:info:build ^~~~~
1072	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1073	:info:build #define FALSE ((Nlm_Boolean)0)
1074	:info:build ^~~~~~~~~~~~~~~~
1075	:info:build macroapi.c:10871:38: warning: self-comparison always evaluates to false [-Wtautological-compare]
1076	:info:build } else if (vnp2->data.ptrvalue < vnp2->data.ptrvalue) {
1077	:info:build ^
1078	:info:build 6 warnings generated.
1079	:info:build cc -pipe -DNDEBUG -O2 -c -I../include salpedit.c
1080	:info:build cc -pipe -DNDEBUG -O2 -c -I../include salpstat.c
1081	:info:build salpstat.c:1945:17: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
1082	:info:build if((bsp1->mol == Seq_mol_aa))
1083	:info:build ~~~~~~~~~~^~~~~~~~~~~~~
1084	:info:build salpstat.c:1945:17: note: remove extraneous parentheses around the comparison to silence this warning
1085	:info:build if((bsp1->mol == Seq_mol_aa))
1086	:info:build ~ ^ ~
1087	:info:build salpstat.c:1945:17: note: use '=' to turn this equality comparison into an assignment
1088	:info:build if((bsp1->mol == Seq_mol_aa))
1089	:info:build ^~
1090	:info:build =
1091	:info:build salpstat.c:1949:17: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
1092	:info:build if((bsp2->mol == Seq_mol_aa))
1093	:info:build ~~~~~~~~~~^~~~~~~~~~~~~
1094	:info:build salpstat.c:1949:17: note: remove extraneous parentheses around the comparison to silence this warning
1095	:info:build if((bsp2->mol == Seq_mol_aa))
1096	:info:build ~ ^ ~
1097	:info:build salpstat.c:1949:17: note: use '=' to turn this equality comparison into an assignment
1098	:info:build if((bsp2->mol == Seq_mol_aa))
1099	:info:build ^~
1100	:info:build =
1101	:info:build 2 warnings generated.
1102	:info:build cc -pipe -DNDEBUG -O2 -c -I../include salpacc.c
1103	:info:build cc -pipe -DNDEBUG -O2 -c -I../include salprop.c
1104	:info:build salprop.c:867:52: warning: address of array 'sesp->label' will always evaluate to 'true' [-Wpointer-bool-conversion]
1105	:info:build if (af.protName==NULL && sesp->label)
1106	:info:build ~~ ~~~~~~^~~~~
1107	:info:build 1 warning generated.
1108	:info:build cc -pipe -DNDEBUG -O2 -c -I../include salsap.c
1109	:info:build cc -pipe -DNDEBUG -O2 -c -I../include salstruc.c
1110	:info:build salstruc.c:1080:21: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare]
1111	:info:build if (strptmp == '\0') break;
1112	:info:build ^~~~
1113	:info:build (void *)0
1114	:info:build salstruc.c:1854:21: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
1115	:info:build fprintf (fout, label);
1116	:info:build ^~~~~
1117	:info:build salstruc.c:1854:21: note: treat the string as an argument to avoid this
1118	:info:build fprintf (fout, label);
1119	:info:build ^
1120	:info:build "%s",
1121	:info:build salstruc.c:2319:12: warning: comparison of array 'csop->features' equal to a null pointer is always false [-Wtautological-pointer-compare]
1122	:info:build if(csop->features == NULL)
1123	:info:build ~~~~~~^~~~~~~~ ~~~~
1124	:info:build salstruc.c:2422:14: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
1125	:info:build return FALSE;
1126	:info:build ^~~~~
1127	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1128	:info:build #define FALSE ((Nlm_Boolean)0)
1129	:info:build ^~~~~~~~~~~~~~~~
1130	:info:build salstruc.c:2424:14: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
1131	:info:build return FALSE;
1132	:info:build ^~~~~
1133	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1134	:info:build #define FALSE ((Nlm_Boolean)0)
1135	:info:build ^~~~~~~~~~~~~~~~
1136	:info:build 5 warnings generated.
1137	:info:build cc -pipe -DNDEBUG -O2 -c -I../include salutil.c
1138	:info:build salutil.c:2398:12: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1139	:info:build else if (!with_prot && feat->data == NULL)
1140	:info:build ^
1141	:info:build 1 warning generated.
1142	:info:build cc -pipe -DNDEBUG -O2 -c -I../include udvseq.c
1143	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blocks.c
1144	:info:build blocks.c:1375:32: warning: expression which evaluates to zero treated as a null pointer constant of type 'SegmentPtr' (aka 'struct _segment *') [-Wnon-literal-null-conversion]
1145	:info:build minus_head1 = minus_head2 = FALSE;
1146	:info:build ^~~~~
1147	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1148	:info:build #define FALSE ((Nlm_Boolean)0)
1149	:info:build ^~~~~~~~~~~~~~~~
1150	:info:build 1 warning generated.
1151	:info:build cc -pipe -DNDEBUG -O2 -c -I../include pgppop.c
1152	:info:build pgppop.c:2997:16: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
1153	:info:build fprintf(fp,szSeq);
1154	:info:build ^~~~~
1155	:info:build pgppop.c:2997:16: note: treat the string as an argument to avoid this
1156	:info:build fprintf(fp,szSeq);
1157	:info:build ^
1158	:info:build "%s",
1159	:info:build 1 warning generated.
1160	:info:build cc -pipe -DNDEBUG -O2 -c -I../include samutil.c
1161	:info:build samutil.c:1794:13: warning: multiple unsequenced modifications to 'Index' [-Wunsequenced]
1162	:info:build Index = ++Index % DDE_STACK_SIZE;
1163	:info:build ~ ^
1164	:info:build 1 warning generated.
1165	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ddvcolor.c
1166	:info:build cc -pipe -DNDEBUG -O2 -c -I../include viewmgr.c
1167	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ddvcreate.c
1168	:info:build ddvcreate.c:493:22: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1169	:info:build while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
1170	:info:build ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1171	:info:build ddvcreate.c:493:22: note: place parentheses around the assignment to silence this warning
1172	:info:build while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
1173	:info:build ^
1174	:info:build ( )
1175	:info:build ddvcreate.c:493:22: note: use '==' to turn this assignment into an equality comparison
1176	:info:build while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
1177	:info:build ^
1178	:info:build ==
1179	:info:build ddvcreate.c:779:22: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1180	:info:build while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
1181	:info:build ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1182	:info:build ddvcreate.c:779:22: note: place parentheses around the assignment to silence this warning
1183	:info:build while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
1184	:info:build ^
1185	:info:build ( )
1186	:info:build ddvcreate.c:779:22: note: use '==' to turn this assignment into an equality comparison
1187	:info:build while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
1188	:info:build ^
1189	:info:build ==
1190	:info:build 2 warnings generated.
1191	:info:build cc -pipe -DNDEBUG -O2 -c -I../include jsavlt.c
1192	:info:build cc -pipe -DNDEBUG -O2 -c -I../include needleman.c
1193	:info:build cc -pipe -DNDEBUG -O2 -c -I../include txalign.c
1194	:info:build txalign.c:1769:179: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
1195	:info:build sprintf(checkboxBuf, "<input type=\"checkbox\" name=\"getSeqGi\" value=\"%ld\" onClick=\"synchronizeCheck(this.value, 'getSeqAlignment%ld', 'getSeqGi', this.checked)\">", sip->data.intvalue, query_number_glb);
1196	:info:build ~~~ ^~~~~~~~~~~~~~~~~~
1197	:info:build %d
1198	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1199	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1200	:info:build ^~~~~~~~~~~
1201	:info:build txalign.c:1769:199: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
1202	:info:build sprintf(checkboxBuf, "<input type=\"checkbox\" name=\"getSeqGi\" value=\"%ld\" onClick=\"synchronizeCheck(this.value, 'getSeqAlignment%ld', 'getSeqGi', this.checked)\">", sip->data.intvalue, query_number_glb);
1203	:info:build ~~~ ^~~~~~~~~~~~~~~~
1204	:info:build %d
1205	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1206	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1207	:info:build ^~~~~~~~~~~
1208	:info:build txalign.c:1770:27: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
1209	:info:build sprintf(docbuf+pos,checkboxBuf);
1210	:info:build ^~~~~~~~~~~
1211	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1212	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1213	:info:build ^~~~~~~~~~~
1214	:info:build txalign.c:1770:27: note: treat the string as an argument to avoid this
1215	:info:build sprintf(docbuf+pos,checkboxBuf);
1216	:info:build ^
1217	:info:build "%s",
1218	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1219	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1220	:info:build ^
1221	:info:build txalign.c:1776:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
1222	:info:build sprintf(docbuf+pos, HTML_buffer);
1223	:info:build ^~~~~~~~~~~
1224	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1225	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1226	:info:build ^~~~~~~~~~~
1227	:info:build txalign.c:1776:26: note: treat the string as an argument to avoid this
1228	:info:build sprintf(docbuf+pos, HTML_buffer);
1229	:info:build ^
1230	:info:build "%s",
1231	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1232	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1233	:info:build ^
1234	:info:build txalign.c:1793:65: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
1235	:info:build sprintf(docbuf+pos, HTML_buffer);
1236	:info:build ^~~~~~~~~~~
1237	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1238	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1239	:info:build ^~~~~~~~~~~
1240	:info:build txalign.c:1793:65: note: treat the string as an argument to avoid this
1241	:info:build sprintf(docbuf+pos, HTML_buffer);
1242	:info:build ^
1243	:info:build "%s",
1244	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1245	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1246	:info:build ^
1247	:info:build txalign.c:1802:65: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
1248	:info:build sprintf(docbuf+pos, HTML_buffer);
1249	:info:build ^~~~~~~~~~~
1250	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1251	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1252	:info:build ^~~~~~~~~~~
1253	:info:build txalign.c:1802:65: note: treat the string as an argument to avoid this
1254	:info:build sprintf(docbuf+pos, HTML_buffer);
1255	:info:build ^
1256	:info:build "%s",
1257	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1258	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1259	:info:build ^
1260	:info:build txalign.c:1818:152: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
1261	:info:build sprintf(checkboxBuf, "<input type=\"checkbox\" name=\"getSeqMaster\" value=\"\" onClick=\"uncheckable('getSeqAlignment%ld', 'getSeqMaster')\">", query_number_glb);
1262	:info:build ~~~ ^~~~~~~~~~~~~~~~
1263	:info:build %d
1264	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1265	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1266	:info:build ^~~~~~~~~~~
1267	:info:build txalign.c:1819:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
1268	:info:build sprintf(docbuf+pos,checkboxBuf);
1269	:info:build ^~~~~~~~~~~
1270	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1271	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1272	:info:build ^~~~~~~~~~~
1273	:info:build txalign.c:1819:26: note: treat the string as an argument to avoid this
1274	:info:build sprintf(docbuf+pos,checkboxBuf);
1275	:info:build ^
1276	:info:build "%s",
1277	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1278	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1279	:info:build ^
1280	:info:build txalign.c:2743:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1281	:info:build if (bsp = BioseqLockById(SeqLocId(ssp->loc->next))) {
1282	:info:build ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1283	:info:build txalign.c:2743:21: note: place parentheses around the assignment to silence this warning
1284	:info:build if (bsp = BioseqLockById(SeqLocId(ssp->loc->next))) {
1285	:info:build ^
1286	:info:build ( )
1287	:info:build txalign.c:2743:21: note: use '==' to turn this assignment into an equality comparison
1288	:info:build if (bsp = BioseqLockById(SeqLocId(ssp->loc->next))) {
1289	:info:build ^
1290	:info:build ==
1291	:info:build txalign.c:5011:37: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1292	:info:build if (bsp = BioseqLockById(bestid)) {
1293	:info:build ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1294	:info:build txalign.c:5011:37: note: place parentheses around the assignment to silence this warning
1295	:info:build if (bsp = BioseqLockById(bestid)) {
1296	:info:build ^
1297	:info:build ( )
1298	:info:build txalign.c:5011:37: note: use '==' to turn this assignment into an equality comparison
1299	:info:build if (bsp = BioseqLockById(bestid)) {
1300	:info:build ^
1301	:info:build ==
1302	:info:build 10 warnings generated.
