| 1 | version:1 |
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| 2 | :debug:clean Starting logging for R @4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11 |
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| 3 | :debug:sysinfo macOS 11.6.7 (darwin/20.6.0) arch i386 |
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| 4 | :debug:sysinfo MacPorts 2.7.2 |
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| 5 | :debug:sysinfo Xcode 13.2.1 |
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| 6 | :debug:sysinfo SDK 11 |
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| 7 | :debug:sysinfo MACOSX_DEPLOYMENT_TARGET: 11.0 |
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| 8 | :msg:clean ---> Computing dependencies for R:info:clean .:debug:clean R has no conflicts |
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| 9 | :debug:clean Searching for dependency: pkgconfig |
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| 10 | :debug:clean Found Dependency: receipt exists for pkgconfig |
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| 11 | :debug:clean Searching for dependency: gcc12 |
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| 12 | :debug:clean Found Dependency: receipt exists for gcc12 |
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| 13 | :debug:clean Searching for dependency: clang-14 |
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| 14 | :debug:clean Found Dependency: receipt exists for clang-14 |
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| 15 | :debug:clean Searching for dependency: readline |
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| 16 | :debug:clean Found Dependency: receipt exists for readline |
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| 17 | :debug:clean Searching for dependency: icu |
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| 18 | :debug:clean Found Dependency: receipt exists for icu |
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| 19 | :debug:clean Searching for dependency: libiconv |
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| 20 | :debug:clean Found Dependency: receipt exists for libiconv |
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| 21 | :debug:clean Searching for dependency: zlib |
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| 22 | :debug:clean Found Dependency: receipt exists for zlib |
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| 23 | :debug:clean Searching for dependency: pcre |
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| 24 | :debug:clean Found Dependency: receipt exists for pcre |
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| 25 | :debug:clean Searching for dependency: pcre2 |
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| 26 | :debug:clean Found Dependency: receipt exists for pcre2 |
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| 27 | :debug:clean Searching for dependency: libjpeg-turbo |
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| 28 | :debug:clean Found Dependency: receipt exists for libjpeg-turbo |
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| 29 | :debug:clean Searching for dependency: tiff |
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| 30 | :debug:clean Found Dependency: receipt exists for tiff |
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| 31 | :debug:clean Searching for dependency: libpng |
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| 32 | :debug:clean Found Dependency: receipt exists for libpng |
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| 33 | :debug:clean Searching for dependency: curl |
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| 34 | :debug:clean Found Dependency: receipt exists for curl |
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| 35 | :debug:clean Searching for dependency: less |
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| 36 | :debug:clean Found Dependency: receipt exists for less |
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| 37 | :debug:clean Searching for dependency: texinfo |
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| 38 | :debug:clean Found Dependency: receipt exists for texinfo |
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| 39 | :debug:clean Searching for dependency: bzip2 |
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| 40 | :debug:clean Found Dependency: receipt exists for bzip2 |
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| 41 | :debug:clean Searching for dependency: gzip |
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| 42 | :debug:clean Found Dependency: receipt exists for gzip |
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| 43 | :debug:clean Searching for dependency: zip |
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| 44 | :debug:clean Found Dependency: receipt exists for zip |
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| 45 | :debug:clean Searching for dependency: unzip |
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| 46 | :debug:clean Found Dependency: receipt exists for unzip |
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| 47 | :debug:clean Searching for dependency: gnutar |
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| 48 | :debug:clean Found Dependency: receipt exists for gnutar |
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| 49 | :debug:clean Searching for dependency: xz |
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| 50 | :debug:clean Found Dependency: receipt exists for xz |
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| 51 | :debug:clean Searching for dependency: libgcc |
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| 52 | :debug:clean Found Dependency: receipt exists for libgcc |
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| 53 | :debug:clean Searching for dependency: cairo |
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| 54 | :debug:clean Found Dependency: receipt exists for cairo |
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| 55 | :debug:clean Searching for dependency: pango |
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| 56 | :debug:clean Found Dependency: receipt exists for pango |
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| 57 | :debug:clean Searching for dependency: glib2 |
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| 58 | :debug:clean Found Dependency: receipt exists for glib2 |
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| 59 | :debug:clean Searching for dependency: freetype |
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| 60 | :debug:clean Found Dependency: receipt exists for freetype |
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| 61 | :debug:clean Searching for dependency: fontconfig |
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| 62 | :debug:clean Found Dependency: receipt exists for fontconfig |
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| 63 | :debug:clean Searching for dependency: gettext-runtime |
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| 64 | :debug:clean Found Dependency: receipt exists for gettext-runtime |
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| 65 | :debug:clean Searching for dependency: xorg-libsm |
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| 66 | :debug:clean Found Dependency: receipt exists for xorg-libsm |
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| 67 | :debug:clean Searching for dependency: xorg-libice |
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| 68 | :debug:clean Found Dependency: receipt exists for xorg-libice |
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| 69 | :debug:clean Searching for dependency: xorg-libX11 |
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| 70 | :debug:clean Found Dependency: receipt exists for xorg-libX11 |
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| 71 | :debug:clean Searching for dependency: xorg-libXt |
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| 72 | :debug:clean Found Dependency: receipt exists for xorg-libXt |
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| 73 | :debug:clean Searching for dependency: libomp |
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| 74 | :debug:clean Found Dependency: receipt exists for libomp |
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| 75 | :debug:main Executing org.macports.main (R) |
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| 76 | :debug:main dropping privileges: euid changed to 506, egid changed to 505. |
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| 77 | :debug:archivefetch archivefetch phase started at Fri Jul 22 10:24:44 EDT 2022 |
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| 78 | :msg:archivefetch ---> Fetching archive for R |
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| 79 | :debug:archivefetch Executing proc-pre-org.macports.archivefetch-archivefetch-0 |
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| 80 | :debug:archivefetch Executing org.macports.archivefetch (R) |
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| 81 | :debug:archivefetch euid/egid changed to: 0/0 |
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| 82 | :debug:archivefetch chowned /opt/local/var/macports/incoming to macports |
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| 83 | :debug:archivefetch euid/egid changed to: 506/505 |
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| 84 | :info:archivefetch ---> R-4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11.darwin_20.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified |
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| 85 | :msg:archivefetch ---> Attempting to fetch R-4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11.darwin_20.x86_64.tbz2 from https://packages.macports.org/R |
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| 86 | :debug:archivefetch Fetching archive failed: The requested URL returned error: 404 |
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| 87 | :msg:archivefetch ---> Attempting to fetch R-4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11.darwin_20.x86_64.tbz2 from https://ywg.ca.packages.macports.org/mirror/macports/packages/R |
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| 88 | :debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found |
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| 89 | :msg:archivefetch ---> Attempting to fetch R-4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11.darwin_20.x86_64.tbz2 from https://mse.uk.packages.macports.org/R |
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| 90 | :debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found |
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| 91 | :debug:archivefetch Privilege de-escalation not attempted as not running as root. |
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| 92 | :debug:fetch fetch phase started at Fri Jul 22 10:24:47 EDT 2022 |
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| 93 | :notice:fetch ---> Fetching distfiles for R |
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| 94 | :debug:fetch elevating privileges for fetch: euid changed to 0, egid changed to 0. |
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| 95 | :debug:fetch dropping privileges: euid changed to 506, egid changed to 505. |
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| 96 | :debug:fetch Executing proc-pre-org.macports.fetch-fetch-0 |
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| 97 | :debug:fetch Executing org.macports.fetch (R) |
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| 98 | :info:fetch ---> R-4.2.1.tar.gz does not exist in /opt/local/var/macports/distfiles/R |
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| 99 | :notice:fetch ---> Attempting to fetch R-4.2.1.tar.gz from https://distfiles.macports.org/R |
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| 100 | :debug:fetch Privilege de-escalation not attempted as not running as root. |
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| 101 | :debug:checksum checksum phase started at Fri Jul 22 10:24:52 EDT 2022 |
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| 102 | :notice:checksum ---> Verifying checksums for R |
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| 103 | :debug:checksum Executing org.macports.checksum (R) |
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| 104 | :info:checksum ---> Checksumming R-4.2.1.tar.gz |
