py25-numpy fails in staging on 10.6

[jowens (John Owens)]

First the non-verbose, then the verbose.

$ sudo port install py25-numpy
--->  Computing dependencies for py25-numpy
--->  Staging py25-numpy into destroot
Error: Target org.macports.destroot returned: error renaming "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-numpy/work/destroot/opt/local/bin/f2py": no such file or directory

$ sudo port -v install py25-numpy ---> Computing dependencies for py25-numpy. ---> Staging py25-numpy into destroot . missing (directory not created: File exists) ./Applications missing (directory not created: File exists) ./Developer missing (directory not created: File exists) ./Library missing (directory not created: File exists) Running from numpy source directory. non-existing path in 'numpy/distutils': 'site.cfg' F2PY Version 2 blas_opt_info:

FOUND:

extra_link_args = ['-Wl,-framework', '-Wl,Accelerate'] define_macros = [('NO_ATLAS_INFO', 3)] extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/vecLib.framework/Headers']

lapack_opt_info:

FOUND:

extra_link_args = ['-Wl,-framework', '-Wl,Accelerate'] define_macros = [('NO_ATLAS_INFO', 3)] extra_compile_args = -msse3?

running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src building py_modules sources building library "npymath" sources building extension "numpy.core._sort" sources

adding 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/config.h' to sources. adding 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/numpyconfig.h' to sources.

executing numpy/core/code_generators/generate_numpy_api.py

adding 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/multiarray_api.h' to sources.

numpy.core - nothing done with h_files = ['build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/config.h', 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/numpyconfig.h', 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/multiarray_api.h'] building extension "numpy.core.multiarray" sources

adding 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/config.h' to sources. adding 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/numpyconfig.h' to sources.

executing numpy/core/code_generators/generate_numpy_api.py

adding 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/multiarray_api.h' to sources. adding 'build/src.macosx-10.6-i386-2.5/numpy/core/src' to include_dirs.

numpy.core - nothing done with h_files = ['build/src.macosx-10.6-i386-2.5/numpy/core/src/scalartypes.inc', 'build/src.macosx-10.6-i386-2.5/numpy/core/src/arraytypes.inc', 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/config.h', 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/numpyconfig.h', 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/multiarray_api.h'] building extension "numpy.core.umath" sources

adding 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/config.h' to sources. adding 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/numpyconfig.h' to sources.

executing numpy/core/code_generators/generate_ufunc_api.py

adding 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/ufunc_api.h' to sources. adding 'build/src.macosx-10.6-i386-2.5/numpy/core/src' to include_dirs.

numpy.core - nothing done with h_files = ['build/src.macosx-10.6-i386-2.5/numpy/core/src/scalartypes.inc', 'build/src.macosx-10.6-i386-2.5/numpy/core/src/arraytypes.inc', 'build/src.macosx-10.6-i386-2.5/numpy/core/src/umath_funcs.inc', 'build/src.macosx-10.6-i386-2.5/numpy/core/src/umath_loops.inc', 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/config.h', 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/numpyconfig.h', 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/ufunc_api.h'] building extension "numpy.core.scalarmath" sources

adding 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/config.h' to sources. adding 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/numpyconfig.h' to sources.

executing numpy/core/code_generators/generate_numpy_api.py

adding 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/multiarray_api.h' to sources.

executing numpy/core/code_generators/generate_ufunc_api.py

adding 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/ufunc_api.h' to sources.

numpy.core - nothing done with h_files = ['build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/config.h', 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/numpyconfig.h', 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/multiarray_api.h', 'build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/ufunc_api.h'] building extension "numpy.core._dotblas" sources

adding 'numpy/core/blasdot/_dotblas.c' to sources.

building extension "numpy.core.umath_tests" sources building extension "numpy.lib._compiled_base" sources building extension "numpy.numarray._capi" sources building extension "numpy.fft.fftpack_lite" sources building extension "numpy.linalg.lapack_lite" sources

adding 'numpy/linalg/lapack_litemodule.c' to sources. adding 'numpy/linalg/python_xerbla.c' to sources.