1303	:info:build cc -pipe -DNDEBUG -O2 -c -I../include fdlobj.c
1304	:info:build cc -pipe -DNDEBUG -O2 -c -I../include alignmgr2.c
1305	:info:build alignmgr2.c:872:18: warning: expression result unused [-Wunused-value]
1306	:info:build for (j; j<dsp->numseg && next == -1; j++)
1307	:info:build ^
1308	:info:build alignmgr2.c:2964:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1309	:info:build if (ldelta = ABS(s->beg - beg)) {
1310	:info:build ~~~~~~~^~~~~~~~~~~~~~~~~~~
1311	:info:build alignmgr2.c:2964:18: note: place parentheses around the assignment to silence this warning
1312	:info:build if (ldelta = ABS(s->beg - beg)) {
1313	:info:build ^
1314	:info:build ( )
1315	:info:build alignmgr2.c:2964:18: note: use '==' to turn this assignment into an equality comparison
1316	:info:build if (ldelta = ABS(s->beg - beg)) {
1317	:info:build ^
1318	:info:build ==
1319	:info:build alignmgr2.c:3201:12: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1320	:info:build while (a = AlnMgr2GetNextSeqPiece(a)) {
1321	:info:build ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
1322	:info:build alignmgr2.c:3201:12: note: place parentheses around the assignment to silence this warning
1323	:info:build while (a = AlnMgr2GetNextSeqPiece(a)) {
1324	:info:build ^
1325	:info:build ( )
1326	:info:build alignmgr2.c:3201:12: note: use '==' to turn this assignment into an equality comparison
1327	:info:build while (a = AlnMgr2GetNextSeqPiece(a)) {
1328	:info:build ^
1329	:info:build ==
1330	:info:build alignmgr2.c:3203:14: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1331	:info:build while (b = AlnMgr2GetNextLimitedSeqPiece(b, a)) {
1332	:info:build ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1333	:info:build alignmgr2.c:3203:14: note: place parentheses around the assignment to silence this warning
1334	:info:build while (b = AlnMgr2GetNextLimitedSeqPiece(b, a)) {
1335	:info:build ^
1336	:info:build ( )
1337	:info:build alignmgr2.c:3203:14: note: use '==' to turn this assignment into an equality comparison
1338	:info:build while (b = AlnMgr2GetNextLimitedSeqPiece(b, a)) {
1339	:info:build ^
1340	:info:build ==
1341	:info:build alignmgr2.c:3213:12: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1342	:info:build while (A = AlnMgr2GetNextSeqPiece(A)) {
1343	:info:build ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
1344	:info:build alignmgr2.c:3213:12: note: place parentheses around the assignment to silence this warning
1345	:info:build while (A = AlnMgr2GetNextSeqPiece(A)) {
1346	:info:build ^
1347	:info:build ( )
1348	:info:build alignmgr2.c:3213:12: note: use '==' to turn this assignment into an equality comparison
1349	:info:build while (A = AlnMgr2GetNextSeqPiece(A)) {
1350	:info:build ^
1351	:info:build ==
1352	:info:build alignmgr2.c:3217:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1353	:info:build while (B = AlnMgr2GetNextLimitedSeqPiece(B, A)) {};
1354	:info:build ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1355	:info:build alignmgr2.c:3217:16: note: place parentheses around the assignment to silence this warning
1356	:info:build while (B = AlnMgr2GetNextLimitedSeqPiece(B, A)) {};
1357	:info:build ^
1358	:info:build ( )
1359	:info:build alignmgr2.c:3217:16: note: use '==' to turn this assignment into an equality comparison
1360	:info:build while (B = AlnMgr2GetNextLimitedSeqPiece(B, A)) {};
1361	:info:build ^
1362	:info:build ==
1363	:info:build alignmgr2.c:5603:22: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1364	:info:build while (more = AlnMgr2GetNextAlnBit(sap, amp))
1365	:info:build ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1366	:info:build alignmgr2.c:5603:22: note: place parentheses around the assignment to silence this warning
1367	:info:build while (more = AlnMgr2GetNextAlnBit(sap, amp))
1368	:info:build ^
1369	:info:build ( )
1370	:info:build alignmgr2.c:5603:22: note: use '==' to turn this assignment into an equality comparison
1371	:info:build while (more = AlnMgr2GetNextAlnBit(sap, amp))
1372	:info:build ^
1373	:info:build ==
1374	:info:build alignmgr2.c:5616:29: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
1375	:info:build fprintf(ofp, buf);
1376	:info:build ^~~
1377	:info:build alignmgr2.c:5616:29: note: treat the string as an argument to avoid this
1378	:info:build fprintf(ofp, buf);
1379	:info:build ^
1380	:info:build "%s",
1381	:info:build alignmgr2.c:6154:17: warning: expression which evaluates to zero treated as a null pointer constant of type 'AMInterrInfoPtr' (aka 'struct am_interrinfo *') [-Wnon-literal-null-conversion]
1382	:info:build return FALSE;
1383	:info:build ^~~~~
1384	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1385	:info:build #define FALSE ((Nlm_Boolean)0)
1386	:info:build ^~~~~~~~~~~~~~~~
1387	:info:build alignmgr2.c:6311:12: warning: expression result unused [-Wunused-value]
1388	:info:build for (i; i<interrupt->segnum; i++)
1389	:info:build ^
1390	:info:build 10 warnings generated.
1391	:info:build cc -pipe -DNDEBUG -O2 -c -I../include alnread.c
1392	:info:build alnread.c:717:36: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
1393	:info:build sprintf (eip->message, msg);
1394	:info:build ^~~
1395	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1396	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1397	:info:build ^~~~~~~~~~~
1398	:info:build alnread.c:717:36: note: treat the string as an argument to avoid this
1399	:info:build sprintf (eip->message, msg);
1400	:info:build ^
1401	:info:build "%s",
1402	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1403	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1404	:info:build ^
1405	:info:build 1 warning generated.
1406	:info:build rm -f libncbiobj.a
1407	:info:build ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o
1408	:info:build cp -p libncbiobj.a ../lib
1409	:info:build ranlib ../lib/libncbiobj.a
1410	:info:build cc -pipe -DNDEBUG -O2 -c -I../include cdentrez.c
1411	:info:build cc -pipe -DNDEBUG -O2 -c -I../include cdromlib.c
1412	:info:build cc -pipe -DNDEBUG -O2 -c -I../include cdnewlib.c
1413	:info:build cdnewlib.c:1342:12: warning: cast to 'AsnIo ' (aka 'struct asnio ') from smaller integer type 'int' [-Wint-to-pointer-cast]
1414	:info:build return (AsnIo*) CatastrophicFailure(1);
1415	:info:build ^
1416	:info:build cdnewlib.c:1937:10: warning: cast to 'long *' from smaller integer type 'int' [-Wint-to-pointer-cast]
1417	:info:build return (long*)CatastrophicFailure(1);
1418	:info:build ^
1419	:info:build cdnewlib.c:1945:10: warning: cast to 'long *' from smaller integer type 'int' [-Wint-to-pointer-cast]
1420	:info:build return (long*)CatastrophicFailure(1);
1421	:info:build ^
1422	:info:build cdnewlib.c:2117:10: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_Byte ' (aka 'unsigned char ') [-Wnon-literal-null-conversion]
1423	:info:build return FALSE;
1424	:info:build ^~~~~
1425	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1426	:info:build #define FALSE ((Nlm_Boolean)0)
1427	:info:build ^~~~~~~~~~~~~~~~
1428	:info:build cdnewlib.c:2679:48: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size]
1429	:info:build strncat(volname,cddev->volume->volume_name,sizeof volname);
1430	:info:build ^~~~~~~~~~~~~~
1431	:info:build cdnewlib.c:2679:48: note: change the argument to be the free space in the destination buffer minus the terminating null byte
1432	:info:build strncat(volname,cddev->volume->volume_name,sizeof volname);
1433	:info:build ^~~~~~~~~~~~~~
1434	:info:build sizeof(volname) - strlen(volname) - 1
1435	:info:build cdnewlib.c:2751:33: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size]
1436	:info:build strncat(fpath,cddev->inf.root,sizeof fpath);
1437	:info:build ^~~~~~~~~~~~
1438	:info:build cdnewlib.c:2751:33: note: change the argument to be the free space in the destination buffer minus the terminating null byte
1439	:info:build strncat(fpath,cddev->inf.root,sizeof fpath);
1440	:info:build ^~~~~~~~~~~~
1441	:info:build sizeof(fpath) - strlen(fpath) - 1
1442	:info:build cdnewlib.c:2769:36: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size]
1443	:info:build strncat(fpath,cddev->inf.root,sizeof fpath);
1444	:info:build ^~~~~~~~~~~~
1445	:info:build cdnewlib.c:2769:36: note: change the argument to be the free space in the destination buffer minus the terminating null byte
1446	:info:build strncat(fpath,cddev->inf.root,sizeof fpath);
1447	:info:build ^~~~~~~~~~~~
1448	:info:build sizeof(fpath) - strlen(fpath) - 1
1449	:info:build 7 warnings generated.
1450	:info:build cc -pipe -DNDEBUG -O2 -c -I../include casn.c
1451	:info:build cc -pipe -DNDEBUG -O2 -c -I../include cdconfig.c
1452	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objentr.c
1453	:info:build rm -f libncbicdr.a
1454	:info:build ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o
1455	:info:build cp -p libncbicdr.a ../lib
1456	:info:build ranlib ../lib/libncbicdr.a
1457	:info:build cc -pipe -DNDEBUG -O2 -c -I../include accentr.c
1458	:info:build cc -pipe -DNDEBUG -O2 -c -I../include accutils.c
1459	:info:build rm -f libncbiacc.a
1460	:info:build ar cru libncbiacc.a accentr.o accutils.o
1461	:info:build cp -p libncbiacc.a ../lib
1462	:info:build ranlib ../lib/libncbiacc.a
1463	:info:build cc -pipe -DNDEBUG -O2 -c -I../include corematx.c
1464	:info:build cc -pipe -DNDEBUG -O2 -c -I../include dvncode.c
1465	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objmmdb1.c
1466	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objmmdb2.c
1467	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objmmdb3.c
1468	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objcn3d.c
1469	:info:build cc -pipe -DNDEBUG -O2 -c -I../include mmdbapi.c
1470	:info:build cc -pipe -DNDEBUG -O2 -c -I../include mmdbapi1.c
1471	:info:build cc -pipe -DNDEBUG -O2 -c -I../include mmdbapi2.c
1472	:info:build mmdbapi2.c:1477:6: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1473	:info:build else
1474	:info:build ^
1475	:info:build mmdbapi2.c:1497:17: warning: if statement has empty body [-Wempty-body]
1476	:info:build if (iCoord) ; /* later eh */
1477	:info:build ^
1478	:info:build mmdbapi2.c:1497:17: note: put the semicolon on a separate line to silence this warning
1479	:info:build 2 warnings generated.
1480	:info:build cc -pipe -DNDEBUG -O2 -c -I../include mmdbapi3.c
1481	:info:build mmdbapi3.c:843:9: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1482	:info:build else if (org->taxname) sprintf(orgstring, "ORGANISM_SCIENTIFIC: %s",
1483	:info:build ^
1484	:info:build 1 warning generated.
1485	:info:build cc -pipe -DNDEBUG -O2 -c -I../include mmdbapi4.c
1486	:info:build cc -pipe -DNDEBUG -O2 -c -I../include mmdbentr.c
1487	:info:build cc -pipe -DNDEBUG -O2 -c -I../include vastsubs.c
1488	:info:build cc -pipe -DNDEBUG -O2 -c -I../include prunebsc.c
1489	:info:build prunebsc.c:559:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1490	:info:build if (vnp = ValNodeFindNext(currentbp->descr, NULL, BiomolDescr_name))
1491	:info:build ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1492	:info:build prunebsc.c:559:13: note: place parentheses around the assignment to silence this warning
1493	:info:build if (vnp = ValNodeFindNext(currentbp->descr, NULL, BiomolDescr_name))
1494	:info:build ^
1495	:info:build ( )
1496	:info:build prunebsc.c:559:13: note: use '==' to turn this assignment into an equality comparison
1497	:info:build if (vnp = ValNodeFindNext(currentbp->descr, NULL, BiomolDescr_name))
1498	:info:build ^
1499	:info:build ==
1500	:info:build prunebsc.c:574:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1501	:info:build if (vnp = ValNodeFindNext(het->descr, NULL, BiomolDescr_name))
1502	:info:build ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1503	:info:build prunebsc.c:574:13: note: place parentheses around the assignment to silence this warning
1504	:info:build if (vnp = ValNodeFindNext(het->descr, NULL, BiomolDescr_name))
1505	:info:build ^
1506	:info:build ( )
1507	:info:build prunebsc.c:574:13: note: use '==' to turn this assignment into an equality comparison
1508	:info:build if (vnp = ValNodeFindNext(het->descr, NULL, BiomolDescr_name))
1509	:info:build ^
1510	:info:build ==
1511	:info:build prunebsc.c:663:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1512	:info:build if (vnp = ValNodeFindNext(bsfsp->descr, NULL, BiostrucFeatureSetDescr_name))
1513	:info:build ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1514	:info:build prunebsc.c:663:13: note: place parentheses around the assignment to silence this warning
1515	:info:build if (vnp = ValNodeFindNext(bsfsp->descr, NULL, BiostrucFeatureSetDescr_name))
1516	:info:build ^
1517	:info:build ( )
1518	:info:build prunebsc.c:663:13: note: use '==' to turn this assignment into an equality comparison
1519	:info:build if (vnp = ValNodeFindNext(bsfsp->descr, NULL, BiostrucFeatureSetDescr_name))
1520	:info:build ^
1521	:info:build ==
1522	:info:build 3 warnings generated.
1523	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objcdd.c
1524	:info:build cc -pipe -DNDEBUG -O2 -c -I../include cddutil.c
1525	:info:build cddutil.c:1034:8: warning: address of function 'CddHasConsensus' will always evaluate to 'true' [-Wpointer-bool-conversion]
1526	:info:build if (!CddHasConsensus) return FALSE;
1527	:info:build ~^~~~~~~~~~~~~~~
1528	:info:build cddutil.c:1034:8: note: prefix with the address-of operator to silence this warning
1529	:info:build if (!CddHasConsensus) return FALSE;
1530	:info:build ^
1531	:info:build &
1532	:info:build cddutil.c:1291:24: warning: expression which evaluates to zero treated as a null pointer constant of type 'BioseqPtr' (aka 'struct bioseq *') [-Wnon-literal-null-conversion]
1533	:info:build if (from < 0) return FALSE;
1534	:info:build ^~~~~
1535	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1536	:info:build #define FALSE ((Nlm_Boolean)0)
1537	:info:build ^~~~~~~~~~~~~~~~
1538	:info:build cddutil.c:4838:17: warning: comparison of array 'ckptFileName' not equal to a null pointer is always true [-Wtautological-pointer-compare]
1539	:info:build if (NULL != ckptFileName)
1540	:info:build ~~~~ ^~~~~~~~~~~~
1541	:info:build cddutil.c:6267:1: warning: '/*' within block comment [-Wcomment]
1542	:info:build /---------------------------------------------------------------------------/
1543	:info:build ^
1544	:info:build 4 warnings generated.
1545	:info:build cc -pipe -DNDEBUG -O2 -c -I../include cddposutil.c
1546	:info:build cc -pipe -DNDEBUG -O2 -c -I../include objmime.c
1547	:info:build cc -pipe -DNDEBUG -O2 -c -I../include strucapi.c
1548	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdalgs.c
1549	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdatd.c
1550	:info:build thrdatd.c:1804:40: warning: data argument not used by format string [-Wformat-extra-args]
1551	:info:build fprintf(pFile, "for each thread:\n", ttb->n);
1552	:info:build ~~~~~~~~~~~~~~~~~~~~ ^
1553	:info:build 1 warning generated.