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| 105 | :debug:checksum Calculated (rmd160) is e0402470745998c4a41bf9ec0a57634cb7522175 |
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| 106 | :debug:checksum Correct (rmd160) checksum for R-4.2.1.tar.gz |
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| 107 | :debug:checksum Calculated (sha256) is 4d52db486d27848e54613d4ee977ad952ec08ce17807e1b525b10cd4436c643f |
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| 108 | :debug:checksum Correct (sha256) checksum for R-4.2.1.tar.gz |
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| 109 | :debug:checksum Calculated (size) is 37601544 |
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| 110 | :debug:checksum Correct (size) checksum for R-4.2.1.tar.gz |
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| 111 | :debug:checksum Privilege de-escalation not attempted as not running as root. |
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| 112 | :debug:extract extract phase started at Fri Jul 22 10:24:53 EDT 2022 |
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| 113 | :notice:extract ---> Extracting R |
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| 114 | :debug:extract Executing org.macports.extract (R) |
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| 115 | :info:extract ---> Extracting R-4.2.1.tar.gz |
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| 116 | :debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/R/R-4.2.1.tar.gz' |
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| 117 | :debug:extract Environment: |
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| 118 | :debug:extract CC_PRINT_OPTIONS='YES' |
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| 119 | :debug:extract CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/.CC_PRINT_OPTIONS' |
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| 120 | :debug:extract CPATH='/opt/local/include' |
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| 121 | :debug:extract DEVELOPER_DIR='/Library/Developer/CommandLineTools' |
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| 122 | :debug:extract LIBRARY_PATH='/opt/local/lib' |
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| 123 | :debug:extract MACOSX_DEPLOYMENT_TARGET='11.0' |
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| 124 | :debug:extract SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk' |
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| 125 | :info:extract Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/R/R-4.2.1.tar.gz' | /usr/bin/tar -xf - |
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| 126 | :debug:extract system: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/R/R-4.2.1.tar.gz' | /usr/bin/tar -xf - |
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| 127 | :debug:extract euid/egid changed to: 0/0 |
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| 128 | :debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work to macports |
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| 129 | :debug:extract euid/egid changed to: 506/505 |
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| 130 | :debug:extract Privilege de-escalation not attempted as not running as root. |
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| 131 | :debug:patch patch phase started at Fri Jul 22 10:24:55 EDT 2022 |
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| 132 | :debug:patch Executing org.macports.patch (R) |
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| 133 | :debug:patch Executing proc-post-org.macports.patch-patch-0 |
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| 134 | :info:patch ---> Patching Rscript.c: s|R_HOME|"/opt/local/Library/Frameworks/R.framework/Versions/4.2/Resources"| |
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| 135 | :debug:patch Executing reinplace: /usr/bin/sed s|R_HOME|\"/opt/local/Library/Frameworks/R.framework/Versions/4.2/Resources\"| </opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1/src/unix/Rscript.c >@file17 |
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| 136 | :debug:patch euid/egid changed to: 0/0 |
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| 137 | :debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1/src/unix/Rscript.c to macports |
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| 138 | :debug:patch euid/egid changed to: 506/505 |
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| 139 | :debug:patch euid/egid changed to: 0/0 |
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| 140 | :debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1/src/unix/Rscript.c |
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| 141 | :debug:patch euid/egid changed to: 506/505 |
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| 142 | :info:patch ---> Patching Defn.h: s|<libintl.h>|"libintl.h"| |
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| 143 | :debug:patch Executing reinplace: /usr/bin/sed s|<libintl.h>|\"libintl.h\"| </opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1/src/include/Defn.h >@file17 |
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| 144 | :debug:patch euid/egid changed to: 0/0 |
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| 145 | :debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1/src/include/Defn.h to macports |
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| 146 | :debug:patch euid/egid changed to: 506/505 |
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| 147 | :debug:patch euid/egid changed to: 0/0 |
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| 148 | :debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1/src/include/Defn.h |
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| 149 | :debug:patch euid/egid changed to: 506/505 |
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| 150 | :debug:patch Privilege de-escalation not attempted as not running as root. |
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| 151 | :debug:configure configure phase started at Fri Jul 22 10:24:56 EDT 2022 |
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| 152 | :notice:configure ---> Configuring R |
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| 153 | :debug:configure Preferred compilers: macports-clang-14 macports-clang-13 macports-clang-12 macports-clang-11 macports-clang-10 macports-clang-9.0 |
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| 154 | :debug:configure Using compiler 'MacPorts Clang 14' |
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| 155 | :debug:configure Executing proc-pre-org.macports.configure-configure-0 |
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| 156 | :debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: readline icu libiconv zlib pcre pcre2 libjpeg-turbo tiff libpng curl less texinfo bzip2 gzip zip unzip gnutar xz libgcc cairo pango glib2 freetype fontconfig gettext-runtime xorg-libsm xorg-libice xorg-libX11 xorg-libXt libomp pkgconfig gcc12 clang-14 |
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| 157 | :debug:configure Checking cairo for active variants for depspec 'path:lib/pkgconfig/cairo.pc:cairo' |
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| 158 | :debug:configure cairo is installed with the following variants: +quartz+x11 |
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| 159 | :debug:configure required: x11, forbidden: |
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| 160 | :debug:configure accepted |
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| 161 | :debug:configure Checking pango for active variants for depspec 'path:lib/pkgconfig/pango.pc:pango' |
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| 162 | :debug:configure pango is installed with the following variants: +quartz+x11 |
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| 163 | :debug:configure required: x11, forbidden: |
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| 164 | :debug:configure accepted |
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| 165 | :debug:configure Ignoring active_variants requirement for tk because source-type install only considers depends_fetch depends_extract depends_lib depends_build depends_run and those do not contain tk |
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| 166 | :debug:configure Executing proc-pre-org.macports.configure-configure-1 |
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| 167 | :debug:configure compilers.enforce_c list: |
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| 168 | :debug:configure compilers.enforce_fortran list: |
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| 169 | :debug:configure compilers.enforce_some_fortran list: |
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| 170 | :debug:configure Executing proc-pre-org.macports.configure-configure-2 |
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| 171 | :debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: readline icu libiconv zlib pcre pcre2 libjpeg-turbo tiff libpng curl less texinfo bzip2 gzip zip unzip gnutar xz libgcc cairo pango glib2 freetype fontconfig gettext-runtime xorg-libsm xorg-libice xorg-libX11 xorg-libXt libomp pkgconfig gcc12 clang-14 |
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| 172 | :debug:configure Checking cairo for active variants for depspec 'path:lib/pkgconfig/cairo.pc:cairo' |
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| 173 | :debug:configure cairo is installed with the following variants: +quartz+x11 |
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| 174 | :debug:configure required: x11, forbidden: |
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| 175 | :debug:configure accepted |
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| 176 | :debug:configure Checking pango for active variants for depspec 'path:lib/pkgconfig/pango.pc:pango' |
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| 177 | :debug:configure pango is installed with the following variants: +quartz+x11 |
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| 178 | :debug:configure required: x11, forbidden: |
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| 179 | :debug:configure accepted |
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| 180 | :debug:configure Ignoring active_variants requirement for tk because source-type install only considers depends_fetch depends_extract depends_lib depends_build depends_run and those do not contain tk |
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| 181 | :debug:configure Executing org.macports.configure (R) |
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| 182 | :debug:configure Environment: |
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| 183 | :debug:configure CC='/opt/local/bin/clang-mp-14' |
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| 184 | :debug:configure CC_PRINT_OPTIONS='YES' |
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| 185 | :debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/.CC_PRINT_OPTIONS' |
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| 186 | :debug:configure CFLAGS='-pipe -Os -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64' |
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| 187 | :debug:configure CPATH='/opt/local/include' |
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| 188 | :debug:configure CPPFLAGS='-I/opt/local/include -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk' |
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| 189 | :debug:configure CXX='/opt/local/bin/clang++-mp-14' |
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| 190 | :debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++ -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64' |
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| 191 | :debug:configure DEVELOPER_DIR='/Library/Developer/CommandLineTools' |
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| 192 | :debug:configure F77='/opt/local/bin/gfortran-mp-12' |
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| 193 | :debug:configure F90FLAGS='-pipe -Os -m64' |
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| 194 | :debug:configure FC='/opt/local/bin/gfortran-mp-12' |
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| 195 | :debug:configure FCFLAGS='-pipe -Os -m64' |
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| 196 | :debug:configure FFLAGS='-pipe -Os -m64' |