building extension "numpy.random.mtrand" sources /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-numpy/work/numpy-1.3.0/numpy/distutils/command/config.py:39: DeprecationWarning: +++++++++++++++++++++++++++++++++++++++++++++++++ Usage of try_run is deprecated: please do not use it anymore, and avoid configuration checks involving running executable on the target machine. +++++++++++++++++++++++++++++++++++++++++++++++++

DeprecationWarning)

customize NAGFCompiler Could not locate executable f95 customize AbsoftFCompiler Could not locate executable f90 Could not locate executable f77 customize IBMFCompiler Could not locate executable xlf90 Could not locate executable xlf customize IntelFCompiler Could not locate executable ifort Could not locate executable ifc customize GnuFCompiler Could not locate executable g77 customize Gnu95FCompiler Could not locate executable gfortran customize G95FCompiler Could not locate executable g95 don't know how to compile Fortran code on platform 'posix' C compiler: /usr/bin/gcc-4.2 -fno-strict-aliasing -mno-fused-madd -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes

compile options: '-Inumpy/core/src -Inumpy/core/include -I/opt/local/include/python2.5 -c' gcc-4.2: _configtest.c /usr/bin/gcc-4.2 _configtest.o -o _configtest _configtest failure. removing: _configtest.c _configtest.o _configtest building data_files sources running build_py copying numpy/version.py -> build/lib.macosx-10.6-i386-2.5/numpy copying build/src.macosx-10.6-i386-2.5/numpy/config.py -> build/lib.macosx-10.6-i386-2.5/numpy copying build/src.macosx-10.6-i386-2.5/numpy/distutils/config.py -> build/lib.macosx-10.6-i386-2.5/numpy/distutils running build_clib customize UnixCCompiler customize UnixCCompiler using build_clib running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext running scons running build_scripts

adding 'build/scripts.macosx-10.6-i386-2.5/f2py2.5' to scripts

running install_lib copying build/lib.macosx-10.6-i386-2.5/numpy/config.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-numpy/work/destroot/opt/local/lib/python2.5/site-packages/numpy copying build/lib.macosx-10.6-i386-2.5/numpy/distutils/config.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-numpy/work/destroot/opt/local/lib/python2.5/site-packages/numpy/distutils copying build/lib.macosx-10.6-i386-2.5/numpy/version.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-numpy/work/destroot/opt/local/lib/python2.5/site-packages/numpy byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-numpy/work/destroot/opt/local/lib/python2.5/site-packages/numpy/config.py to config.pyc byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-numpy/work/destroot/opt/local/lib/python2.5/site-packages/numpy/distutils/config.py to config.pyc byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-numpy/work/destroot/opt/local/lib/python2.5/site-packages/numpy/version.py to version.pyc running install_scripts changing mode of /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-numpy/work/destroot/opt/local/bin/f2py2.5 to 755 running install_data copying build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/multiarray_api.h -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-numpy/work/destroot/opt/local/lib/python2.5/site-packages/numpy/core/include/numpy copying build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/multiarray_api.txt -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-numpy/work/destroot/opt/local/lib/python2.5/site-packages/numpy/core/include/numpy copying build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/ufunc_api.h -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-numpy/work/destroot/opt/local/lib/python2.5/site-packages/numpy/core/include/numpy copying build/src.macosx-10.6-i386-2.5/numpy/core/include/numpy/ufunc_api.txt -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-numpy/work/destroot/opt/local/lib/python2.5/site-packages/numpy/core/include/numpy running install_egg_info Removing /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-numpy/work/destroot/opt/local/lib/python2.5/site-packages/numpy-1.3.0-py2.5.egg-info Writing /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-numpy/work/destroot/opt/local/lib/python2.5/site-packages/numpy-1.3.0-py2.5.egg-info Error: Target org.macports.destroot returned: error renaming "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-numpy/work/destroot/opt/local/bin/f2py": no such file or directory Warning: the following items did not execute (for py25-numpy): org.macports.activate org.macports.destroot org.macports.install Error: Status 1 encountered during processing.