1554	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdbwfi.c
1555	:info:build thrdbwfi.c:114:1: warning: non-void function does not return a value [-Wreturn-type]
1556	:info:build }
1557	:info:build ^
1558	:info:build 1 warning generated.
1559	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdcpal.c
1560	:info:build thrdcpal.c:210:1: warning: non-void function does not return a value [-Wreturn-type]
1561	:info:build }
1562	:info:build ^
1563	:info:build 1 warning generated.
1564	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdcpll.c
1565	:info:build thrdcpll.c:229:1: warning: non-void function does not return a value [-Wreturn-type]
1566	:info:build }
1567	:info:build ^
1568	:info:build 1 warning generated.
1569	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdcprl.c
1570	:info:build thrdcprl.c:261:1: warning: non-void function does not return a value [-Wreturn-type]
1571	:info:build }
1572	:info:build ^
1573	:info:build 1 warning generated.
1574	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdcxei.c
1575	:info:build thrdcxei.c:205:1: warning: non-void function does not return a value [-Wreturn-type]
1576	:info:build }
1577	:info:build ^
1578	:info:build 1 warning generated.
1579	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrddgri.c
1580	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdrsmp.c
1581	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdsal0.c
1582	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdsalr.c
1583	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdsalu.c
1584	:info:build thrdsalu.c:83:1: warning: non-void function does not return a value [-Wreturn-type]
1585	:info:build }
1586	:info:build ^
1587	:info:build 1 warning generated.
1588	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdsgoi.c
1589	:info:build thrdsgoi.c:123:1: warning: non-void function does not return a value [-Wreturn-type]
1590	:info:build }
1591	:info:build ^
1592	:info:build 1 warning generated.
1593	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdslo0.c
1594	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdslor.c
1595	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdslou.c
1596	:info:build thrdslou.c:114:1: warning: non-void function does not return a value [-Wreturn-type]
1597	:info:build }
1598	:info:build ^
1599	:info:build 1 warning generated.
1600	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdspci.c
1601	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdspea.c
1602	:info:build thrdspea.c:189:1: warning: non-void function does not return a value [-Wreturn-type]
1603	:info:build }
1604	:info:build ^
1605	:info:build 1 warning generated.
1606	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdspel.c
1607	:info:build thrdspel.c:188:1: warning: non-void function does not return a value [-Wreturn-type]
1608	:info:build }
1609	:info:build ^
1610	:info:build 1 warning generated.
1611	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdspni.c
1612	:info:build thrdspni.c:238:1: warning: non-void function does not return a value [-Wreturn-type]
1613	:info:build }
1614	:info:build ^
1615	:info:build 1 warning generated.
1616	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdttb0.c
1617	:info:build thrdttb0.c:75:1: warning: non-void function does not return a value [-Wreturn-type]
1618	:info:build }
1619	:info:build ^
1620	:info:build 1 warning generated.
1621	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdttbi.c
1622	:info:build cc -pipe -DNDEBUG -O2 -c -I../include thrdzsc.c
1623	:info:build thrdzsc.c:369:1: warning: non-void function does not return a value [-Wreturn-type]
1624	:info:build }
1625	:info:build ^
1626	:info:build 1 warning generated.
1627	:info:build rm -f libncbimmdb.a
1628	:info:build ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o
1629	:info:build cp -p libncbimmdb.a ../lib
1630	:info:build ranlib ../lib/libncbimmdb.a
1631	:info:build cc -pipe -DNDEBUG -O2 -c -I../include csim.c
1632	:info:build csim.c:1363:3: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1633	:info:build else
1634	:info:build ^
1635	:info:build 1 warning generated.
1636	:info:build cc -pipe -DNDEBUG -O2 -c -I../include db_slist.c
1637	:info:build cc -pipe -DNDEBUG -O2 -c -I../include dust.c
1638	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_dust.c
1639	:info:build cc -pipe -DNDEBUG -O2 -c -I../include falign.c
1640	:info:build falign.c:668:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1641	:info:build if (df = cdiag_prev[l]) {
1642	:info:build ~~~^~~~~~~~~~~~~~~
1643	:info:build falign.c:668:10: note: place parentheses around the assignment to silence this warning
1644	:info:build if (df = cdiag_prev[l]) {
1645	:info:build ^
1646	:info:build ( )
1647	:info:build falign.c:668:10: note: use '==' to turn this assignment into an equality comparison
1648	:info:build if (df = cdiag_prev[l]) {
1649	:info:build ^
1650	:info:build ==
1651	:info:build falign.c:710:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1652	:info:build if (df = diag_prev[len1+len2-1-pos]) {
1653	:info:build ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
1654	:info:build falign.c:710:10: note: place parentheses around the assignment to silence this warning
1655	:info:build if (df = diag_prev[len1+len2-1-pos]) {
1656	:info:build ^
1657	:info:build ( )
1658	:info:build falign.c:710:10: note: use '==' to turn this assignment into an equality comparison
1659	:info:build if (df = diag_prev[len1+len2-1-pos]) {
1660	:info:build ^
1661	:info:build ==
1662	:info:build falign.c:719:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1663	:info:build if (df=diag_prev[l]) {
1664	:info:build ~~^~~~~~~~~~~~~
1665	:info:build falign.c:719:9: note: place parentheses around the assignment to silence this warning
1666	:info:build if (df=diag_prev[l]) {
1667	:info:build ^
1668	:info:build ( )
1669	:info:build falign.c:719:9: note: use '==' to turn this assignment into an equality comparison
1670	:info:build if (df=diag_prev[l]) {
1671	:info:build ^
1672	:info:build ==
1673	:info:build falign.c:881:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1674	:info:build if (df = diag_prev[len1+se2-pos]) {
1675	:info:build ~~~^~~~~~~~~~~~~~~~~~~~~~~~~
1676	:info:build falign.c:881:10: note: place parentheses around the assignment to silence this warning
1677	:info:build if (df = diag_prev[len1+se2-pos]) {
1678	:info:build ^
1679	:info:build ( )
1680	:info:build falign.c:881:10: note: use '==' to turn this assignment into an equality comparison
1681	:info:build if (df = diag_prev[len1+se2-pos]) {
1682	:info:build ^
1683	:info:build ==
1684	:info:build falign.c:889:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1685	:info:build if (df = diag_prev[len1+se2-pos]) {
1686	:info:build ~~~^~~~~~~~~~~~~~~~~~~~~~~~~
1687	:info:build falign.c:889:10: note: place parentheses around the assignment to silence this warning
1688	:info:build if (df = diag_prev[len1+se2-pos]) {
1689	:info:build ^
1690	:info:build ( )
1691	:info:build falign.c:889:10: note: use '==' to turn this assignment into an equality comparison
1692	:info:build if (df = diag_prev[len1+se2-pos]) {
1693	:info:build ^
1694	:info:build ==
1695	:info:build falign.c:1547:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1696	:info:build if (pf = diag_prev[ocur_diag]) {
1697	:info:build ~~~^~~~~~~~~~~~~~~~~~~~~~
1698	:info:build falign.c:1547:9: note: place parentheses around the assignment to silence this warning
1699	:info:build if (pf = diag_prev[ocur_diag]) {
1700	:info:build ^
1701	:info:build ( )
1702	:info:build falign.c:1547:9: note: use '==' to turn this assignment into an equality comparison
1703	:info:build if (pf = diag_prev[ocur_diag]) {
1704	:info:build ^
1705	:info:build ==
1706	:info:build falign.c:1897:8: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1707	:info:build if (s = findS(f->bgf)) {
1708	:info:build ~~^~~~~~~~~~~~~~~
1709	:info:build falign.c:1897:8: note: place parentheses around the assignment to silence this warning
1710	:info:build if (s = findS(f->bgf)) {
1711	:info:build ^
1712	:info:build ( )
1713	:info:build falign.c:1897:8: note: use '==' to turn this assignment into an equality comparison
1714	:info:build if (s = findS(f->bgf)) {
1715	:info:build ^
1716	:info:build ==
1717	:info:build falign.c:1958:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1718	:info:build if (pf = diag_prev[cur_diag]) {
1719	:info:build ~~~^~~~~~~~~~~~~~~~~~~~~
1720	:info:build falign.c:1958:9: note: place parentheses around the assignment to silence this warning
1721	:info:build if (pf = diag_prev[cur_diag]) {
1722	:info:build ^
1723	:info:build ( )
1724	:info:build falign.c:1958:9: note: use '==' to turn this assignment into an equality comparison
1725	:info:build if (pf = diag_prev[cur_diag]) {
1726	:info:build ^
1727	:info:build ==
1728	:info:build falign.c:1999:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1729	:info:build if (pf = cdiag_prev[cur_diag]) {
1730	:info:build ~~~^~~~~~~~~~~~~~~~~~~~~~
1731	:info:build falign.c:1999:9: note: place parentheses around the assignment to silence this warning
1732	:info:build if (pf = cdiag_prev[cur_diag]) {
1733	:info:build ^
1734	:info:build ( )
1735	:info:build falign.c:1999:9: note: use '==' to turn this assignment into an equality comparison
1736	:info:build if (pf = cdiag_prev[cur_diag]) {
1737	:info:build ^
1738	:info:build ==
1739	:info:build falign.c:2054:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1740	:info:build if (pf = cdiag_prev[cur_diag]) {
1741	:info:build ~~~^~~~~~~~~~~~~~~~~~~~~~
1742	:info:build falign.c:2054:9: note: place parentheses around the assignment to silence this warning
1743	:info:build if (pf = cdiag_prev[cur_diag]) {
1744	:info:build ^
1745	:info:build ( )
1746	:info:build falign.c:2054:9: note: use '==' to turn this assignment into an equality comparison
1747	:info:build if (pf = cdiag_prev[cur_diag]) {
1748	:info:build ^
1749	:info:build ==
1750	:info:build falign.c:2109:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1751	:info:build if (pf = cdiag_prev[cur_diag]) {
1752	:info:build ~~~^~~~~~~~~~~~~~~~~~~~~~
1753	:info:build falign.c:2109:9: note: place parentheses around the assignment to silence this warning
1754	:info:build if (pf = cdiag_prev[cur_diag]) {
1755	:info:build ^
1756	:info:build ( )
1757	:info:build falign.c:2109:9: note: use '==' to turn this assignment into an equality comparison
1758	:info:build if (pf = cdiag_prev[cur_diag]) {
1759	:info:build ^
1760	:info:build ==
1761	:info:build 11 warnings generated.
1762	:info:build cc -pipe -DNDEBUG -O2 -c -I../include g_any.c
1763	:info:build cc -pipe -DNDEBUG -O2 -c -I../include sim2.c
1764	:info:build cc -pipe -DNDEBUG -O2 -c -I../include sim3.c
1765	:info:build cc -pipe -DNDEBUG -O2 -c -I../include sim4.c
1766	:info:build sim4.c:630:12: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1767	:info:build while(i1 = sgp->Blist[i].next) {
1768	:info:build ~~~^~~~~~~~~~~~~~~~~~~~
1769	:info:build sim4.c:630:12: note: place parentheses around the assignment to silence this warning
1770	:info:build while(i1 = sgp->Blist[i].next) {
1771	:info:build ^
1772	:info:build ( )
1773	:info:build sim4.c:630:12: note: use '==' to turn this assignment into an equality comparison
1774	:info:build while(i1 = sgp->Blist[i].next) {
1775	:info:build ^
1776	:info:build ==
1777	:info:build sim4.c:1792:16: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1778	:info:build } else goto fin;
1779	:info:build ^
1780	:info:build sim4.c:1836:27: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1781	:info:build } else goto fin;
1782	:info:build ^
1783	:info:build sim4.c:1881:27: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1784	:info:build } else goto fin;
1785	:info:build ^
1786	:info:build sim4.c:1989:22: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1787	:info:build } else goto fin;
1788	:info:build ^
1789	:info:build sim4.c:2035:22: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1790	:info:build } else goto fin;
1791	:info:build ^
1792	:info:build sim4.c:2080:22: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1793	:info:build } else goto fin;
1794	:info:build ^
1795	:info:build 7 warnings generated.
1796	:info:build cc -pipe -DNDEBUG -O2 -c -I../include simutil.c
1797	:info:build cc -pipe -DNDEBUG -O2 -c -I../include slist.c
1798	:info:build cc -pipe -DNDEBUG -O2 -c -I../include sec.c
1799	:info:build cc -pipe -DNDEBUG -O2 -c -I../include tfuns.c
1800	:info:build cc -pipe -DNDEBUG -O2 -c -I../include toasn3.c
1801	:info:build cc -pipe -DNDEBUG -O2 -c -I../include toporg.c
1802	:info:build toporg.c:4171:12: warning: logical not is only applied to the left hand side of this comparison [-Wlogical-not-parentheses]
1803	:info:build \|\| !cgp_fig->serial_number != cgp_nofig->serial_number) {
1804	:info:build ^ ~~
1805	:info:build toporg.c:4171:12: note: add parentheses after the '!' to evaluate the comparison first
1806	:info:build \|\| !cgp_fig->serial_number != cgp_nofig->serial_number) {
1807	:info:build ^
1808	:info:build ( )
1809	:info:build toporg.c:4171:12: note: add parentheses around left hand side expression to silence this warning
1810	:info:build \|\| !cgp_fig->serial_number != cgp_nofig->serial_number) {
1811	:info:build ^
1812	:info:build ( )
1813	:info:build 1 warning generated.