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| 197 | :debug:configure INSTALL='/usr/bin/install -c' |
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| 198 | :debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -Wl,-rpath /opt/local/lib/libgcc -Wl,-syslibroot,/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64' |
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| 199 | :debug:configure LIBRARY_PATH='/opt/local/lib' |
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| 200 | :debug:configure MACOSX_DEPLOYMENT_TARGET='11.0' |
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| 201 | :debug:configure OBJC='/opt/local/bin/clang-mp-14' |
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| 202 | :debug:configure OBJCFLAGS='-pipe -Os -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64' |
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| 203 | :debug:configure OBJCXX='/opt/local/bin/clang++-mp-14' |
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| 204 | :debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++ -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64' |
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| 205 | :debug:configure R_BROWSER='/usr/bin/open' |
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| 206 | :debug:configure R_PDFVIEWER='/usr/bin/open' |
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| 207 | :debug:configure SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk' |
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| 208 | :debug:configure ac_cv_path_PDFLATEX='' |
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| 209 | :debug:configure ac_cv_path_PDFTEX='' |
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| 210 | :debug:configure ac_cv_path_TEX='' |
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| 211 | :info:configure Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1" && ./configure --prefix=/opt/local/Library/Frameworks --enable-openmp --enable-R-framework --enable-memory-profiling --enable-R-shlib --enable-BLAS-shlib --without-tcltk --with-cairo --disable-java --with-included-gettext --with-blas="-framework Accelerate" --with-lapack --with-recommended-packages --with-x --x-include=/opt/local/include/X11 --x-lib=/opt/local/lib |
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| 212 | :debug:configure system: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1" && ./configure --prefix=/opt/local/Library/Frameworks --enable-openmp --enable-R-framework --enable-memory-profiling --enable-R-shlib --enable-BLAS-shlib --without-tcltk --with-cairo --disable-java --with-included-gettext --with-blas="-framework Accelerate" --with-lapack --with-recommended-packages --with-x --x-include=/opt/local/include/X11 --x-lib=/opt/local/lib |
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| 213 | :info:configure checking build system type... x86_64-apple-darwin20.6.0 |
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| 214 | :info:configure checking host system type... x86_64-apple-darwin20.6.0 |
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| 215 | :info:configure loading site script './config.site' |
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| 216 | :info:configure loading build-specific script './config.site' |
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| 217 | :info:configure checking for pwd... /bin/pwd |
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| 218 | :info:configure checking whether builddir is srcdir... yes |
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| 219 | :info:configure checking whether ln -s works... yes |
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| 220 | :info:configure checking for ar... ar |
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| 221 | :info:configure checking for a BSD-compatible install... /usr/bin/install -c |
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| 222 | :info:configure checking for sed... /usr/bin/sed |
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| 223 | :info:configure checking for which... /usr/bin/which |
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| 224 | :info:configure checking for less... /opt/local/bin/less |
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| 225 | :info:configure checking for gtar... /opt/local/bin/gtar |
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| 226 | :info:configure checking for tex... (cached) no |
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| 227 | :info:configure checking for pdftex... (cached) no |
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| 228 | :info:configure configure: WARNING: you cannot build PDF versions of the R manuals |
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| 229 | :info:configure checking for pdflatex... (cached) no |
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| 230 | :info:configure configure: WARNING: you cannot build PDF versions of vignettes and help pages |
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| 231 | :info:configure checking for makeindex... /opt/local/bin/makeindex |
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| 232 | :info:configure checking for texi2any... /opt/local/bin/texi2any |
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| 233 | :info:configure checking whether texi2any version is at least 5.1... yes |
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| 234 | :info:configure checking for ginstall-info... no |
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| 235 | :info:configure checking for install-info... /opt/local/bin/install-info |
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| 236 | :info:configure checking for texi2dvi... /opt/local/bin/texi2dvi |
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| 237 | :info:configure checking for kpsewhich... /opt/local/bin/kpsewhich |
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| 238 | :info:configure checking for latex inconsolata package... missing |
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| 239 | :info:configure configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally |
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| 240 | :info:configure checking for unzip... /opt/local/bin/unzip |
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| 241 | :info:configure checking for zip... /opt/local/bin/zip |
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| 242 | :info:configure checking for gzip... /opt/local/bin/gzip |
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| 243 | :info:configure checking for bzip2... /opt/local/bin/bzip2 |
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| 244 | :info:configure using default browser ... /usr/bin/open |
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| 245 | :info:configure checking for /usr/bin/open... /usr/bin/open |
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| 246 | :info:configure checking for working aclocal... found |
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| 247 | :info:configure checking for working autoconf... found |
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| 248 | :info:configure checking for working autoheader... found |
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| 249 | :info:configure checking for bison... bison -y |
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| 250 | :info:configure checking for notangle... false |
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| 251 | :info:configure checking for realpath... false |
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| 252 | :info:configure checking for pkg-config... /opt/local/bin/pkg-config |
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| 253 | :info:configure checking for gcc... /opt/local/bin/clang-mp-14 |
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| 254 | :info:configure checking whether the C compiler works... yes |
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| 255 | :info:configure checking for C compiler default output file name... a.out |
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| 256 | :info:configure checking for suffix of executables... |
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| 257 | :info:configure checking whether we are cross compiling... no |
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| 258 | :info:configure checking for suffix of object files... o |
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| 259 | :info:configure checking whether the compiler supports GNU C... yes |
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| 260 | :info:configure checking whether /opt/local/bin/clang-mp-14 accepts -g... yes |
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| 261 | :info:configure checking for /opt/local/bin/clang-mp-14 option to enable C11 features... none needed |
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| 262 | :info:configure checking how to run the C preprocessor... /opt/local/bin/clang-mp-14 -E |
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| 263 | :info:configure checking for grep that handles long lines and -e... /opt/local/bin/ggrep |
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| 264 | :info:configure checking for egrep... /opt/local/bin/ggrep -E |
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| 265 | :info:configure checking whether /opt/local/bin/clang-mp-14 needs -traditional... no |
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| 266 | :info:configure checking for stdio.h... yes |
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| 267 | :info:configure checking for stdlib.h... yes |
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| 268 | :info:configure checking for string.h... yes |
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| 269 | :info:configure checking for inttypes.h... yes |
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| 270 | :info:configure checking for stdint.h... yes |
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| 271 | :info:configure checking for strings.h... yes |
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| 272 | :info:configure checking for sys/stat.h... yes |
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| 273 | :info:configure checking for sys/types.h... yes |
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| 274 | :info:configure checking for unistd.h... yes |
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| 275 | :info:configure checking for wchar.h... yes |
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| 276 | :info:configure checking for minix/config.h... no |
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| 277 | :info:configure checking for sys/time.h... yes |
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| 278 | :info:configure checking for sys/param.h... yes |
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| 279 | :info:configure checking whether it is safe to define __EXTENSIONS__... yes |
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| 280 | :info:configure checking whether _XOPEN_SOURCE should be defined... no |
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| 281 | :info:configure checking how to run the C preprocessor... /opt/local/bin/clang-mp-14 -E |
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| 282 | :info:configure looking for a modern Fortran compiler |
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| 283 | :info:configure checking whether the compiler supports GNU Fortran... no |
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| 284 | :info:configure checking whether /opt/local/bin/gfortran-mp-12 accepts -g... no |
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| 285 | :info:configure checking whether the compiler supports GNU C++... yes |
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| 286 | :info:configure checking whether /opt/local/bin/clang++-mp-14 accepts -g... yes |
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| 287 | :info:configure checking for /opt/local/bin/clang++-mp-14 option to enable C++11 features... none needed |
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| 288 | :info:configure checking whether /opt/local/bin/clang++-mp-14 -pipe -Os -stdlib=libc++ -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64 can compile C++ code... yes |
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| 289 | :info:configure checking how to run the C++ preprocessor... /opt/local/bin/clang++-mp-14 -E |
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| 290 | :info:configure checking whether __attribute__((visibility())) is supported... no |
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| 291 | :info:configure checking whether /opt/local/bin/clang-mp-14 accepts -fvisibility... yes |
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| 292 | :info:configure checking whether /opt/local/bin/clang++-mp-14 accepts -fvisibility... yes |
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| 293 | :info:configure checking whether /opt/local/bin/gfortran-mp-12 accepts -fvisibility... no |
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| 294 | :info:configure checking whether the compiler supports GNU Objective C... yes |
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| 295 | :info:configure checking whether /opt/local/bin/clang-mp-14 accepts -g... yes |
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| 296 | :info:configure checking whether /opt/local/bin/clang++-mp-14 can compile ObjC++... yes |
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| 297 | :info:configure checking for Objective C++ compiler... /opt/local/bin/clang++-mp-14 |
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| 298 | :info:configure checking how to print strings... printf |
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| 299 | :info:configure checking for a sed that does not truncate output... (cached) /usr/bin/sed |
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| 300 | :info:configure checking for fgrep... /opt/local/bin/ggrep -F |
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| 301 | :info:configure checking for ld used by /opt/local/bin/clang-mp-14... /opt/local/libexec/llvm-14/bin/ld |
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| 302 | :info:configure checking if the linker (/opt/local/libexec/llvm-14/bin/ld) is GNU ld... no |
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| 303 | :info:configure checking for BSD- or MS-compatible name lister (nm)... /opt/local/bin/nm -B |
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| 304 | :info:configure checking the name lister (/opt/local/bin/nm -B) interface... BSD nm |
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| 305 | :info:configure checking the maximum length of command line arguments... 786432 |
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| 306 | :info:configure checking how to convert x86_64-apple-darwin20.6.0 file names to x86_64-apple-darwin20.6.0 format... func_convert_file_noop |
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| 307 | :info:configure checking how to convert x86_64-apple-darwin20.6.0 file names to toolchain format... func_convert_file_noop |
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| 308 | :info:configure checking for /opt/local/libexec/llvm-14/bin/ld option to reload object files... -r |
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| 309 | :info:configure checking for objdump... objdump |
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| 310 | :info:configure checking how to recognize dependent libraries... pass_all |
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| 311 | :info:configure checking for dlltool... no |
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| 312 | :info:configure checking how to associate runtime and link libraries... printf %s\n |
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| 313 | :info:configure checking for archiver @FILE support... no |
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| 314 | :info:configure checking for strip... strip |
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| 315 | :info:configure checking for ranlib... ranlib |
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| 316 | :info:configure checking for gawk... gawk |
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| 317 | :info:configure checking command to parse /opt/local/bin/nm -B output from /opt/local/bin/clang-mp-14 object... ok |
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| 318 | :info:configure checking for sysroot... no |
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| 319 | :info:configure checking for a working dd... /bin/dd |
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| 320 | :info:configure checking how to truncate binary pipes... /bin/dd bs=4096 count=1 |
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| 321 | :info:configure checking for mt... no |
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| 322 | :info:configure checking if : is a manifest tool... no |
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| 323 | :info:configure checking for dsymutil... dsymutil |
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| 324 | :info:configure checking for nmedit... nmedit |
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| 325 | :info:configure checking for lipo... lipo |
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| 326 | :info:configure checking for otool... otool |
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| 327 | :info:configure checking for otool64... no |
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| 328 | :info:configure checking for -single_module linker flag... yes |
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| 329 | :info:configure checking for -exported_symbols_list linker flag... yes |
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| 330 | :info:configure checking for -force_load linker flag... yes |
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| 331 | :info:configure checking for dlfcn.h... yes |
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| 332 | :info:configure checking for objdir... .libs |
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| 333 | :info:configure checking if /opt/local/bin/clang-mp-14 supports -fno-rtti -fno-exceptions... yes |
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| 334 | :info:configure checking for /opt/local/bin/clang-mp-14 option to produce PIC... -fno-common -DPIC |
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| 335 | :info:configure checking if /opt/local/bin/clang-mp-14 PIC flag -fno-common -DPIC works... yes |
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| 336 | :info:configure checking if /opt/local/bin/clang-mp-14 static flag -static works... no |
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| 337 | :info:configure checking if /opt/local/bin/clang-mp-14 supports -c -o file.o... yes |
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| 338 | :info:configure checking if /opt/local/bin/clang-mp-14 supports -c -o file.o... (cached) yes |
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| 339 | :info:configure checking whether the /opt/local/bin/clang-mp-14 linker (/opt/local/libexec/llvm-14/bin/ld) supports shared libraries... yes |
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| 340 | :info:configure checking dynamic linker characteristics... darwin20.6.0 dyld |
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| 341 | :info:configure checking how to hardcode library paths into programs... immediate |
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| 342 | :info:configure checking whether stripping libraries is possible... yes |
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| 343 | :info:configure checking if libtool supports shared libraries... yes |
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| 344 | :info:configure checking whether to build shared libraries... yes |
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| 345 | :info:configure checking whether to build static libraries... no |
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| 346 | :info:configure checking how to run the C++ preprocessor... /opt/local/bin/clang++-mp-14 -E |
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| 347 | :info:configure checking for ld used by /opt/local/bin/clang++-mp-14... /opt/local/libexec/llvm-14/bin/ld |
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| 348 | :info:configure checking if the linker (/opt/local/libexec/llvm-14/bin/ld) is GNU ld... no |
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| 349 | :info:configure checking whether the /opt/local/bin/clang++-mp-14 linker (/opt/local/libexec/llvm-14/bin/ld) supports shared libraries... yes |
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| 350 | :info:configure checking for /opt/local/bin/clang++-mp-14 option to produce PIC... -fno-common -DPIC |
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| 351 | :info:configure checking if /opt/local/bin/clang++-mp-14 PIC flag -fno-common -DPIC works... yes |
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| 352 | :info:configure checking if /opt/local/bin/clang++-mp-14 static flag -static works... no |
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| 353 | :info:configure checking if /opt/local/bin/clang++-mp-14 supports -c -o file.o... yes |
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| 354 | :info:configure checking if /opt/local/bin/clang++-mp-14 supports -c -o file.o... (cached) yes |
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| 355 | :info:configure checking whether the /opt/local/bin/clang++-mp-14 linker (/opt/local/libexec/llvm-14/bin/ld) supports shared libraries... yes |
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| 356 | :info:configure checking dynamic linker characteristics... darwin20.6.0 dyld |
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| 357 | :info:configure checking how to hardcode library paths into programs... immediate |
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| 358 | :info:configure checking if libtool supports shared libraries... yes |
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| 359 | :info:configure checking whether to build shared libraries... yes |
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| 360 | :info:configure checking whether to build static libraries... no |
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| 361 | :info:configure libtool.m4: error: problem compiling FC test program |
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| 362 | :info:configure checking for /opt/local/bin/gfortran-mp-12 option to produce PIC... -fno-common |
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| 363 | :info:configure checking if /opt/local/bin/gfortran-mp-12 PIC flag -fno-common works... no |
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| 364 | :info:configure checking if /opt/local/bin/gfortran-mp-12 static flag works... no |
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| 365 | :info:configure checking if /opt/local/bin/gfortran-mp-12 supports -c -o file.o... no |
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| 366 | :info:configure checking if /opt/local/bin/gfortran-mp-12 supports -c -o file.o... (cached) no |
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| 367 | :info:configure checking whether the /opt/local/bin/gfortran-mp-12 linker (/opt/local/libexec/llvm-14/bin/ld) supports shared libraries... no |
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| 368 | :info:configure checking dynamic linker characteristics... darwin20.6.0 dyld |
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| 369 | :info:configure checking how to hardcode library paths into programs... immediate |
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| 370 | :info:configure checking for sin in -lm... yes |
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| 371 | :info:configure checking for dlopen in -ldl... yes |
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| 372 | :info:configure checking for readline/history.h... yes |
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| 373 | :info:configure checking for readline/readline.h... yes |
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| 374 | :info:configure checking for rl_callback_read_char in -lreadline... yes |
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| 375 | :info:configure checking for history_truncate_file... yes |
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| 376 | :info:configure checking for tilde_expand_word... yes |
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| 377 | :info:configure checking whether rl_completion_matches exists and is declared... yes |
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| 378 | :info:configure checking whether rl_resize_terminal exists and is declared... yes |