1814	:info:build cc -pipe -DNDEBUG -O2 -c -I../include pobutil.c
1815	:info:build pobutil.c:2380:27: warning: setting buffer to a 'sizeof' expression; did you mean to transpose the last two arguments? [-Wmemset-transposed-args]
1816	:info:build MemSet((Pointer) (&tmp), sizeof(ValNode), 0);
1817	:info:build ^
1818	:info:build ../include/ncbimem.h:210:17: note: expanded from macro 'MemSet'
1819	:info:build #define MemSet Nlm_MemSet
1820	:info:build ^
1821	:info:build ../include/ncbimem.h:191:21: note: expanded from macro 'Nlm_MemSet'
1822	:info:build #define Nlm_MemSet memset
1823	:info:build ^
1824	:info:build pobutil.c:2380:27: note: cast the second argument to 'int' to silence
1825	:info:build ../include/ncbimem.h:210:17: note: expanded from macro 'MemSet'
1826	:info:build #define MemSet Nlm_MemSet
1827	:info:build ^
1828	:info:build ../include/ncbimem.h:191:21: note: expanded from macro 'Nlm_MemSet'
1829	:info:build #define Nlm_MemSet memset
1830	:info:build ^
1831	:info:build pobutil.c:2381:26: warning: setting buffer to a 'sizeof' expression; did you mean to transpose the last two arguments? [-Wmemset-transposed-args]
1832	:info:build MemSet((Pointer) (&si), sizeof(SeqInt), 0);
1833	:info:build ^
1834	:info:build ../include/ncbimem.h:210:17: note: expanded from macro 'MemSet'
1835	:info:build #define MemSet Nlm_MemSet
1836	:info:build ^
1837	:info:build ../include/ncbimem.h:191:21: note: expanded from macro 'Nlm_MemSet'
1838	:info:build #define Nlm_MemSet memset
1839	:info:build ^
1840	:info:build pobutil.c:2381:26: note: cast the second argument to 'int' to silence
1841	:info:build ../include/ncbimem.h:210:17: note: expanded from macro 'MemSet'
1842	:info:build #define MemSet Nlm_MemSet
1843	:info:build ^
1844	:info:build ../include/ncbimem.h:191:21: note: expanded from macro 'Nlm_MemSet'
1845	:info:build #define Nlm_MemSet memset
1846	:info:build ^
1847	:info:build 2 warnings generated.
1848	:info:build cc -pipe -DNDEBUG -O2 -c -I../include stsutil.c
1849	:info:build cc -pipe -DNDEBUG -O2 -c -I../include suggadj.c
1850	:info:build cc -pipe -DNDEBUG -O2 -c -I../include suggest.c
1851	:info:build cc -pipe -DNDEBUG -O2 -c -I../include suggslp.c
1852	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast.c
1853	:info:build blast.c:3179:29: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1854	:info:build if (virtual_oidlist = rdfp_chain->oidlist) {
1855	:info:build ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
1856	:info:build blast.c:3179:29: note: place parentheses around the assignment to silence this warning
1857	:info:build if (virtual_oidlist = rdfp_chain->oidlist) {
1858	:info:build ^
1859	:info:build ( )
1860	:info:build blast.c:3179:29: note: use '==' to turn this assignment into an equality comparison
1861	:info:build if (virtual_oidlist = rdfp_chain->oidlist) {
1862	:info:build ^
1863	:info:build ==
1864	:info:build blast.c:3210:29: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1865	:info:build if (virtual_oidlist = BlastGetVirtualOIDList(rdfp)) {
1866	:info:build ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1867	:info:build blast.c:3210:29: note: place parentheses around the assignment to silence this warning
1868	:info:build if (virtual_oidlist = BlastGetVirtualOIDList(rdfp)) {
1869	:info:build ^
1870	:info:build ( )
1871	:info:build blast.c:3210:29: note: use '==' to turn this assignment into an equality comparison
1872	:info:build if (virtual_oidlist = BlastGetVirtualOIDList(rdfp)) {
1873	:info:build ^
1874	:info:build ==
1875	:info:build blast.c:10121:25: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1876	:info:build else if( del_index < new_index )
1877	:info:build ^
1878	:info:build 3 warnings generated.
1879	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blastutl.c
1880	:info:build blastutl.c:7542:12: warning: expression result unused [-Wunused-value]
1881	:info:build stop_timer("after repeat filtering");
1882	:info:build ^~~~~~~~~~~~~~~~~~~~~~~~
1883	:info:build blastutl.c:10270:12: warning: expression result unused [-Wunused-value]
1884	:info:build stop_timer("after BlastGappedScoreInternal");
1885	:info:build ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1886	:info:build 2 warnings generated.
1887	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blastool.c
1888	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blastconcat.c
1889	:info:build cc -pipe -DNDEBUG -O2 -c -I../include splutil.c
1890	:info:build cc -pipe -DNDEBUG -O2 -c -I../include gapxdrop.c
1891	:info:build gapxdrop.c:866:4: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1892	:info:build else if ((t/10)%3 == 2) k = 3;
1893	:info:build ^
1894	:info:build gapxdrop.c:869:4: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1895	:info:build else if ((t/30) == 2) k = 3;
1896	:info:build ^
1897	:info:build 2 warnings generated.
1898	:info:build cc -pipe -DNDEBUG -O2 -c -I../include bandalg0.c
1899	:info:build bandalg0.c:277:4: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1900	:info:build } else {
1901	:info:build ^
1902	:info:build 1 warning generated.
1903	:info:build cc -pipe -DNDEBUG -O2 -c -I../include bandalg1.c
1904	:info:build bandalg1.c:210:7: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1905	:info:build else data->CD[leftd - 1].DD = e;
1906	:info:build ^
1907	:info:build 1 warning generated.
1908	:info:build cc -pipe -DNDEBUG -O2 -c -I../include bandalg2.c
1909	:info:build cc -pipe -DNDEBUG -O2 -c -I../include bandalg3.c
1910	:info:build cc -pipe -DNDEBUG -O2 -c -I../include bandalg4.c
1911	:info:build bandalg4.c:828:7: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1912	:info:build else if ((t/10)%3 == 2) k = 3;
1913	:info:build ^
1914	:info:build bandalg4.c:831:7: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1915	:info:build else if ((t/30) == 2) k = 3;
1916	:info:build ^
1917	:info:build 2 warnings generated.
1918	:info:build cc -pipe -DNDEBUG -O2 -c -I../include bandalg5.c
1919	:info:build bandalg5.c:294:7: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1920	:info:build else if ((t/10)%3 == 2) k = 3;
1921	:info:build ^
1922	:info:build bandalg5.c:297:7: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1923	:info:build else if ((t/30) == 2) k = 3;
1924	:info:build ^
1925	:info:build 2 warnings generated.
1926	:info:build cc -pipe -DNDEBUG -O2 -c -I../include bandalgn.c
1927	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blastkar.c
1928	:info:build blastkar.c:4936:10: warning: implicit conversion from 'double' to 'Nlm_Int2' (aka 'short') changes value from 0.5 to 0 [-Wliteral-conversion]
1929	:info:build return 0.5;
1930	:info:build ~~~~~~ ^~~
1931	:info:build 1 warning generated.
1932	:info:build cc -pipe -DNDEBUG -O2 -c -I../include actutils.c
1933	:info:build actutils.c:2822:84: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_BoolPtr' (aka 'unsigned char *') [-Wnon-literal-null-conversion]
1934	:info:build slp = SeqLocCopyRegion (sip, sfp->location, bsp, 0, bsp->length - 1, strand, FALSE);
1935	:info:build ^~~~~
1936	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1937	:info:build #define FALSE ((Nlm_Boolean)0)
1938	:info:build ^~~~~~~~~~~~~~~~
1939	:info:build actutils.c:2831:88: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_BoolPtr' (aka 'unsigned char *') [-Wnon-literal-null-conversion]
1940	:info:build slp = SeqLocCopyRegion (sip, cbp->loc, bsp, 0, bsp->length - 1, strand, FALSE);
1941	:info:build ^~~~~
1942	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1943	:info:build #define FALSE ((Nlm_Boolean)0)
1944	:info:build ^~~~~~~~~~~~~~~~
1945	:info:build actutils.c:2843:94: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_BoolPtr' (aka 'unsigned char *') [-Wnon-literal-null-conversion]
1946	:info:build slp = SeqLocCopyRegion (sip, trp->anticodon, bsp, 0, bsp->length - 1, strand, FALSE);
1947	:info:build ^~~~~
1948	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1949	:info:build #define FALSE ((Nlm_Boolean)0)
1950	:info:build ^~~~~~~~~~~~~~~~
1951	:info:build 3 warnings generated.
1952	:info:build cc -pipe -DNDEBUG -O2 -c -I../include posit.c
1953	:info:build cc -pipe -DNDEBUG -O2 -c -I../include lookup.c
1954	:info:build lookup.c:1198:56: warning: for loop has empty body [-Wempty-body]
1955	:info:build index>0; index=mb_lt->next_pos[index], pcount++);
1956	:info:build ^
1957	:info:build lookup.c:1198:56: note: put the semicolon on a separate line to silence this warning
1958	:info:build 1 warning generated.
1959	:info:build cc -pipe -DNDEBUG -O2 -c -I../include readdb.c
1960	:info:build readdb.c:2462:13: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1961	:info:build else
1962	:info:build ^
1963	:info:build readdb.c:3079:37: warning: format specifies type 'long long ' but the argument has type 'Nlm_Int8 ' (aka 'long *') [-Wformat]
1964	:info:build sscanf(ptr, "%lld", &(rdbap->len));
1965	:info:build ~~~~ ^~~~~~~~~~~~~
1966	:info:build %ld
1967	:info:build readdb.c:6205:34: warning: 'memset' call operates on objects of type 'char' while the size is based on a different type 'Nlm_CharPtr' (aka 'char *') [-Wsizeof-pointer-memaccess]
1968	:info:build MemSet(defline, '\0', sizeof(defline));
1969	:info:build ~~~~~~~ ^~~~~~~
1970	:info:build readdb.c:6205:34: note: did you mean to provide an explicit length?
1971	:info:build MemSet(defline, '\0', sizeof(defline));
1972	:info:build ^~~~~~~
1973	:info:build readdb.c:7956:60: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
1974	:info:build sprintf(opts_tmp.base_name, "%s.%02ld", base_name, volume);
1975	:info:build ~~~~~ ^~~~~~
1976	:info:build %02d
1977	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1978	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1979	:info:build ^~~~~~~~~~~
1980	:info:build readdb.c:9641:26: warning: address of array 'srp->div' will always evaluate to 'true' [-Wpointer-bool-conversion]
1981	:info:build srp->div ? srp->div : "N/A", (long) SequenceLen,
1982	:info:build ~~~~~^~~ ~
1983	:info:build readdb.c:9690:45: warning: address of array 'pc->div' will always evaluate to 'true' [-Wpointer-bool-conversion]
1984	:info:build (long) direc.owner, pc->div ? pc->div : "N/A",
1985	:info:build ~~~~^~~ ~
1986	:info:build readdb.c:11517:64: warning: format specifies type 'char *' but the argument has type 'int' [-Wformat]
1987	:info:build "(read %d fields instead of the expected %d)", total+1,
1988	:info:build ^~~~~~~
1989	:info:build readdb.c:11518:17: warning: format specifies type 'int' but the argument has type 'Nlm_CharPtr' (aka 'char *') [-Wformat]
1990	:info:build difilename, readstat, kNumFieldsDiFile);
1991	:info:build ^~~~~~~~~~
1992	:info:build 8 warnings generated.
1993	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbisam.c
1994	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbisort.c
1995	:info:build ncbisort.c:692:12: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
1996	:info:build register tmpa = UCHAR(a), tmpb = UCHAR(b);
1997	:info:build ~~~~~~~~ ^
1998	:info:build ncbisort.c:692:30: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
1999	:info:build register tmpa = UCHAR(a), tmpb = UCHAR(b);
2000	:info:build ~~~~~~~~ ^
2001	:info:build 2 warnings generated.
2002	:info:build cc -pipe -DNDEBUG -O2 -c -I../include salign.c
2003	:info:build cc -pipe -DNDEBUG -O2 -c -I../include salptool.c
2004	:info:build cc -pipe -DNDEBUG -O2 -c -I../include urkutil.c
2005	:info:build cc -pipe -DNDEBUG -O2 -c -I../include urkpcc.c
2006	:info:build cc -pipe -DNDEBUG -O2 -c -I../include urkptpf.c
2007	:info:build cc -pipe -DNDEBUG -O2 -c -I../include urkepi.c
2008	:info:build cc -pipe -DNDEBUG -O2 -c -I../include urkfltr.c
2009	:info:build cc -pipe -DNDEBUG -O2 -c -I../include urkdust.c
2010	:info:build cc -pipe -DNDEBUG -O2 -c -I../include urksigu.c
2011	:info:build cc -pipe -DNDEBUG -O2 -c -I../include seg.c
2012	:info:build cc -pipe -DNDEBUG -O2 -c -I../include urkbias.c
2013	:info:build cc -pipe -DNDEBUG -O2 -c -I../include urkcnsrt.c
2014	:info:build cc -pipe -DNDEBUG -O2 -c -I../include urktree.c
2015	:info:build cc -pipe -DNDEBUG -O2 -c -I../include pseed3.c
2016	:info:build pseed3.c:504:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2017	:info:build while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray, &numPatOccur, &effectiveOccurrences, program_flag, unfilter_query, query, search->sbp->query_length, is_dna, patternSearch, seedSearch, showDiagnostics, &(search->error_return), info_vnp, hitArraySz)) {
2018	:info:build ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019	:info:build pseed3.c:504:20: note: place parentheses around the assignment to silence this warning
2020	:info:build while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray, &numPatOccur, &effectiveOccurrences, program_flag, unfilter_query, query, search->sbp->query_length, is_dna, patternSearch, seedSearch, showDiagnostics, &(search->error_return), info_vnp, hitArraySz)) {
2021	:info:build ^
2022	:info:build ( )
2023	:info:build pseed3.c:504:20: note: use '==' to turn this assignment into an equality comparison
2024	:info:build while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray, &numPatOccur, &effectiveOccurrences, program_flag, unfilter_query, query, search->sbp->query_length, is_dna, patternSearch, seedSearch, showDiagnostics, &(search->error_return), info_vnp, hitArraySz)) {
2025	:info:build ^
2026	:info:build ==
2027	:info:build 1 warning generated.