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| 379 | :info:configure checking whether rl_sort_completion_matches exists and is declared... yes |
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| 380 | :info:configure checking for dirent.h that defines DIR... yes |
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| 381 | :info:configure checking for library containing opendir... none required |
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| 382 | :info:configure checking for sys/wait.h that is POSIX.1 compatible... yes |
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| 383 | :info:configure checking for dlfcn.h... (cached) yes |
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| 384 | :info:configure checking for fcntl.h... yes |
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| 385 | :info:configure checking for glob.h... yes |
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| 386 | :info:configure checking for grp.h... yes |
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| 387 | :info:configure checking for pwd.h... yes |
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| 388 | :info:configure checking for sched.h... yes |
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| 389 | :info:configure checking for strings.h... (cached) yes |
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| 390 | :info:configure checking for sys/resource.h... yes |
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| 391 | :info:configure checking for sys/select.h... yes |
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| 392 | :info:configure checking for sys/socket.h... yes |
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| 393 | :info:configure checking for sys/stat.h... (cached) yes |
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| 394 | :info:configure checking for sys/time.h... (cached) yes |
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| 395 | :info:configure checking for sys/times.h... yes |
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| 396 | :info:configure checking for sys/utsname.h... yes |
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| 397 | :info:configure checking for unistd.h... (cached) yes |
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| 398 | :info:configure checking for utime.h... yes |
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| 399 | :info:configure checking for arpa/inet.h... yes |
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| 400 | :info:configure checking for elf.h... no |
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| 401 | :info:configure checking for features.h... no |
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| 402 | :info:configure checking for floatingpoint.h... no |
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| 403 | :info:configure checking for langinfo.h... yes |
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| 404 | :info:configure checking for netdb.h... yes |
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| 405 | :info:configure checking for netinet/in.h... yes |
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| 406 | :info:configure checking for sys/param.h... (cached) yes |
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| 407 | :info:configure checking for stdalign.h... yes |
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| 408 | :info:configure checking for errno.h... yes |
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| 409 | :info:configure checking for inttypes.h... (cached) yes |
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| 410 | :info:configure checking for limits.h... yes |
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| 411 | :info:configure checking for locale.h... yes |
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| 412 | :info:configure checking for stdarg.h... yes |
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| 413 | :info:configure checking for stdbool.h... yes |
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| 414 | :info:configure checking for stdint.h... (cached) yes |
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| 415 | :info:configure checking for string.h... (cached) yes |
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| 416 | :info:configure checking for /opt/local/bin/clang-mp-14 options needed to detect all undeclared functions... -fno-builtin |
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| 417 | :info:configure checking whether setjmp.h is POSIX.1 compatible... yes |
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| 418 | :info:configure checking whether sigsetjmp is declared... yes |
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| 419 | :info:configure checking whether siglongjmp is declared... yes |
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| 420 | :info:configure checking for GNU C library with version >= 2... no |
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| 421 | :info:configure checking for uint64_t... yes |
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| 422 | :info:configure checking for int64_t... yes |
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| 423 | :info:configure checking for int_fast64_t... yes |
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| 424 | :info:configure checking for pid_t... yes |
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| 425 | :info:configure checking for size_t... yes |
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| 426 | :info:configure checking whether SIZE_MAX is declared... yes |
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| 427 | :info:configure checking for blkcnt_t... yes |
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| 428 | :info:configure checking for type of socket length... socklen_t * |
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| 429 | :info:configure checking for stack_t... yes |
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| 430 | :info:configure checking for intptr_t... yes |
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| 431 | :info:configure checking for uintptr_t... yes |
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| 432 | :info:configure checking whether byte ordering is bigendian... no |
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| 433 | :info:configure checking for an ANSI C-conforming const... yes |
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| 434 | :info:configure checking for inline... inline |
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| 435 | :info:configure checking size of int... 4 |
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| 436 | :info:configure checking size of long... 8 |
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| 437 | :info:configure checking size of long long... 8 |
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| 438 | :info:configure checking size of double... 8 |
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| 439 | :info:configure checking size of size_t... 8 |
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| 440 | :info:configure checking for C stack direction... down |
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| 441 | :info:configure checking size of long double... 16 |
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| 442 | :info:configure checking whether we can compute C Make dependencies... yes, using $(CC) -MM |
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| 443 | :info:configure checking whether /opt/local/bin/clang-mp-14 supports -c -o FILE.lo... yes |
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| 444 | :info:configure checking for /opt/local/bin/clang-mp-14 option to support OpenMP... -fopenmp |
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| 445 | :info:configure checking how to get verbose linking output from /opt/local/bin/gfortran-mp-12... configure: WARNING: compilation failed |
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| 446 | :info:configure checking for Fortran libraries of /opt/local/bin/gfortran-mp-12... |
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| 447 | :info:configure checking how to get verbose linking output from /opt/local/bin/clang-mp-14... configure: WARNING: cannot determine how to obtain linking information from /opt/local/bin/clang-mp-14 |
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| 448 | :info:configure checking for C libraries of /opt/local/bin/clang-mp-14... |
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| 449 | :info:configure checking for dummy main to link with Fortran libraries... none |
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| 450 | :info:configure checking for Fortran name-mangling scheme... configure: error: in `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1': |
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| 451 | :info:configure configure: error: cannot compile a simple Fortran program |
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| 452 | :info:configure See `config.log' for more details |
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| 453 | :info:configure Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1" && ./configure --prefix=/opt/local/Library/Frameworks --enable-openmp --enable-R-framework --enable-memory-profiling --enable-R-shlib --enable-BLAS-shlib --without-tcltk --with-cairo --disable-java --with-included-gettext --with-blas="-framework Accelerate" --with-lapack --with-recommended-packages --with-x --x-include=/opt/local/include/X11 --x-lib=/opt/local/lib |
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| 454 | :info:configure Exit code: 1 |
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| 455 | :error:configure Failed to configure R: consult /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1/config.log |
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| 456 | :error:configure Failed to configure R: configure failure: command execution failed |
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| 457 | :debug:configure Error code: NONE |
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| 458 | :debug:configure Backtrace: configure failure: command execution failed |
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| 459 | :debug:configure while executing |
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| 460 | :debug:configure "$procedure $targetname" |
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| 461 | :error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/main.log for details. |
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| 462 | version:1 |
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| 463 | :debug:main Starting logging for R @4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11 |
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| 464 | :debug:sysinfo macOS 11.6.7 (darwin/20.6.0) arch i386 |
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| 465 | :debug:sysinfo MacPorts 2.7.2 |
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| 466 | :debug:sysinfo Xcode 13.2.1 |
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| 467 | :debug:sysinfo SDK 11 |
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| 468 | :debug:sysinfo MACOSX_DEPLOYMENT_TARGET: 11.0 |
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| 469 | :msg:main ---> Computing dependencies for R:info:main .:debug:main R has no conflicts |
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| 470 | :debug:main Searching for dependency: pkgconfig |
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| 471 | :debug:main Found Dependency: receipt exists for pkgconfig |
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| 472 | :debug:main Searching for dependency: gcc12 |
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| 473 | :debug:main Found Dependency: receipt exists for gcc12 |
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| 474 | :debug:main Searching for dependency: clang-14 |
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| 475 | :debug:main Found Dependency: receipt exists for clang-14 |
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| 476 | :debug:main Searching for dependency: readline |
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| 477 | :debug:main Found Dependency: receipt exists for readline |
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| 478 | :debug:main Searching for dependency: icu |
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| 479 | :debug:main Found Dependency: receipt exists for icu |