2028	:info:build cc -pipe -DNDEBUG -O2 -c -I../include pattern1.c
2029	:info:build pattern1.c:534:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2030	:info:build if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
2031	:info:build ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2032	:info:build pattern1.c:534:13: note: place parentheses around the assignment to silence this warning
2033	:info:build if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
2034	:info:build ^
2035	:info:build ( )
2036	:info:build pattern1.c:534:13: note: use '==' to turn this assignment into an equality comparison
2037	:info:build if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
2038	:info:build ^
2039	:info:build ==
2040	:info:build pattern1.c:547:11: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2041	:info:build if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
2042	:info:build ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2043	:info:build pattern1.c:547:11: note: place parentheses around the assignment to silence this warning
2044	:info:build if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
2045	:info:build ^
2046	:info:build ( )
2047	:info:build pattern1.c:547:11: note: use '==' to turn this assignment into an equality comparison
2048	:info:build if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
2049	:info:build ^
2050	:info:build ==
2051	:info:build pattern1.c:744:8: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
2052	:info:build static and(Int4 result, Int4 a, Int4 b, patternSearchItems patternSearch)
2053	:info:build ~~~~~~ ^
2054	:info:build pattern1.c:750:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2055	:info:build if (result[i] = (a[i] & b[i]))
2056	:info:build ~~~~~~~~~~^~~~~~~~~~~~~~~
2057	:info:build pattern1.c:750:21: note: place parentheses around the assignment to silence this warning
2058	:info:build if (result[i] = (a[i] & b[i]))
2059	:info:build ^
2060	:info:build ( )
2061	:info:build pattern1.c:750:21: note: use '==' to turn this assignment into an equality comparison
2062	:info:build if (result[i] = (a[i] & b[i]))
2063	:info:build ^
2064	:info:build ==
2065	:info:build pattern1.c:1107:6: warning: add explicit braces to avoid dangling else [-Wdangling-else]
2066	:info:build else {
2067	:info:build ^
2068	:info:build 5 warnings generated.
2069	:info:build cc -pipe -DNDEBUG -O2 -c -I../include impatool.c
2070	:info:build cc -pipe -DNDEBUG -O2 -c -I../include posit2.c
2071	:info:build cc -pipe -DNDEBUG -O2 -c -I../include mbalign.c
2072	:info:build cc -pipe -DNDEBUG -O2 -c -I../include vecscrn.c
2073	:info:build cc -pipe -DNDEBUG -O2 -c -I../include mblast.c
2074	:info:build mblast.c:961:13: warning: expression result unused [-Wunused-value]
2075	:info:build stop_timer("BioseqBlastEngineCore: before do_the_blast_run()");
2076	:info:build ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2077	:info:build mblast.c:987:13: warning: expression result unused [-Wunused-value]
2078	:info:build stop_timer("MegaBlastEngineCore: after do_the_blast_run()");
2079	:info:build ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2080	:info:build 2 warnings generated.
2081	:info:build cc -pipe -DNDEBUG -O2 -c -I../include rpsutil.c
2082	:info:build rpsutil.c:399:9: warning: comparison of array 'underlyingMatrixName' not equal to a null pointer is always true [-Wtautological-pointer-compare]
2083	:info:build if (underlyingMatrixName != NULL)
2084	:info:build ^~~~~~~~~~~~~~~~~~~~ ~~~~
2085	:info:build rpsutil.c:2190:16: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare]
2086	:info:build if (ptr != NULLB)
2087	:info:build ^~~~~
2088	:info:build (void *)0
2089	:info:build ../include/ncbistd.h:259:15: note: expanded from macro 'NULLB'
2090	:info:build #define NULLB '\0'
2091	:info:build ^
2092	:info:build 2 warnings generated.
2093	:info:build cc -pipe -DNDEBUG -O2 -c -I../include kappa.c
2094	:info:build cc -pipe -DNDEBUG -O2 -c -I../include xmlblast.c
2095	:info:build xmlblast.c:1016:16: warning: expression which evaluates to zero treated as a null pointer constant of type 'BlastOutputPtr' (aka 'struct struct_BlastOutput *') [-Wnon-literal-null-conversion]
2096	:info:build return FALSE;
2097	:info:build ^~~~~
2098	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
2099	:info:build #define FALSE ((Nlm_Boolean)0)
2100	:info:build ^~~~~~~~~~~~~~~~
2101	:info:build 1 warning generated.
2102	:info:build cc -pipe -DNDEBUG -O2 -c -I../include bxmlobj.c
2103	:info:build cc -pipe -DNDEBUG -O2 -c -I../include dotseq.c
2104	:info:build cc -pipe -DNDEBUG -O2 -c -I../include spidey.c
2105	:info:build spidey.c:2091:37: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
2106	:info:build fprintf(ofp2, buf);
2107	:info:build ^~~
2108	:info:build spidey.c:2091:37: note: treat the string as an argument to avoid this
2109	:info:build fprintf(ofp2, buf);
2110	:info:build ^
2111	:info:build "%s",
2112	:info:build spidey.c:2420:39: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
2113	:info:build fprintf(ofp2, buf);
2114	:info:build ^~~
2115	:info:build spidey.c:2420:39: note: treat the string as an argument to avoid this
2116	:info:build fprintf(ofp2, buf);
2117	:info:build ^
2118	:info:build "%s",
2119	:info:build 2 warnings generated.
2120	:info:build cc -pipe -DNDEBUG -O2 -c -I../include motif.c
2121	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blfmtutl.c
2122	:info:build rm -f libncbitool.a
2123	:info:build ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o
2124	:info:build cp -p libncbitool.a ../lib
2125	:info:build ranlib ../lib/libncbitool.a
2126	:info:build cc -pipe -DNDEBUG -O2 -c -I../include matrix_frequency_data.c
2127	:info:build cc -pipe -DNDEBUG -O2 -c -I../include compo_mode_condition.c
2128	:info:build cc -pipe -DNDEBUG -O2 -c -I../include composition_adjustment.c
2129	:info:build cc -pipe -DNDEBUG -O2 -c -I../include nlm_linear_algebra.c
2130	:info:build cc -pipe -DNDEBUG -O2 -c -I../include optimize_target_freq.c
2131	:info:build cc -pipe -DNDEBUG -O2 -c -I../include compo_heap.c
2132	:info:build cc -pipe -DNDEBUG -O2 -c -I../include smith_waterman.c
2133	:info:build cc -pipe -DNDEBUG -O2 -c -I../include redo_alignment.c
2134	:info:build cc -pipe -DNDEBUG -O2 -c -I../include unified_pvalues.c
2135	:info:build rm -f libblastcompadj.a
2136	:info:build ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o
2137	:info:build cp -p libblastcompadj.a ../lib
2138	:info:build ranlib ../lib/libblastcompadj.a
2139	:info:build cc -pipe -DNDEBUG -O2 -c -I../include chartables.c
2140	:info:build cc -pipe -DNDEBUG -O2 -c -I../include get.c
2141	:info:build cc -pipe -DNDEBUG -O2 -c -I../include maketables.c
2142	:info:build cc -pipe -DNDEBUG -O2 -c -I../include pcre.c
2143	:info:build cc -pipe -DNDEBUG -O2 -c -I../include pcreposix.c
2144	:info:build cc -pipe -DNDEBUG -O2 -c -I../include study.c
2145	:info:build rm -f libregexp.a
2146	:info:build ar cru libregexp.a chartables.o get.o maketables.o pcre.o pcreposix.o study.o
2147	:info:build cp -p libregexp.a ../lib
2148	:info:build ranlib ../lib/libregexp.a
2149	:info:build cc -pipe -DNDEBUG -O2 -c -I../include aa_ungapped.c
2150	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_diagnostics.c
2151	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_engine.c
2152	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_extend.c
2153	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_filter.c
2154	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_gapalign.c
2155	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_hits.c
2156	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_itree.c
2157	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_lookup.c
2158	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_message.c
2159	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_options.c
2160	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_seg.c
2161	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_seqsrc.c
2162	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_sw.c
2163	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_setup.c
2164	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_stat.c
2165	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_traceback.c
2166	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_util.c
2167	:info:build cc -pipe -DNDEBUG -O2 -c -I../include gapinfo.c
2168	:info:build cc -pipe -DNDEBUG -O2 -c -I../include greedy_align.c
2169	:info:build cc -pipe -DNDEBUG -O2 -c -I../include hspstream_collector.c
2170	:info:build cc -pipe -DNDEBUG -O2 -c -I../include link_hsps.c
2171	:info:build cc -pipe -DNDEBUG -O2 -c -I../include lookup_wrap.c
2172	:info:build cc -pipe -DNDEBUG -O2 -c -I../include na_ungapped.c
2173	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_math.c
2174	:info:build cc -pipe -DNDEBUG -O2 -c -I../include ncbi_std.c
2175	:info:build cc -pipe -DNDEBUG -O2 -c -I../include pattern.c
2176	:info:build cc -pipe -DNDEBUG -O2 -c -I../include phi_extend.c
2177	:info:build cc -pipe -DNDEBUG -O2 -c -I../include phi_lookup.c
2178	:info:build cc -pipe -DNDEBUG -O2 -c -I../include lookup_util.c
2179	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_encoding.c
2180	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_psi.c
2181	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_psi_priv.c
2182	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_kappa.c
2183	:info:build cc -pipe -DNDEBUG -O2 -c -I../include matrix_freq_ratios.c
2184	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_hspstream.c
2185	:info:build blast_hspstream.c:114:32: warning: self-comparison always evaluates to false [-Wtautological-compare]
2186	:info:build if (hsp_stream->MergeFnPtr != hsp_stream->MergeFnPtr)
2187	:info:build ^
2188	:info:build 1 warning generated.
2189	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_parameters.c
2190	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_posit.c
2191	:info:build cc -pipe -DNDEBUG -O2 -c -I../include phi_gapalign.c
2192	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_program.c
2193	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_query_info.c
2194	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_tune.c
2195	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_aalookup.c
2196	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_nalookup.c
2197	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_aascan.c
2198	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_nascan.c
2199	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_dynarray.c
2200	:info:build cc -pipe -DNDEBUG -O2 -c -I../include split_query.c
2201	:info:build cc -pipe -DNDEBUG -O2 -c -I../include gencode_singleton.c
2202	:info:build cc -pipe -DNDEBUG -O2 -c -I../include index_ungapped.c
2203	:info:build rm -f libblast.a
2204	:info:build ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspstream_collector.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o
2205	:info:build cp -p libblast.a ../lib
2206	:info:build ranlib ../lib/libblast.a
2207	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_api.c
2208	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_input.c
2209	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_format.c
2210	:info:build blast_format.c:160:16: warning: expression which evaluates to zero treated as a null pointer constant of type 'BlastOutput ' (aka 'struct struct_BlastOutput ') [-Wnon-literal-null-conversion]
2211	:info:build return FALSE;
2212	:info:build ^~~~~
2213	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
2214	:info:build #define FALSE ((Nlm_Boolean)0)
2215	:info:build ^~~~~~~~~~~~~~~~
2216	:info:build 1 warning generated.
2217	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_mtlock.c
2218	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_options_api.c
2219	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_prelim.c
2220	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_returns.c
2221	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_seq.c
2222	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_seqalign.c
2223	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_tabular.c
2224	:info:build cc -pipe -DNDEBUG -O2 -c -I../include hspstream_queue.c
2225	:info:build cc -pipe -DNDEBUG -O2 -c -I../include repeats_filter.c
2226	:info:build cc -pipe -DNDEBUG -O2 -c -I../include seqsrc_multiseq.c
2227	:info:build cc -pipe -DNDEBUG -O2 -c -I../include seqsrc_readdb.c
2228	:info:build cc -pipe -DNDEBUG -O2 -c -I../include twoseq_api.c
2229	:info:build cc -pipe -DNDEBUG -O2 -c -I../include dust_filter.c
2230	:info:build cc -pipe -DNDEBUG -O2 -c -I../include blast_message_api.c
2231	:info:build rm -f libblastapi.a
2232	:info:build ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o hspstream_queue.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o
2233	:info:build cp -p libblastapi.a ../lib
2234	:info:build ranlib ../lib/libblastapi.a
2235	:info:build cc -pipe -o asntool -framework CoreServices -O2 -I../include -L../lib asntool.c asncode.c ../lib/libncbi.a -lc
2236	:info:build asncode.c:2371:9: warning: data argument not used by format string [-Wformat-extra-args]
2237	:info:build iter->stack->slot_name);
2238	:info:build ^
2239	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
2240	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
2241	:info:build ^~~~~~~~~~~
2242	:info:build asncode.c:2750:4: warning: data argument not used by format string [-Wformat-extra-args]
2243	:info:build right_outer->slot_name);
2244	:info:build ^
2245	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
2246	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
2247	:info:build ^~~~~~~~~~~
2248	:info:build asncode.c:2765:4: warning: data argument not used by format string [-Wformat-extra-args]
2249	:info:build right_outer->slot_name);
2250	:info:build ^
2251	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
2252	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
2253	:info:build ^~~~~~~~~~~
2254	:info:build asncode.c:3287:9: warning: add explicit braces to avoid dangling else [-Wdangling-else]
2255	:info:build } else if (now_atp->type->isa == CHOICE_TYPE) {
2256	:info:build ^
2257	:info:build asncode.c:3472:59: warning: format specifies type 'unsigned int' but the argument has type 'AsnCodeSpooledPtr' (aka 'struct struct_spooled *') [-Wformat]
2258	:info:build fprintf ((iter->acip -> bug_fp), "Dumping:%x<%s>\n", routine, TESTNIL (line->line));
2259	:info:build ~~ ^~~~~~~
2260	:info:build asncode.c:3509:69: warning: format specifies type 'unsigned int' but the argument has type 'AsnCodeSpooledPtr' (aka 'struct struct_spooled *') [-Wformat]
2261	:info:build fprintf ((iter->acip -> bug_fp), "Buf (%d):%x<%s>\n", lineno, iter->cur_routine, TESTNIL (iter->buf));
2262	:info:build ~~ ^~~~~~~~~~~~~~~~~
2263	:info:build asncode.c:4366:9: warning: add explicit braces to avoid dangling else [-Wdangling-else]
2264	:info:build } else {
2265	:info:build ^
2266	:info:build asncode.c:4639:88: warning: data argument not used by format string [-Wformat-extra-args]
2267	:info:build sprintf (iter->buf, "\treturn (Pointer) %sAsnRead (aip, atp);\n}\n\n", objnamemc, objnamemc);
2268	:info:build ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
2269	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
2270	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
2271	:info:build ^~~~~~~~~~~
2272	:info:build 8 warnings generated.
2273	:info:build cp -p asntool ../bin
2274	:info:build make -f makedemo.unx CFLAGS1="-DNDEBUG -O2 -c" LDFLAGS1="-framework CoreServices -O2" SHELL="/bin/sh" LCL="dwn" RAN="ranlib" AR="ar" CC="cc -pipe"
2275	:info:build ./ln-if-absent ../demo/. .
2276	:info:build ./ln-if-absent ../regexp/test/. .
2277	:info:build ./ln-if-absent ../regexp/demo/. .
2278	:info:build ./ln-if-absent ../internal/. .
2279	:info:build set: No match.
2280	:info:build make: [copy] Error 1 (ignored)
2281	:info:build chmod -R ug+rw,o+r .
2282	:info:build echo Waiting...go
2283	:info:build Waiting...go
2284	:info:build cc -pipe -o testcore -framework CoreServices -O2 -I../include -L../lib testcore.c -lncbi -lm
2285	:info:build testcore.c:326:34: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2286	:info:build sprintf(tbuf, "%ld", value);
2287	:info:build ~~~ ^~~~~
2288	:info:build %d
2289	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
2290	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
2291	:info:build ^~~~~~~~~~~
2292	:info:build 1 warning generated.
2293	:info:build cc -pipe -o makeset -framework CoreServices -O2 -I../include -L../lib makeset.c -lncbiobj -lncbi -lm
2294	:info:build cc -pipe -o getmesh -framework CoreServices -O2 -I../include -L../lib getmesh.c -lncbiobj -lncbi -lm
2295	:info:build cc -pipe -o indexpub -framework CoreServices -O2 -I../include -L../lib indexpub.c -lncbiobj -lncbi -lm
2296	:info:build indexpub.c:60:29: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2297	:info:build fprintf(fp, "%ld %ld\n", uid, seekptr);
2298	:info:build ~~~ ^~~
2299	:info:build %d
2300	:info:build indexpub.c:60:34: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2301	:info:build fprintf(fp, "%ld %ld\n", uid, seekptr);
2302	:info:build ~~~ ^~~~~~~
2303	:info:build %d
2304	:info:build 2 warnings generated.
2305	:info:build cc -pipe -o getpub -framework CoreServices -O2 -I../include -L../lib getpub.c -lncbiobj -lncbi -lm
2306	:info:build getpub.c:64:34: warning: format specifies type 'long ' but the argument has type 'Nlm_Int4 ' (aka 'int *') [-Wformat]
2307	:info:build retval = fscanf(fp, "%ld %ld", &uid, &seekptr);
2308	:info:build ~~~ ^~~~
2309	:info:build %d
2310	:info:build getpub.c:64:40: warning: format specifies type 'long ' but the argument has type 'Nlm_Int4 ' (aka 'int *') [-Wformat]
2311	:info:build retval = fscanf(fp, "%ld %ld", &uid, &seekptr);
2312	:info:build ~~~ ^~~~~~~~
2313	:info:build %d
2314	:info:build 2 warnings generated.
2315	:info:build cc -pipe -o testobj -framework CoreServices -O2 -I../include -L../lib testobj.c -lncbiobj -lncbi -lm
2316	:info:build cc -pipe -o seqtest -framework CoreServices -O2 -I../include -L../lib seqtest.c -lncbiobj -lncbi -lm
2317	:info:build seqtest.c:98:46: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2318	:info:build fprintf(fp, "len=%ld gaps=%ld segs=%ld\n", BioseqGetLen(seqlist[i]),
2319	:info:build ~~~ ^~~~~~~~~~~~~~~~~~~~~~~~
2320	:info:build %d
2321	:info:build seqtest.c:99:3: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2322	:info:build BioseqGetGaps(seqlist[i]), numseg);
2323	:info:build ^~~~~~~~~~~~~~~~~~~~~~~~~
2324	:info:build seqtest.c:99:30: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2325	:info:build BioseqGetGaps(seqlist[i]), numseg);
2326	:info:build ^~~~~~
2327	:info:build seqtest.c:103:34: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2328	:info:build fprintf(fp, " len = %ld\n", lens[j]);
2329	:info:build ~~~ ^~~~~~~
2330	:info:build %d
2331	:info:build 4 warnings generated.
2332	:info:build cc -pipe -o dosimple -framework CoreServices -O2 -I../include -L../lib dosimple.c -lncbiobj -lncbi -lm
2333	:info:build cc -pipe -o asn2ff -framework CoreServices -O2 -I../include -L../lib asn2ff.c -lncbiobj -lncbi -lm
2334	:info:build cc -pipe -o checksub -framework CoreServices -O2 -I../include -L../lib checksub.c -lncbiobj -lncbi -lm
2335	:info:build cc -pipe -o asndhuff -framework CoreServices -O2 -I../include -L../lib asndhuff.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm
2336	:info:build asndhuff.c:182:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2337	:info:build for (count=0; entry=CASN_NextMedlineEntry(casnh); ++count)
2338	:info:build ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2339	:info:build asndhuff.c:182:21: note: place parentheses around the assignment to silence this warning
2340	:info:build for (count=0; entry=CASN_NextMedlineEntry(casnh); ++count)
2341	:info:build ^
2342	:info:build ( )
2343	:info:build asndhuff.c:182:21: note: use '==' to turn this assignment into an equality comparison
2344	:info:build for (count=0; entry=CASN_NextMedlineEntry(casnh); ++count)
2345	:info:build ^
2346	:info:build ==
2347	:info:build asndhuff.c:221:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2348	:info:build for (count=0; entry=CASN_NextSeqEntry(casnh); ++count)
2349	:info:build ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2350	:info:build asndhuff.c:221:21: note: place parentheses around the assignment to silence this warning
2351	:info:build for (count=0; entry=CASN_NextSeqEntry(casnh); ++count)
2352	:info:build ^
2353	:info:build ( )
2354	:info:build asndhuff.c:221:21: note: use '==' to turn this assignment into an equality comparison
2355	:info:build for (count=0; entry=CASN_NextSeqEntry(casnh); ++count)
2356	:info:build ^
2357	:info:build ==
2358	:info:build 2 warnings generated.
2359	:info:build cc -pipe -o entrcmd -framework CoreServices -O2 -I../include -L../lib entrcmd.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm
2360	:info:build entrcmd.c:722:53: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2361	:info:build fprintf(exportFilePtr, "%ld\n", lsp->uids[i]);
2362	:info:build ~~~ ^~~~~~~~~~~~
2363	:info:build %d
2364	:info:build entrcmd.c:730:50: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2365	:info:build fprintf (master_fp, "%ld\n", lsp->uids[i]);
2366	:info:build ~~~ ^~~~~~~~~~~~
2367	:info:build %d
2368	:info:build entrcmd.c:773:70: warning: format specifies type 'int' but the argument has type 'long' [-Wformat]
2369	:info:build fprintf (master_fp, "out of %d total entries.<P>\n", totalCount);
2370	:info:build ~~ ^~~~~~~~~~
2371	:info:build %ld
2372	:info:build entrcmd.c:887:53: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2373	:info:build fprintf(exportFilePtr, "%ld\n", lsp->uids[i]);
2374	:info:build ~~~ ^~~~~~~~~~~~
2375	:info:build %d
2376	:info:build entrcmd.c:895:50: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2377	:info:build fprintf (master_fp, "%ld\n", lsp->uids[i]);
2378	:info:build ~~~ ^~~~~~~~~~~~
2379	:info:build %d
2380	:info:build entrcmd.c:915:70: warning: format specifies type 'int' but the argument has type 'long' [-Wformat]
2381	:info:build fprintf (master_fp, "out of %d total entries.<P>\n", totalCount);
2382	:info:build ~~ ^~~~~~~~~~
2383	:info:build %ld
2384	:info:build 6 warnings generated.
2385	:info:build cc -pipe -o errhdr -framework CoreServices -O2 -I../include -L../lib errhdr.c -lncbiobj -lncbi -lm
2386	:info:build errhdr.c:44:24: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size]
2387	:info:build strncat(mod,argv[i],sizeof mod);
2388	:info:build ^~~~~~~~~~
2389	:info:build errhdr.c:44:24: note: change the argument to be the free space in the destination buffer minus the terminating null byte
2390	:info:build strncat(mod,argv[i],sizeof mod);
2391	:info:build ^~~~~~~~~~
2392	:info:build sizeof(mod) - strlen(mod) - 1
2393	:info:build 1 warning generated.
2394	:info:build cc -pipe -o cdscan -framework CoreServices -O2 -I../include -L../lib cdscan.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm
2395	:info:build cc -pipe -o findspl -framework CoreServices -O2 -I../include -L../lib findspl.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm
2396	:info:build cc -pipe -o ncbisort -framework CoreServices -O2 -I../include -L../lib sortcmd.c -lncbitool -lblastcompadj \
2397	:info:build -lncbi -lm
2398	:info:build cc -pipe -o fa2htgs -framework CoreServices -O2 -I../include -L../lib fa2htgs.c -lncbiobj -lncbi -lm
2399	:info:build cc -pipe -o fastacmd -framework CoreServices -O2 -I../include -L../lib fastacmd.c -lncbitool -lblastcompadj \
2400	:info:build -lncbiobj -lncbi -lm
2401	:info:build cc -pipe -o formatdb -framework CoreServices -O2 -I../include -L../lib formatdb.c -lncbitool -lblastcompadj \
2402	:info:build -lncbiobj -lncbi -lm
2403	:info:build cc -pipe -o formatrpsdb -framework CoreServices -O2 -I../include -L../lib formatrpsdb.c -lblastapi -lncbitool \
2404	:info:build -lblastcompadj -lblast -lncbiobj -lncbi -lm
2405	:info:build cc -pipe -o blast -framework CoreServices -O2 -I../include -L../lib blast_driver.c -lblastapi \
2406	:info:build -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \
2407	:info:build
2408	:info:build cc -pipe -o blastall -framework CoreServices -O2 -I../include -L../lib blastall.c -lblastapi \
2409	:info:build -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi \
2410	:info:build -lm
2411	:info:build cc -pipe -o blastall_old -framework CoreServices -O2 -I../include -L../lib -DBLASTALL_TOOLS_ONLY blastall.c \
2412	:info:build -lncbitool -lblastcompadj -lncbiobj -lncbi \
2413	:info:build -lm
2414	:info:build cc -pipe -o blastpgp -framework CoreServices -O2 -I../include -L../lib blastpgp.c -lncbitool \
2415	:info:build -lblastcompadj -lncbiobj -lncbi -lm
2416	:info:build cc -pipe -o testval -framework CoreServices -O2 -I../include -L../lib testval.c -lncbiobj -lncbi -lm
2417	:info:build cc -pipe -o seedtop -framework CoreServices -O2 -I../include -L../lib seedtop.c -lncbitool \
2418	:info:build -lblastcompadj -lncbiobj -lncbi -lm
2419	:info:build seedtop.c:358:17: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2420	:info:build while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray,
2421	:info:build ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2422	:info:build seedtop.c:358:17: note: place parentheses around the assignment to silence this warning
2423	:info:build while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray,
2424	:info:build ^
2425	:info:build (
2426	:info:build seedtop.c:358:17: note: use '==' to turn this assignment into an equality comparison
2427	:info:build while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray,
2428	:info:build ^
2429	:info:build ==
2430	:info:build 1 warning generated.
2431	:info:build cc -pipe -o makemat -framework CoreServices -O2 -I../include -L../lib makemat.c -lncbitool \
2432	:info:build -lblastcompadj -lncbiobj -lncbi -lm
2433	:info:build cc -pipe -o copymat -framework CoreServices -O2 -I../include -L../lib copymat.c -lblast -lncbitool \
2434	:info:build -lblastcompadj -lncbiobj -lncbi -lm
2435	:info:build cc -pipe -o impala -framework CoreServices -O2 -I../include -L../lib profiles.c -lncbitool \
2436	:info:build -lblastcompadj -lncbiobj -lncbi -lm
2437	:info:build cc -pipe -o megablast -framework CoreServices -O2 -I../include -L../lib megablast.c -lblastapi \
2438	:info:build -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \
2439	:info:build
2440	:info:build cc -pipe -o vecscreen -framework CoreServices -O2 -I../include -L../lib vecscreen.c -lncbitool \
2441	:info:build -lblastcompadj -lncbiobj -lncbi -lm
2442	:info:build cc -pipe -o gil2bin -framework CoreServices -O2 -I../include -L../lib gil2bin.c -lncbitool -lblastcompadj \
2443	:info:build -lncbiobj -lncbi -lm
2444	:info:build gil2bin.c:73:33: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2445	:info:build fprintf(outfp, "%ld\n", gilist[i].gi);
2446	:info:build ~~~ ^~~~~~~~~~~~
2447	:info:build %d
2448	:info:build 1 warning generated.