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| 480 | :debug:main Searching for dependency: libiconv |
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| 481 | :debug:main Found Dependency: receipt exists for libiconv |
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| 482 | :debug:main Searching for dependency: zlib |
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| 483 | :debug:main Found Dependency: receipt exists for zlib |
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| 484 | :debug:main Searching for dependency: pcre |
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| 485 | :debug:main Found Dependency: receipt exists for pcre |
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| 486 | :debug:main Searching for dependency: pcre2 |
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| 487 | :debug:main Found Dependency: receipt exists for pcre2 |
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| 488 | :debug:main Searching for dependency: libjpeg-turbo |
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| 489 | :debug:main Found Dependency: receipt exists for libjpeg-turbo |
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| 490 | :debug:main Searching for dependency: tiff |
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| 491 | :debug:main Found Dependency: receipt exists for tiff |
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| 492 | :debug:main Searching for dependency: libpng |
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| 493 | :debug:main Found Dependency: receipt exists for libpng |
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| 494 | :debug:main Searching for dependency: curl |
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| 495 | :debug:main Found Dependency: receipt exists for curl |
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| 496 | :debug:main Searching for dependency: less |
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| 497 | :debug:main Found Dependency: receipt exists for less |
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| 498 | :debug:main Searching for dependency: texinfo |
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| 499 | :debug:main Found Dependency: receipt exists for texinfo |
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| 500 | :debug:main Searching for dependency: bzip2 |
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| 501 | :debug:main Found Dependency: receipt exists for bzip2 |
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| 502 | :debug:main Searching for dependency: gzip |
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| 503 | :debug:main Found Dependency: receipt exists for gzip |
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| 504 | :debug:main Searching for dependency: zip |
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| 505 | :debug:main Found Dependency: receipt exists for zip |
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| 506 | :debug:main Searching for dependency: unzip |
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| 507 | :debug:main Found Dependency: receipt exists for unzip |
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| 508 | :debug:main Searching for dependency: gnutar |
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| 509 | :debug:main Found Dependency: receipt exists for gnutar |
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| 510 | :debug:main Searching for dependency: xz |
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| 511 | :debug:main Found Dependency: receipt exists for xz |
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| 512 | :debug:main Searching for dependency: libgcc |
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| 513 | :debug:main Found Dependency: receipt exists for libgcc |
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| 514 | :debug:main Searching for dependency: cairo |
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| 515 | :debug:main Found Dependency: receipt exists for cairo |
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| 516 | :debug:main Searching for dependency: pango |
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| 517 | :debug:main Found Dependency: receipt exists for pango |
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| 518 | :debug:main Searching for dependency: glib2 |
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| 519 | :debug:main Found Dependency: receipt exists for glib2 |
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| 520 | :debug:main Searching for dependency: freetype |
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| 521 | :debug:main Found Dependency: receipt exists for freetype |
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| 522 | :debug:main Searching for dependency: fontconfig |
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| 523 | :debug:main Found Dependency: receipt exists for fontconfig |
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| 524 | :debug:main Searching for dependency: gettext-runtime |
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| 525 | :debug:main Found Dependency: receipt exists for gettext-runtime |
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| 526 | :debug:main Searching for dependency: xorg-libsm |
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| 527 | :debug:main Found Dependency: receipt exists for xorg-libsm |
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| 528 | :debug:main Searching for dependency: xorg-libice |
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| 529 | :debug:main Found Dependency: receipt exists for xorg-libice |
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| 530 | :debug:main Searching for dependency: xorg-libX11 |
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| 531 | :debug:main Found Dependency: receipt exists for xorg-libX11 |
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| 532 | :debug:main Searching for dependency: xorg-libXt |
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| 533 | :debug:main Found Dependency: receipt exists for xorg-libXt |
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| 534 | :debug:main Searching for dependency: libomp |
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| 535 | :debug:main Found Dependency: receipt exists for libomp |
|---|
| 536 | :debug:main Executing org.macports.main (R) |
|---|
| 537 | :debug:main dropping privileges: euid changed to 506, egid changed to 505. |
|---|
| 538 | :debug:archivefetch archivefetch phase started at Fri Jul 22 15:57:22 EDT 2022 |
|---|
| 539 | :msg:archivefetch ---> Fetching archive for R |
|---|
| 540 | :debug:archivefetch Executing proc-pre-org.macports.archivefetch-archivefetch-0 |
|---|
| 541 | :debug:archivefetch Executing org.macports.archivefetch (R) |
|---|
| 542 | :debug:archivefetch euid/egid changed to: 0/0 |
|---|
| 543 | :debug:archivefetch chowned /opt/local/var/macports/incoming to macports |
|---|
| 544 | :debug:archivefetch euid/egid changed to: 506/505 |
|---|
| 545 | :info:archivefetch ---> R-4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11.darwin_20.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified |
|---|
| 546 | :msg:archivefetch ---> Attempting to fetch R-4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11.darwin_20.x86_64.tbz2 from https://packages.macports.org/R |
|---|
| 547 | :debug:archivefetch Fetching archive failed: The requested URL returned error: 404 |
|---|
| 548 | :msg:archivefetch ---> Attempting to fetch R-4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11.darwin_20.x86_64.tbz2 from https://ywg.ca.packages.macports.org/mirror/macports/packages/R |
|---|
| 549 | :debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found |
|---|
| 550 | :msg:archivefetch ---> Attempting to fetch R-4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11.darwin_20.x86_64.tbz2 from https://mse.uk.packages.macports.org/R |
|---|
| 551 | :debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found |
|---|
| 552 | :debug:archivefetch Privilege de-escalation not attempted as not running as root. |
|---|
| 553 | :debug:archivefetch Skipping completed org.macports.fetch (R) |
|---|
| 554 | :debug:archivefetch Privilege de-escalation not attempted as not running as root. |
|---|
| 555 | :debug:archivefetch Skipping completed org.macports.checksum (R) |
|---|
| 556 | :debug:archivefetch Privilege de-escalation not attempted as not running as root. |
|---|
| 557 | :debug:archivefetch Skipping completed org.macports.extract (R) |
|---|
| 558 | :debug:archivefetch Privilege de-escalation not attempted as not running as root. |
|---|
| 559 | :debug:archivefetch Skipping completed org.macports.patch (R) |
|---|
| 560 | :debug:archivefetch Privilege de-escalation not attempted as not running as root. |
|---|
| 561 | :debug:configure configure phase started at Fri Jul 22 15:57:27 EDT 2022 |
|---|
| 562 | :notice:configure ---> Configuring R |
|---|
| 563 | :debug:configure Preferred compilers: macports-clang-14 macports-clang-13 macports-clang-12 macports-clang-11 macports-clang-10 macports-clang-9.0 |
|---|
| 564 | :debug:configure Using compiler 'MacPorts Clang 14' |
|---|
| 565 | :debug:configure Executing proc-pre-org.macports.configure-configure-0 |
|---|
| 566 | :debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: readline icu libiconv zlib pcre pcre2 libjpeg-turbo tiff libpng curl less texinfo bzip2 gzip zip unzip gnutar xz libgcc cairo pango glib2 freetype fontconfig gettext-runtime xorg-libsm xorg-libice xorg-libX11 xorg-libXt libomp pkgconfig gcc12 clang-14 |
|---|
| 567 | :debug:configure Checking cairo for active variants for depspec 'path:lib/pkgconfig/cairo.pc:cairo' |
|---|
| 568 | :debug:configure cairo is installed with the following variants: +quartz+x11 |
|---|
| 569 | :debug:configure required: x11, forbidden: |
|---|
| 570 | :debug:configure accepted |
|---|
| 571 | :debug:configure Checking pango for active variants for depspec 'path:lib/pkgconfig/pango.pc:pango' |
|---|
| 572 | :debug:configure pango is installed with the following variants: +quartz+x11 |
|---|
| 573 | :debug:configure required: x11, forbidden: |
|---|
| 574 | :debug:configure accepted |
|---|
| 575 | :debug:configure Ignoring active_variants requirement for tk because source-type install only considers depends_fetch depends_extract depends_lib depends_build depends_run and those do not contain tk |
|---|
| 576 | :debug:configure Executing proc-pre-org.macports.configure-configure-1 |
|---|
| 577 | :debug:configure compilers.enforce_c list: |
|---|
| 578 | :debug:configure compilers.enforce_fortran list: |
|---|
| 579 | :debug:configure compilers.enforce_some_fortran list: |
|---|
| 580 | :debug:configure Executing proc-pre-org.macports.configure-configure-2 |
|---|
| 581 | :debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: readline icu libiconv zlib pcre pcre2 libjpeg-turbo tiff libpng curl less texinfo bzip2 gzip zip unzip gnutar xz libgcc cairo pango glib2 freetype fontconfig gettext-runtime xorg-libsm xorg-libice xorg-libX11 xorg-libXt libomp pkgconfig gcc12 clang-14 |
|---|
| 582 | :debug:configure Checking cairo for active variants for depspec 'path:lib/pkgconfig/cairo.pc:cairo' |
|---|
| 583 | :debug:configure cairo is installed with the following variants: +quartz+x11 |
|---|
| 584 | :debug:configure required: x11, forbidden: |
|---|
| 585 | :debug:configure accepted |
|---|
| 586 | :debug:configure Checking pango for active variants for depspec 'path:lib/pkgconfig/pango.pc:pango' |
|---|
| 587 | :debug:configure pango is installed with the following variants: +quartz+x11 |
|---|
| 588 | :debug:configure required: x11, forbidden: |
|---|
| 589 | :debug:configure accepted |
|---|
| 590 | :debug:configure Ignoring active_variants requirement for tk because source-type install only considers depends_fetch depends_extract depends_lib depends_build depends_run and those do not contain tk |
|---|
| 591 | :debug:configure Executing org.macports.configure (R) |
|---|
| 592 | :debug:configure Environment: |
|---|
| 593 | :debug:configure CC='/opt/local/bin/clang-mp-14' |
|---|
| 594 | :debug:configure CC_PRINT_OPTIONS='YES' |
|---|
| 595 | :debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/.CC_PRINT_OPTIONS' |
|---|
| 596 | :debug:configure CFLAGS='-pipe -Os -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64' |
|---|
| 597 | :debug:configure CPATH='/opt/local/include' |
|---|