2449	:info:build cc -pipe -o blastclust -framework CoreServices -O2 -I../include -L../lib blastclust.c -lncbitool \
2450	:info:build -lblastcompadj -lncbiobj -lncbi -lm
2451	:info:build blastclust.c:430:44: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2452	:info:build fprintf(global_fp, "%ld ", cluster[index]->elements[i]->gi);
2453	:info:build ~~~ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2454	:info:build %d
2455	:info:build blastclust.c:1064:19: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2456	:info:build if (tmpdir = getenv("TMPDIR")) {
2457	:info:build ~~~~~~~^~~~~~~~~~~~~~~~~~
2458	:info:build blastclust.c:1064:19: note: place parentheses around the assignment to silence this warning
2459	:info:build if (tmpdir = getenv("TMPDIR")) {
2460	:info:build ^
2461	:info:build ( )
2462	:info:build blastclust.c:1064:19: note: use '==' to turn this assignment into an equality comparison
2463	:info:build if (tmpdir = getenv("TMPDIR")) {
2464	:info:build ^
2465	:info:build ==
2466	:info:build blastclust.c:1230:47: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
2467	:info:build sprintf(id_list[i], "%ld", gi_list[i]);
2468	:info:build ~~~ ^~~~~~~~~~
2469	:info:build %d
2470	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
2471	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
2472	:info:build ^~~~~~~~~~~
2473	:info:build blastclust.c:1268:30: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2474	:info:build timestr, num_queries, first_seq);
2475	:info:build ^~~~~~~~~~~
2476	:info:build blastclust.c:1268:43: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2477	:info:build timestr, num_queries, first_seq);
2478	:info:build ^~~~~~~~~
2479	:info:build blastclust.c:1271:30: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2480	:info:build timestr, num_queries);
2481	:info:build ^~~~~~~~~~~
2482	:info:build blastclust.c:1331:31: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
2483	:info:build timestr, index+1);
2484	:info:build ^~~~~~~
2485	:info:build 7 warnings generated.
2486	:info:build cc -pipe -o rpsblast -framework CoreServices -O2 -I../include -L../lib rpsblast.c -lblastapi \
2487	:info:build -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \
2488	:info:build
2489	:info:build cc -pipe -o asn2xml -framework CoreServices -O2 -I../include -L../lib asn2xml.c -lncbiobj -lncbi -lm
2490	:info:build cc -pipe -o debruijn -framework CoreServices -O2 -I../include -L../lib debruijn.c -lblast -lncbi -lm
2491	:info:build debruijn.c:72:12: warning: assigning to 'Nlm_Uint1 ' (aka 'unsigned char ') from 'Nlm_CharPtr' (aka 'char *') converts between pointers to integer types with different sign [-Wpointer-sign]
2492	:info:build alphabet = myargs[1].strvalue;
2493	:info:build ^ ~~~~~~~~~~~~~~~~~~
2494	:info:build debruijn.c:80:14: warning: passing 'Nlm_Uint1 ' (aka 'unsigned char ') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
2495	:info:build k = strlen(alphabet);
2496	:info:build ^~~~~~~~
2497	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/string.h:82:28: note: passing argument to parameter '__s' here
2498	:info:build size_t strlen(const char *__s);
2499	:info:build ^
2500	:info:build debruijn.c:89:10: warning: assigning to 'Nlm_Uint1 ' (aka 'unsigned char ') from 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
2501	:info:build output = (char *) malloc(outputsize + 1);
2502	:info:build ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2503	:info:build debruijn.c:106:8: warning: passing 'Nlm_Uint1 ' (aka 'unsigned char ') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
2504	:info:build puts(output);
2505	:info:build ^~~~~~
2506	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:173:23: note: passing argument to parameter here
2507	:info:build int puts(const char *);
2508	:info:build ^
2509	:info:build debruijn.c:109:1: warning: non-void function does not return a value in all control paths [-Wreturn-type]
2510	:info:build }
2511	:info:build ^
2512	:info:build 5 warnings generated.
2513	:info:build cc -pipe -o asn2idx -framework CoreServices -O2 -I../include -L../lib asn2idx.c -lncbitool -lblastcompadj -lncbiobj \
2514	:info:build -lncbi -lm
2515	:info:build cc -pipe -o sortbyquote -framework CoreServices -O2 -I../include -L../lib sortbyquote.c -lncbiobj -lncbi -lm
2516	:info:build cc -pipe -o test_regexp -framework CoreServices -O2 -I../include -L../lib pcretest.c -lregexp
2517	:info:build pcretest.c:497:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
2518	:info:build size_offsets_max * sizeof(int));
2519	:info:build ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2520	:info:build pcretest.c:779:9: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat]
2521	:info:build size, gotten_store);
2522	:info:build ^~~~
2523	:info:build pcretest.c:779:15: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat]
2524	:info:build size, gotten_store);
2525	:info:build ^~~~~~~~~~~~
2526	:info:build pcretest.c:1021:15: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
2527	:info:build size_offsets_max * sizeof(int));
2528	:info:build ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2529	:info:build 4 warnings generated.
2530	:info:build cc -pipe -o demo_regexp -framework CoreServices -O2 -I../include -L../lib pcredemo.c -lregexp
2531	:info:build cc -pipe -o demo_regexp_grep -framework CoreServices -O2 -I../include -L../lib pcregrep.c -lregexp
2532	:info:build make -f makedemo.unx CFLAGS1="-DNDEBUG -O2 -c" LDFLAGS1="-framework CoreServices -O2" SHELL="/bin/sh" LCL="dwn" RAN="ranlib" AR="ar" CC="cc -pipe" THREAD_OBJ=ncbithr.o THREAD_OTHERLIBS="" blast blastall blastall_old blastpgp seedtop megablast rpsblast blastclust
2533	:info:build ./ln-if-absent ../demo/. .
2534	:info:build ./ln-if-absent ../regexp/test/. .
2535	:info:build ./ln-if-absent ../regexp/demo/. .
2536	:info:build ./ln-if-absent ../internal/. .
2537	:info:build set: No match.
2538	:info:build make: [copy] Error 1 (ignored)
2539	:info:build chmod -R ug+rw,o+r .
2540	:info:build cc -pipe -o blast -framework CoreServices -O2 -I../include -L../lib blast_driver.c ncbithr.o -lblastapi \
2541	:info:build -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \
2542	:info:build
2543	:info:build cc -pipe -o blastall -framework CoreServices -O2 -I../include -L../lib blastall.c ncbithr.o -lblastapi \
2544	:info:build -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi \
2545	:info:build -lm
2546	:info:build cc -pipe -o blastall_old -framework CoreServices -O2 -I../include -L../lib -DBLASTALL_TOOLS_ONLY blastall.c \
2547	:info:build ncbithr.o -lncbitool -lblastcompadj -lncbiobj -lncbi \
2548	:info:build -lm
2549	:info:build cc -pipe -o blastpgp -framework CoreServices -O2 -I../include -L../lib blastpgp.c ncbithr.o -lncbitool \
2550	:info:build -lblastcompadj -lncbiobj -lncbi -lm
2551	:info:build cc -pipe -o seedtop -framework CoreServices -O2 -I../include -L../lib seedtop.c ncbithr.o -lncbitool \
2552	:info:build -lblastcompadj -lncbiobj -lncbi -lm
2553	:info:build seedtop.c:358:17: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2554	:info:build while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray,
2555	:info:build ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2556	:info:build seedtop.c:358:17: note: place parentheses around the assignment to silence this warning
2557	:info:build while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray,
2558	:info:build ^
2559	:info:build (
2560	:info:build seedtop.c:358:17: note: use '==' to turn this assignment into an equality comparison
2561	:info:build while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray,
2562	:info:build ^
2563	:info:build ==
2564	:info:build 1 warning generated.
2565	:info:build cc -pipe -o megablast -framework CoreServices -O2 -I../include -L../lib megablast.c ncbithr.o -lblastapi \
2566	:info:build -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \
2567	:info:build
2568	:info:build cc -pipe -o rpsblast -framework CoreServices -O2 -I../include -L../lib rpsblast.c ncbithr.o -lblastapi \
2569	:info:build -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \
2570	:info:build
2571	:info:build cc -pipe -o blastclust -framework CoreServices -O2 -I../include -L../lib blastclust.c ncbithr.o -lncbitool \
2572	:info:build -lblastcompadj -lncbiobj -lncbi -lm
2573	:info:build blastclust.c:430:44: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2574	:info:build fprintf(global_fp, "%ld ", cluster[index]->elements[i]->gi);
2575	:info:build ~~~ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2576	:info:build %d
2577	:info:build blastclust.c:1064:19: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2578	:info:build if (tmpdir = getenv("TMPDIR")) {
2579	:info:build ~~~~~~~^~~~~~~~~~~~~~~~~~
2580	:info:build blastclust.c:1064:19: note: place parentheses around the assignment to silence this warning
2581	:info:build if (tmpdir = getenv("TMPDIR")) {
2582	:info:build ^
2583	:info:build ( )
2584	:info:build blastclust.c:1064:19: note: use '==' to turn this assignment into an equality comparison
2585	:info:build if (tmpdir = getenv("TMPDIR")) {
2586	:info:build ^
2587	:info:build ==
2588	:info:build blastclust.c:1230:47: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
2589	:info:build sprintf(id_list[i], "%ld", gi_list[i]);
2590	:info:build ~~~ ^~~~~~~~~~
2591	:info:build %d
2592	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
2593	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
2594	:info:build ^~~~~~~~~~~
2595	:info:build blastclust.c:1268:30: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2596	:info:build timestr, num_queries, first_seq);
2597	:info:build ^~~~~~~~~~~
2598	:info:build blastclust.c:1268:43: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2599	:info:build timestr, num_queries, first_seq);
2600	:info:build ^~~~~~~~~
2601	:info:build blastclust.c:1271:30: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2602	:info:build timestr, num_queries);
2603	:info:build ^~~~~~~~~~~
2604	:info:build blastclust.c:1331:31: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
2605	:info:build timestr, index+1);
2606	:info:build ^~~~~~~
2607	:info:build 7 warnings generated.
2608	:info:build make -f makenet.unx CFLAGS1="-DNDEBUG -O2 -c " LDFLAGS1="-framework CoreServices -O2" SHELL="/bin/sh" AR="ar" CC="cc -pipe" RAN="ranlib" OTHERLIBS="-lc" THREAD_OBJ=ncbithr.o THREAD_OTHERLIBS="" NETENTREZVERSION="2.02c2ASN1SPEC6 " VIB="blastcl3 idfetch bl2seq asn2gb tbl2asn gene2xml nph-viewgif.cgi wblast2.REAL wblast2_cs.REAL bl2bag.cgi "
2609	:info:build ./ln-if-absent ../connect/test/*.c .
2610	:info:build ./ln-if-absent ../network/entrez/client/*.h ../include
2611	:info:build ./ln-if-absent ../network/entrez/client/*.c .
2612	:info:build ./ln-if-absent ../network/medarch/client/*.h ../include
2613	:info:build ./ln-if-absent ../network/medarch/client/*.c .
2614	:info:build ./ln-if-absent ../network/taxonomy/client/*.h ../include
2615	:info:build set: No match.
2616	:info:build make: [copy] Error 1 (ignored)
2617	:info:build ./ln-if-absent ../network/taxonomy/client/*.c .
2618	:info:build set: No match.
2619	:info:build make: [copy] Error 1 (ignored)
2620	:info:build ./ln-if-absent ../network/taxon1/common/*.h ../include
2621	:info:build ./ln-if-absent ../network/taxon1/common/*.c .
2622	:info:build ./ln-if-absent ../network/taxon1/taxon2/*.h ../include
2623	:info:build ./ln-if-absent ../network/taxon1/taxon2/*.c .
2624	:info:build ./ln-if-absent ../network/id0arch/client/*.h ../include
2625	:info:build set: No match.
2626	:info:build make: [copy] Error 1 (ignored)
2627	:info:build ./ln-if-absent ../network/id0arch/client/*.c .
2628	:info:build set: No match.
2629	:info:build make: [copy] Error 1 (ignored)
2630	:info:build ./ln-if-absent ../network/id1arch/*.h ../include
2631	:info:build ./ln-if-absent ../network/id1arch/*.c .
2632	:info:build ./ln-if-absent ../network/id2arch/*.h ../include
2633	:info:build ./ln-if-absent ../network/id2arch/*.c .
2634	:info:build ./ln-if-absent ../network/spell/client/*.h ../include
2635	:info:build ./ln-if-absent ../network/spell/client/*.c .
2636	:info:build ./ln-if-absent ../network/suggest/client/*.h ../include
2637	:info:build ./ln-if-absent ../network/suggest/client/*.c .
2638	:info:build ./ln-if-absent ../network/blast3/client/*.h ../include
2639	:info:build ./ln-if-absent ../network/blast3/client/*.c .
2640	:info:build ./ln-if-absent ../tools/taxblast.h ../include
2641	:info:build ./ln-if-absent ../tools/taxblast.c .
2642	:info:build ./ln-if-absent /*.c .
2643	:info:build set: No match.
2644	:info:build make: [copy] Error 1 (ignored)
2645	:info:build ./ln-if-absent ../internal/misc/*.c .
2646	:info:build set: No match.
2647	:info:build make: [copy] Error 1 (ignored)
2648	:info:build ./ln-if-absent ../internal/misc/*.h ../include
2649	:info:build set: No match.
2650	:info:build make: [copy] Error 1 (ignored)
2651	:info:build ./ln-if-absent ../internal/ssparse/*.c .
2652	:info:build set: No match.
2653	:info:build make: [copy] Error 1 (ignored)
2654	:info:build ./ln-if-absent ../internal/ssparse/*.h ../include
2655	:info:build set: No match.
2656	:info:build make: [copy] Error 1 (ignored)
2657	:info:build ./ln-if-absent ../internal/libparsn/*.c .