| 598 | :debug:configure CPPFLAGS='-I/opt/local/include -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk' |
|---|
| 599 | :debug:configure CXX='/opt/local/bin/clang++-mp-14' |
|---|
| 600 | :debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++ -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64' |
|---|
| 601 | :debug:configure DEVELOPER_DIR='/Library/Developer/CommandLineTools' |
|---|
| 602 | :debug:configure F77='/opt/local/bin/gfortran-mp-12' |
|---|
| 603 | :debug:configure F90FLAGS='-pipe -Os -m64' |
|---|
| 604 | :debug:configure FC='/opt/local/bin/gfortran-mp-12' |
|---|
| 605 | :debug:configure FCFLAGS='-pipe -Os -m64' |
|---|
| 606 | :debug:configure FFLAGS='-pipe -Os -m64' |
|---|
| 607 | :debug:configure INSTALL='/usr/bin/install -c' |
|---|
| 608 | :debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -Wl,-rpath /opt/local/lib/libgcc -Wl,-syslibroot,/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64' |
|---|
| 609 | :debug:configure LIBRARY_PATH='/opt/local/lib' |
|---|
| 610 | :debug:configure MACOSX_DEPLOYMENT_TARGET='11.0' |
|---|
| 611 | :debug:configure OBJC='/opt/local/bin/clang-mp-14' |
|---|
| 612 | :debug:configure OBJCFLAGS='-pipe -Os -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64' |
|---|
| 613 | :debug:configure OBJCXX='/opt/local/bin/clang++-mp-14' |
|---|
| 614 | :debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++ -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64' |
|---|
| 615 | :debug:configure R_BROWSER='/usr/bin/open' |
|---|
| 616 | :debug:configure R_PDFVIEWER='/usr/bin/open' |
|---|
| 617 | :debug:configure SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk' |
|---|
| 618 | :debug:configure ac_cv_path_PDFLATEX='' |
|---|
| 619 | :debug:configure ac_cv_path_PDFTEX='' |
|---|
| 620 | :debug:configure ac_cv_path_TEX='' |
|---|
| 621 | :info:configure Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1" && ./configure --prefix=/opt/local/Library/Frameworks --enable-openmp --enable-R-framework --enable-memory-profiling --enable-R-shlib --enable-BLAS-shlib --without-tcltk --with-cairo --disable-java --with-included-gettext --with-blas="-framework Accelerate" --with-lapack --with-recommended-packages --with-x --x-include=/opt/local/include/X11 --x-lib=/opt/local/lib |
|---|
| 622 | :debug:configure system: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1" && ./configure --prefix=/opt/local/Library/Frameworks --enable-openmp --enable-R-framework --enable-memory-profiling --enable-R-shlib --enable-BLAS-shlib --without-tcltk --with-cairo --disable-java --with-included-gettext --with-blas="-framework Accelerate" --with-lapack --with-recommended-packages --with-x --x-include=/opt/local/include/X11 --x-lib=/opt/local/lib |
|---|
| 623 | :info:configure checking build system type... x86_64-apple-darwin20.6.0 |
|---|
| 624 | :info:configure checking host system type... x86_64-apple-darwin20.6.0 |
|---|
| 625 | :info:configure loading site script './config.site' |
|---|
| 626 | :info:configure loading build-specific script './config.site' |
|---|
| 627 | :info:configure checking for pwd... /bin/pwd |
|---|
| 628 | :info:configure checking whether builddir is srcdir... yes |
|---|
| 629 | :info:configure checking whether ln -s works... yes |
|---|
| 630 | :info:configure checking for ar... ar |
|---|
| 631 | :info:configure checking for a BSD-compatible install... /usr/bin/install -c |
|---|
| 632 | :info:configure checking for sed... /usr/bin/sed |
|---|
| 633 | :info:configure checking for which... /usr/bin/which |
|---|
| 634 | :info:configure checking for less... /opt/local/bin/less |
|---|
| 635 | :info:configure checking for gtar... /opt/local/bin/gtar |
|---|
| 636 | :info:configure checking for tex... (cached) no |
|---|
| 637 | :info:configure checking for pdftex... (cached) no |
|---|
| 638 | :info:configure configure: WARNING: you cannot build PDF versions of the R manuals |
|---|
| 639 | :info:configure checking for pdflatex... (cached) no |
|---|
| 640 | :info:configure configure: WARNING: you cannot build PDF versions of vignettes and help pages |
|---|
| 641 | :info:configure checking for makeindex... /opt/local/bin/makeindex |
|---|
| 642 | :info:configure checking for texi2any... /opt/local/bin/texi2any |
|---|
| 643 | :info:configure checking whether texi2any version is at least 5.1... yes |
|---|
| 644 | :info:configure checking for ginstall-info... no |
|---|
| 645 | :info:configure checking for install-info... /opt/local/bin/install-info |
|---|
| 646 | :info:configure checking for texi2dvi... /opt/local/bin/texi2dvi |
|---|
| 647 | :info:configure checking for kpsewhich... /opt/local/bin/kpsewhich |
|---|
| 648 | :info:configure checking for latex inconsolata package... missing |
|---|
| 649 | :info:configure configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally |
|---|
| 650 | :info:configure checking for unzip... /opt/local/bin/unzip |
|---|
| 651 | :info:configure checking for zip... /opt/local/bin/zip |
|---|
| 652 | :info:configure checking for gzip... /opt/local/bin/gzip |
|---|
| 653 | :info:configure checking for bzip2... /opt/local/bin/bzip2 |
|---|
| 654 | :info:configure using default browser ... /usr/bin/open |
|---|
| 655 | :info:configure checking for /usr/bin/open... /usr/bin/open |
|---|
| 656 | :info:configure checking for working aclocal... found |
|---|
| 657 | :info:configure checking for working autoconf... found |
|---|
| 658 | :info:configure checking for working autoheader... found |
|---|
| 659 | :info:configure checking for bison... bison -y |
|---|
| 660 | :info:configure checking for notangle... false |
|---|
| 661 | :info:configure checking for realpath... false |
|---|
| 662 | :info:configure checking for pkg-config... /opt/local/bin/pkg-config |
|---|
| 663 | :info:configure checking for gcc... /opt/local/bin/clang-mp-14 |
|---|
| 664 | :info:configure checking whether the C compiler works... yes |
|---|
| 665 | :info:configure checking for C compiler default output file name... a.out |
|---|
| 666 | :info:configure checking for suffix of executables... |
|---|
| 667 | :info:configure checking whether we are cross compiling... no |
|---|
| 668 | :info:configure checking for suffix of object files... o |
|---|
| 669 | :info:configure checking whether the compiler supports GNU C... yes |
|---|
| 670 | :info:configure checking whether /opt/local/bin/clang-mp-14 accepts -g... yes |
|---|
| 671 | :info:configure checking for /opt/local/bin/clang-mp-14 option to enable C11 features... none needed |
|---|
| 672 | :info:configure checking how to run the C preprocessor... /opt/local/bin/clang-mp-14 -E |
|---|
| 673 | :info:configure checking for grep that handles long lines and -e... /opt/local/bin/ggrep |
|---|
| 674 | :info:configure checking for egrep... /opt/local/bin/ggrep -E |
|---|
| 675 | :info:configure checking whether /opt/local/bin/clang-mp-14 needs -traditional... no |
|---|
| 676 | :info:configure checking for stdio.h... yes |
|---|
| 677 | :info:configure checking for stdlib.h... yes |
|---|
| 678 | :info:configure checking for string.h... yes |
|---|
| 679 | :info:configure checking for inttypes.h... yes |
|---|
| 680 | :info:configure checking for stdint.h... yes |
|---|
| 681 | :info:configure checking for strings.h... yes |
|---|
| 682 | :info:configure checking for sys/stat.h... yes |
|---|
| 683 | :info:configure checking for sys/types.h... yes |
|---|
| 684 | :info:configure checking for unistd.h... yes |
|---|
| 685 | :info:configure checking for wchar.h... yes |
|---|
| 686 | :info:configure checking for minix/config.h... no |
|---|
| 687 | :info:configure checking for sys/time.h... yes |
|---|
| 688 | :info:configure checking for sys/param.h... yes |
|---|
| 689 | :info:configure checking whether it is safe to define __EXTENSIONS__... yes |
|---|
| 690 | :info:configure checking whether _XOPEN_SOURCE should be defined... no |
|---|
| 691 | :info:configure checking how to run the C preprocessor... /opt/local/bin/clang-mp-14 -E |
|---|
| 692 | :info:configure looking for a modern Fortran compiler |
|---|
| 693 | :info:configure checking whether the compiler supports GNU Fortran... no |
|---|
| 694 | :info:configure checking whether /opt/local/bin/gfortran-mp-12 accepts -g... no |
|---|
| 695 | :info:configure checking whether the compiler supports GNU C++... yes |
|---|
| 696 | :info:configure checking whether /opt/local/bin/clang++-mp-14 accepts -g... yes |
|---|
| 697 | :info:configure checking for /opt/local/bin/clang++-mp-14 option to enable C++11 features... none needed |
|---|
| 698 | :info:configure checking whether /opt/local/bin/clang++-mp-14 -pipe -Os -stdlib=libc++ -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64 can compile C++ code... yes |
|---|
| 699 | :info:configure checking how to run the C++ preprocessor... /opt/local/bin/clang++-mp-14 -E |
|---|
| 700 | :info:configure checking whether __attribute__((visibility())) is supported... no |
|---|
| 701 | :info:configure checking whether /opt/local/bin/clang-mp-14 accepts -fvisibility... yes |
|---|
| 702 | :info:configure checking whether /opt/local/bin/clang++-mp-14 accepts -fvisibility... yes |
|---|
| 703 | :info:configure checking whether /opt/local/bin/gfortran-mp-12 accepts -fvisibility... no |
|---|
| 704 | :info:configure checking whether the compiler supports GNU Objective C... yes |
|---|
| 705 | :info:configure checking whether /opt/local/bin/clang-mp-14 accepts -g... yes |
|---|
| 706 | :info:configure checking whether /opt/local/bin/clang++-mp-14 can compile ObjC++... yes |
|---|
| 707 | :info:configure checking for Objective C++ compiler... /opt/local/bin/clang++-mp-14 |
|---|
| 708 | :info:configure checking how to print strings... printf |
|---|
| 709 | :info:configure checking for a sed that does not truncate output... (cached) /usr/bin/sed |
|---|
| 710 | :info:configure checking for fgrep... /opt/local/bin/ggrep -F |
|---|
| 711 | :info:configure checking for ld used by /opt/local/bin/clang-mp-14... /opt/local/libexec/llvm-14/bin/ld |
|---|
| 712 | :info:configure checking if the linker (/opt/local/libexec/llvm-14/bin/ld) is GNU ld... no |
|---|
| 713 | :info:configure checking for BSD- or MS-compatible name lister (nm)... /opt/local/bin/nm -B |
|---|
| 714 | :info:configure checking the name lister (/opt/local/bin/nm -B) interface... BSD nm |
|---|
| 715 | :info:configure checking the maximum length of command line arguments... 786432 |
|---|
| 716 | :info:configure checking how to convert x86_64-apple-darwin20.6.0 file names to x86_64-apple-darwin20.6.0 format... func_convert_file_noop |
|---|
| 717 | :info:configure checking how to convert x86_64-apple-darwin20.6.0 file names to toolchain format... func_convert_file_noop |
|---|
| 718 | :info:configure checking for /opt/local/libexec/llvm-14/bin/ld option to reload object files... -r |
|---|
| 719 | :info:configure checking for objdump... objdump |
|---|
| 720 | :info:configure checking how to recognize dependent libraries... pass_all |
|---|
| 721 | :info:configure checking for dlltool... no |
|---|
| 722 | :info:configure checking how to associate runtime and link libraries... printf %s\n |
|---|
| 723 | :info:configure checking for archiver @FILE support... no |
|---|
| 724 | :info:configure checking for strip... strip |
|---|
| 725 | :info:configure checking for ranlib... ranlib |
|---|
| 726 | :info:configure checking for gawk... gawk |
|---|
| 727 | :info:configure checking command to parse /opt/local/bin/nm -B output from /opt/local/bin/clang-mp-14 object... ok |
|---|
| 728 | :info:configure checking for sysroot... no |
|---|
| 729 | :info:configure checking for a working dd... /bin/dd |
|---|
| 730 | :info:configure checking how to truncate binary pipes... /bin/dd bs=4096 count=1 |
|---|
| 731 | :info:configure checking for mt... no |
|---|
| 732 | :info:configure checking if : is a manifest tool... no |
|---|
| 733 | :info:configure checking for dsymutil... dsymutil |
|---|
| 734 | :info:configure checking for nmedit... nmedit |
|---|
| 735 | :info:configure checking for lipo... lipo |
|---|
| 736 | :info:configure checking for otool... otool |
|---|
| 737 | :info:configure checking for otool64... no |
|---|
| 738 | :info:configure checking for -single_module linker flag... yes |
|---|
| 739 | :info:configure checking for -exported_symbols_list linker flag... yes |
|---|
| 740 | :info:configure checking for -force_load linker flag... yes |
|---|
| 741 | :info:configure checking for dlfcn.h... yes |
|---|