2658	:info:build set: No match.
2659	:info:build make: [copy] Error 1 (ignored)
2660	:info:build ./ln-if-absent ../internal/libparsn/*.h ../include
2661	:info:build set: No match.
2662	:info:build make: [copy] Error 1 (ignored)
2663	:info:build ./ln-if-absent ../internal/smart/smartnet/*.c .
2664	:info:build set: No match.
2665	:info:build make: [copy] Error 1 (ignored)
2666	:info:build ./ln-if-absent ../internal/smart/smartnet/*.h ../include
2667	:info:build set: No match.
2668	:info:build make: [copy] Error 1 (ignored)
2669	:info:build ./ln-if-absent ../internal/www/*.c .
2670	:info:build set: No match.
2671	:info:build make: [copy] Error 1 (ignored)
2672	:info:build ./ln-if-absent ../internal/www/*.h ../include
2673	:info:build set: No match.
2674	:info:build make: [copy] Error 1 (ignored)
2675	:info:build ./ln-if-absent ../internal/query/*.c .
2676	:info:build set: No match.
2677	:info:build make: [copy] Error 1 (ignored)
2678	:info:build ./ln-if-absent ../internal/query/*.h ../include
2679	:info:build set: No match.
2680	:info:build make: [copy] Error 1 (ignored)
2681	:info:build ./ln-if-absent ../network/sybutils/ctlib/*.c .
2682	:info:build set: No match.
2683	:info:build make: [copy] Error 1 (ignored)
2684	:info:build ./ln-if-absent ../network/sybutils/ctlib/*.h ../include
2685	:info:build set: No match.
2686	:info:build make: [copy] Error 1 (ignored)
2687	:info:build ./ln-if-absent ../network/sybutils/oslib/*.c .
2688	:info:build set: No match.
2689	:info:build make: [copy] Error 1 (ignored)
2690	:info:build ./ln-if-absent ../network/sybutils/oslib/*.h ../include
2691	:info:build set: No match.
2692	:info:build make: [copy] Error 1 (ignored)
2693	:info:build ./ln-if-absent ../network/sybutils/idloadlib/*.c .
2694	:info:build set: No match.
2695	:info:build make: [copy] Error 1 (ignored)
2696	:info:build ./ln-if-absent ../network/sybutils/idloadlib/*.h ../include
2697	:info:build set: No match.
2698	:info:build make: [copy] Error 1 (ignored)
2699	:info:build ./ln-if-absent ../network/nsclilib/*.h ../include
2700	:info:build ./ln-if-absent ../network/nsclilib/*.c .
2701	:info:build ./ln-if-absent ../network/vibnet/*.c .
2702	:info:build ./ln-if-absent ../network/vibnet/*.h ../include
2703	:info:build ./ln-if-absent ../cdromlib/*.h ../include
2704	:info:build ./ln-if-absent ../network/wwwblast/Src/*.c .
2705	:info:build ./ln-if-absent ../network/wwwblast/Src/*.h ../include
2706	:info:build ./ln-if-absent ../cdromlib/accentr.c .
2707	:info:build ./ln-if-absent ../cdromlib/accutils.c .
2708	:info:build ./ln-if-absent ../sequin/. .
2709	:info:build ./ln-if-absent ../demo/entrez.c .
2710	:info:build ./ln-if-absent ../demo/seqget.c .
2711	:info:build ./ln-if-absent ../demo/entrcmd.c .
2712	:info:build ./ln-if-absent ../demo/batch.c .
2713	:info:build ./ln-if-absent ../demo/qbatch.c .
2714	:info:build ./ln-if-absent ../demo/elecpcr.c .
2715	:info:build ./ln-if-absent ../demo/asn2fast.c .
2716	:info:build ./ln-if-absent ../demo/asn2asn.c .
2717	:info:build ./ln-if-absent ../demo/cleanasn.c .
2718	:info:build ./ln-if-absent ../demo/cspeedtest.c .
2719	:info:build ./ln-if-absent ../demo/fetchent.c .
2720	:info:build ./ln-if-absent ../demo/udvmain.c .
2721	:info:build ./ln-if-absent ../demo/rtestval.c .
2722	:info:build ./ln-if-absent ../demo/asn2ff.c .
2723	:info:build ./ln-if-absent ../demo/asn2gb.c .
2724	:info:build ./ln-if-absent ../demo/asn2fsa.c .
2725	:info:build ./ln-if-absent ../demo/asn2all.c .
2726	:info:build ./ln-if-absent ../demo/gene2xml.c .
2727	:info:build ./ln-if-absent ../demo/asnval.c .
2728	:info:build ./ln-if-absent ../demo/asndisc.c .
2729	:info:build ./ln-if-absent ../demo/asnmacro.c .
2730	:info:build ./ln-if-absent ../demo/asnstrip.c .
2731	:info:build ./ln-if-absent ../demo/tbl2asn.c .
2732	:info:build ./ln-if-absent ../demo/raw2delt.c .
2733	:info:build ./ln-if-absent ../demo/flint.c .
2734	:info:build ./ln-if-absent ../demo/gbseqget.c .
2735	:info:build ./ln-if-absent ../demo/insdseqget.c .
2736	:info:build ./ln-if-absent ../demo/nps2gps.c .
2737	:info:build ./ln-if-absent ../demo/testent2.c .
2738	:info:build ./ln-if-absent ../demo/trna2sap.c .
2739	:info:build ./ln-if-absent ../demo/trna2tbl.c .
2740	:info:build ./ln-if-absent ../demo/entrez2.c .
2741	:info:build ./ln-if-absent ../demo/condense.c .
2742	:info:build ./ln-if-absent ../demo/spideymain.c .
2743	:info:build ./ln-if-absent ../demo/dotmain.c .
2744	:info:build ./ln-if-absent ../demo/ingenmain.c .
2745	:info:build ./ln-if-absent ../demo/bl2seq.c .
2746	:info:build ./ln-if-absent ../demo/blastall.c .
2747	:info:build ./ln-if-absent ../demo/blast_driver.c .
2748	:info:build ./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c .
2749	:info:build ./ln-if-absent ../network/entrez/server/. .
2750	:info:build set: No match.
2751	:info:build make: [copy] Error 1 (ignored)
2752	:info:build ./ln-if-absent ../network/suggest/server/. .
2753	:info:build chmod -R ug+rw,o+r .
2754	:info:build echo Waiting...go
2755	:info:build Waiting...go
2756	:info:build cc -pipe -DNDEBUG -O2 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_lib_.c
2757	:info:build cc -pipe -DNDEBUG -O2 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c
2758	:info:build cc -pipe -DNDEBUG -O2 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c
2759	:info:build cc -pipe -DNDEBUG -O2 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c
2760	:info:build rm -f libnetcli.a
2761	:info:build ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o
2762	:info:build cp -p libnetcli.a ../lib
2763	:info:build ranlib ../lib/libnetcli.a
2764	:info:build cc -pipe -DNDEBUG -O2 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c
2765	:info:build netentr.c:798:5: warning: '/*' within block comment [-Wcomment]
2766	:info:build /MsgSetReadTimeout(Entrez_ni, 60);/
2767	:info:build ^
2768	:info:build netentr.c:2359:12: warning: expression which evaluates to zero treated as a null pointer constant of type 'EntrezHierarchyPtr' (aka 'struct EntrezHierarchy *') [-Wnon-literal-null-conversion]
2769	:info:build return FALSE;
2770	:info:build ^~~~~
2771	:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
2772	:info:build #define FALSE ((Nlm_Boolean)0)
2773	:info:build ^~~~~~~~~~~~~~~~
2774	:info:build 2 warnings generated.
2775	:info:build cc -pipe -DNDEBUG -O2 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c
2776	:info:build cc -pipe -DNDEBUG -O2 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c
2777	:info:build rm -f libnetentr.a
2778	:info:build ar cru libnetentr.a netentr.o netlib.o objneten.o
2779	:info:build cp -p libnetentr.a ../lib
2780	:info:build ranlib ../lib/libnetentr.a
2781	:info:build ./ln-if-absent accentr.c Naccentr.c
2782	:info:build cc -pipe -DNDEBUG -O2 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c
2783	:info:build rm -f libncbiNacc.a
2784	:info:build ar cru libncbiNacc.a Naccentr.o accutils.o
2785	:info:build cp -p libncbiNacc.a ../lib
2786	:info:build ranlib ../lib/libncbiNacc.a
2787	:info:build ./ln-if-absent accentr.c Caccentr.c
2788	:info:build cc -pipe -DNDEBUG -O2 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c
2789	:info:build rm -f libncbiCacc.a
2790	:info:build ar cru libncbiCacc.a Caccentr.o accutils.o
2791	:info:build cp -p libncbiCacc.a ../lib
2792	:info:build ranlib ../lib/libncbiCacc.a
2793	:info:build cc -pipe -DNDEBUG -O2 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c
2794	:info:build cc -pipe -DNDEBUG -O2 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c
2795	:info:build rm -f libnetblast.a
2796	:info:build ar cru libnetblast.a objblst3.o netblap3.o
2797	:info:build cp -p libnetblast.a ../lib
2798	:info:build ranlib ../lib/libnetblast.a
2799	:info:build cc -pipe -g -o blastcl3 -framework CoreServices -O2 -I../include -L../lib -DBLAST_CS_API blastall.c \
2800	:info:build -lblastapi -lblast -lnetblast -lncbitool -lblastcompadj \
2801	:info:build -lnetcli -lncbiobj -lncbi -lc
2802	:info:build cc -pipe -DNDEBUG -O2 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c
2803	:info:build cc -pipe -DNDEBUG -O2 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c
2804	:info:build id1arch.c:563:47: warning: incomplete format specifier [-Wformat]
2805	:info:build fprintf(fp,"%-20d%-20s%",old_gi,repl_date);
2806	:info:build ^
2807	:info:build 1 warning generated.
2808	:info:build cc -pipe -DNDEBUG -O2 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c
2809	:info:build rm -f libncbiid1.a
2810	:info:build ar cru libncbiid1.a id1gen.o id1arch.o accid1.o
2811	:info:build cp -p libncbiid1.a ../lib
2812	:info:build ranlib ../lib/libncbiid1.a
2813	:info:build cc -pipe -g -o idfetch -framework CoreServices -O2 -I../include -L../lib idfetch.c -lncbiid1 -lnetcli -lncbiobj -lncbi -lc
2814	:info:build idfetch.c:1439:38: warning: format specifies type 'short' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2815	:info:build sprintf( pFormat, "%%s%%0%hdhd", DigitsStart);
2816	:info:build ~~~ ^~~~~~~~~~~
2817	:info:build %d
2818	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
2819	:info:build __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
2820	:info:build ^~~~~~~~~~~
2821	:info:build 1 warning generated.
2822	:info:build cc -pipe -o bl2seq -framework CoreServices -O2 -I../include -L../lib bl2seq.c -lblastapi -lblast -lncbitool \
2823	:info:build -lblastcompadj -lncbiid1 -lnetcli -lncbiobj -lncbi \
2824	:info:build -lc
2825	:info:build cc -pipe -g -o asn2gb -framework CoreServices -O2 -I../include -L../lib asn2gb.c -lncbiid1 -lnetcli \
2826	:info:build -lncbitool -lblastcompadj -lncbiobj -lncbi -lc
2827	:info:build cc -pipe -o tbl2asn -framework CoreServices -O2 -I../include -L../lib tbl2asn.c -lncbitool -lblastcompadj \
2828	:info:build -lncbiobj -lnetcli -lncbi -lc
2829	:info:build cc -pipe -g -o gene2xml -framework CoreServices -O2 -I../include -L../lib gene2xml.c -lnetcli -lncbiobj -lncbi -lc
2830	:info:build cc -pipe -o nph-viewgif.cgi -framework CoreServices -O2 -I../include -L../lib viewgif.c
2831	:info:build viewgif.c:85:9: error: implicit declaration of function 'write' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
2832	:info:build write(1, tmp_buff, strlen(tmp_buff));
2833	:info:build ^
2834	:info:build viewgif.c:85:9: note: did you mean 'fwrite'?
2835	:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:165:9: note: 'fwrite' declared here
2836	:info:build size_t fwrite(const void * __restrict __ptr, size_t __size, size_t __nitems, FILE * __restrict __stream) __DARWIN_ALIAS(fwrite);
2837	:info:build ^
2838	:info:build viewgif.c:94:9: error: implicit declaration of function 'write' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
2839	:info:build write(1, tmp_buff, strlen(tmp_buff));
2840	:info:build ^
2841	:info:build viewgif.c:115:5: error: implicit declaration of function 'write' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
2842	:info:build write(1, tmp_buff, strlen(tmp_buff));
2843	:info:build ^
2844	:info:build 3 errors generated.
2845	:info:build make: *** [nph-viewgif.cgi] Error 1
2846	:info:build FAILURE primary make status = 0, demo = 0, threaded_demo = 0, net = 2
2847	:info:build #######
2848	:info:build # ##### ##### #### #####
2849	:info:build # # # # # # # # #
2850	:info:build ##### # # # # # # # #
2851	:info:build # ##### ##### # # #####
2852	:info:build # # # # # # # # #
2853	:info:build ####### # # # # #### # #
2854	:info:build Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302" && './ncbi/make/makedis.csh'
2855	:info:build Exit code: 1
2856	:error:build Failed to build ncbi_tools: command execution failed
2857	:debug:build Error code: CHILDSTATUS 30858 1
2858	:debug:build Backtrace: command execution failed
2859	:debug:build while executing
2860	:debug:build "system {}$notty {}$nice $fullcmdstring"
2861	:debug:build invoked from within
2862	:debug:build "command_exec build"
2863	:debug:build (procedure "portbuild::build_main" line 8)
2864	:debug:build invoked from within
2865	:debug:build "$procedure $targetname"
2866	:error:build See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/main.log for details.

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