| 742 | :info:configure checking for objdir... .libs |
|---|
| 743 | :info:configure checking if /opt/local/bin/clang-mp-14 supports -fno-rtti -fno-exceptions... yes |
|---|
| 744 | :info:configure checking for /opt/local/bin/clang-mp-14 option to produce PIC... -fno-common -DPIC |
|---|
| 745 | :info:configure checking if /opt/local/bin/clang-mp-14 PIC flag -fno-common -DPIC works... yes |
|---|
| 746 | :info:configure checking if /opt/local/bin/clang-mp-14 static flag -static works... no |
|---|
| 747 | :info:configure checking if /opt/local/bin/clang-mp-14 supports -c -o file.o... yes |
|---|
| 748 | :info:configure checking if /opt/local/bin/clang-mp-14 supports -c -o file.o... (cached) yes |
|---|
| 749 | :info:configure checking whether the /opt/local/bin/clang-mp-14 linker (/opt/local/libexec/llvm-14/bin/ld) supports shared libraries... yes |
|---|
| 750 | :info:configure checking dynamic linker characteristics... darwin20.6.0 dyld |
|---|
| 751 | :info:configure checking how to hardcode library paths into programs... immediate |
|---|
| 752 | :info:configure checking whether stripping libraries is possible... yes |
|---|
| 753 | :info:configure checking if libtool supports shared libraries... yes |
|---|
| 754 | :info:configure checking whether to build shared libraries... yes |
|---|
| 755 | :info:configure checking whether to build static libraries... no |
|---|
| 756 | :info:configure checking how to run the C++ preprocessor... /opt/local/bin/clang++-mp-14 -E |
|---|
| 757 | :info:configure checking for ld used by /opt/local/bin/clang++-mp-14... /opt/local/libexec/llvm-14/bin/ld |
|---|
| 758 | :info:configure checking if the linker (/opt/local/libexec/llvm-14/bin/ld) is GNU ld... no |
|---|
| 759 | :info:configure checking whether the /opt/local/bin/clang++-mp-14 linker (/opt/local/libexec/llvm-14/bin/ld) supports shared libraries... yes |
|---|
| 760 | :info:configure checking for /opt/local/bin/clang++-mp-14 option to produce PIC... -fno-common -DPIC |
|---|
| 761 | :info:configure checking if /opt/local/bin/clang++-mp-14 PIC flag -fno-common -DPIC works... yes |
|---|
| 762 | :info:configure checking if /opt/local/bin/clang++-mp-14 static flag -static works... no |
|---|
| 763 | :info:configure checking if /opt/local/bin/clang++-mp-14 supports -c -o file.o... yes |
|---|
| 764 | :info:configure checking if /opt/local/bin/clang++-mp-14 supports -c -o file.o... (cached) yes |
|---|
| 765 | :info:configure checking whether the /opt/local/bin/clang++-mp-14 linker (/opt/local/libexec/llvm-14/bin/ld) supports shared libraries... yes |
|---|
| 766 | :info:configure checking dynamic linker characteristics... darwin20.6.0 dyld |
|---|
| 767 | :info:configure checking how to hardcode library paths into programs... immediate |
|---|
| 768 | :info:configure checking if libtool supports shared libraries... yes |
|---|
| 769 | :info:configure checking whether to build shared libraries... yes |
|---|
| 770 | :info:configure checking whether to build static libraries... no |
|---|
| 771 | :info:configure libtool.m4: error: problem compiling FC test program |
|---|
| 772 | :info:configure checking for /opt/local/bin/gfortran-mp-12 option to produce PIC... -fno-common |
|---|
| 773 | :info:configure checking if /opt/local/bin/gfortran-mp-12 PIC flag -fno-common works... no |
|---|
| 774 | :info:configure checking if /opt/local/bin/gfortran-mp-12 static flag works... no |
|---|
| 775 | :info:configure checking if /opt/local/bin/gfortran-mp-12 supports -c -o file.o... no |
|---|
| 776 | :info:configure checking if /opt/local/bin/gfortran-mp-12 supports -c -o file.o... (cached) no |
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| 777 | :info:configure checking whether the /opt/local/bin/gfortran-mp-12 linker (/opt/local/libexec/llvm-14/bin/ld) supports shared libraries... no |
|---|
| 778 | :info:configure checking dynamic linker characteristics... darwin20.6.0 dyld |
|---|
| 779 | :info:configure checking how to hardcode library paths into programs... immediate |
|---|
| 780 | :info:configure checking for sin in -lm... yes |
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| 781 | :info:configure checking for dlopen in -ldl... yes |
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| 782 | :info:configure checking for readline/history.h... yes |
|---|
| 783 | :info:configure checking for readline/readline.h... yes |
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| 784 | :info:configure checking for rl_callback_read_char in -lreadline... yes |
|---|
| 785 | :info:configure checking for history_truncate_file... yes |
|---|
| 786 | :info:configure checking for tilde_expand_word... yes |
|---|
| 787 | :info:configure checking whether rl_completion_matches exists and is declared... yes |
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| 788 | :info:configure checking whether rl_resize_terminal exists and is declared... yes |
|---|
| 789 | :info:configure checking whether rl_sort_completion_matches exists and is declared... yes |
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| 790 | :info:configure checking for dirent.h that defines DIR... yes |
|---|
| 791 | :info:configure checking for library containing opendir... none required |
|---|
| 792 | :info:configure checking for sys/wait.h that is POSIX.1 compatible... yes |
|---|
| 793 | :info:configure checking for dlfcn.h... (cached) yes |
|---|
| 794 | :info:configure checking for fcntl.h... yes |
|---|
| 795 | :info:configure checking for glob.h... yes |
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| 796 | :info:configure checking for grp.h... yes |
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| 797 | :info:configure checking for pwd.h... yes |
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| 798 | :info:configure checking for sched.h... yes |
|---|
| 799 | :info:configure checking for strings.h... (cached) yes |
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| 800 | :info:configure checking for sys/resource.h... yes |
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| 801 | :info:configure checking for sys/select.h... yes |
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| 802 | :info:configure checking for sys/socket.h... yes |
|---|
| 803 | :info:configure checking for sys/stat.h... (cached) yes |
|---|
| 804 | :info:configure checking for sys/time.h... (cached) yes |
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| 805 | :info:configure checking for sys/times.h... yes |
|---|
| 806 | :info:configure checking for sys/utsname.h... yes |
|---|
| 807 | :info:configure checking for unistd.h... (cached) yes |
|---|
| 808 | :info:configure checking for utime.h... yes |
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| 809 | :info:configure checking for arpa/inet.h... yes |
|---|
| 810 | :info:configure checking for elf.h... no |
|---|
| 811 | :info:configure checking for features.h... no |
|---|
| 812 | :info:configure checking for floatingpoint.h... no |
|---|
| 813 | :info:configure checking for langinfo.h... yes |
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| 814 | :info:configure checking for netdb.h... yes |
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| 815 | :info:configure checking for netinet/in.h... yes |
|---|
| 816 | :info:configure checking for sys/param.h... (cached) yes |
|---|
| 817 | :info:configure checking for stdalign.h... yes |
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| 818 | :info:configure checking for errno.h... yes |
|---|
| 819 | :info:configure checking for inttypes.h... (cached) yes |
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| 820 | :info:configure checking for limits.h... yes |
|---|
| 821 | :info:configure checking for locale.h... yes |
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| 822 | :info:configure checking for stdarg.h... yes |
|---|
| 823 | :info:configure checking for stdbool.h... yes |
|---|
| 824 | :info:configure checking for stdint.h... (cached) yes |
|---|
| 825 | :info:configure checking for string.h... (cached) yes |
|---|
| 826 | :info:configure checking for /opt/local/bin/clang-mp-14 options needed to detect all undeclared functions... -fno-builtin |
|---|
| 827 | :info:configure checking whether setjmp.h is POSIX.1 compatible... yes |
|---|
| 828 | :info:configure checking whether sigsetjmp is declared... yes |
|---|
| 829 | :info:configure checking whether siglongjmp is declared... yes |
|---|
| 830 | :info:configure checking for GNU C library with version >= 2... no |
|---|
| 831 | :info:configure checking for uint64_t... yes |
|---|
| 832 | :info:configure checking for int64_t... yes |
|---|
| 833 | :info:configure checking for int_fast64_t... yes |
|---|
| 834 | :info:configure checking for pid_t... yes |
|---|
| 835 | :info:configure checking for size_t... yes |
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| 836 | :info:configure checking whether SIZE_MAX is declared... yes |
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| 837 | :info:configure checking for blkcnt_t... yes |
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| 838 | :info:configure checking for type of socket length... socklen_t * |
|---|
| 839 | :info:configure checking for stack_t... yes |
|---|
| 840 | :info:configure checking for intptr_t... yes |
|---|
| 841 | :info:configure checking for uintptr_t... yes |
|---|
| 842 | :info:configure checking whether byte ordering is bigendian... no |
|---|
| 843 | :info:configure checking for an ANSI C-conforming const... yes |
|---|
| 844 | :info:configure checking for inline... inline |
|---|
| 845 | :info:configure checking size of int... 4 |
|---|
| 846 | :info:configure checking size of long... 8 |
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| 847 | :info:configure checking size of long long... 8 |
|---|
| 848 | :info:configure checking size of double... 8 |
|---|
| 849 | :info:configure checking size of size_t... 8 |
|---|
| 850 | :info:configure checking for C stack direction... down |
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| 851 | :info:configure checking size of long double... 16 |
|---|
| 852 | :info:configure checking whether we can compute C Make dependencies... yes, using $(CC) -MM |
|---|
| 853 | :info:configure checking whether /opt/local/bin/clang-mp-14 supports -c -o FILE.lo... yes |
|---|
| 854 | :info:configure checking for /opt/local/bin/clang-mp-14 option to support OpenMP... -fopenmp |
|---|
| 855 | :info:configure checking how to get verbose linking output from /opt/local/bin/gfortran-mp-12... configure: WARNING: compilation failed |
|---|
| 856 | :info:configure checking for Fortran libraries of /opt/local/bin/gfortran-mp-12... |
|---|
| 857 | :info:configure checking how to get verbose linking output from /opt/local/bin/clang-mp-14... configure: WARNING: cannot determine how to obtain linking information from /opt/local/bin/clang-mp-14 |
|---|
| 858 | :info:configure checking for C libraries of /opt/local/bin/clang-mp-14... |
|---|
| 859 | :info:configure checking for dummy main to link with Fortran libraries... none |
|---|
| 860 | :info:configure checking for Fortran name-mangling scheme... configure: error: in `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1': |
|---|
| 861 | :info:configure configure: error: cannot compile a simple Fortran program |
|---|
| 862 | :info:configure See `config.log' for more details |
|---|
| 863 | :info:configure Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1" && ./configure --prefix=/opt/local/Library/Frameworks --enable-openmp --enable-R-framework --enable-memory-profiling --enable-R-shlib --enable-BLAS-shlib --without-tcltk --with-cairo --disable-java --with-included-gettext --with-blas="-framework Accelerate" --with-lapack --with-recommended-packages --with-x --x-include=/opt/local/include/X11 --x-lib=/opt/local/lib |
|---|
| 864 | :info:configure Exit code: 1 |
|---|
| 865 | :error:configure Failed to configure R: consult /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1/config.log |
|---|
| 866 | :error:configure Failed to configure R: configure failure: command execution failed |
|---|
| 867 | :debug:configure Error code: NONE |
|---|
| 868 | :debug:configure Backtrace: configure failure: command execution failed |
|---|
| 869 | :debug:configure while executing |
|---|
| 870 | :debug:configure "$procedure $targetname" |
|---|
| 871 | :error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/main.log for details. |
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