Opened 14 years ago

Last modified 14 years ago

#25619 closed defect

atlas build failure — at Version 2

Reported by: bertagna@… Owned by: jameskyle@…
Priority: Normal Milestone:
Component: ports Version: 1.9.1
Keywords: Cc:
Port: atlas

Description (last modified by jmroot (Joshua Root))

hello, I'm trying to install a bioinformatics software program on my MacBook (Snow Lepord, 10.6.4) called STAMP (Statistical Analysis of Metagenomics Profiles). One of the installations required is py26-numpy. I entered the following;

c-67-170-178-177:~ anthonybertagnolli$ sudo port install py26-numpy
Password:
--->  Computing dependencies for py26-numpy
--->  Dependencies to be installed: atlas fftw-3 py26-nose
--->  Building atlas
Error: Target org.macports.build returned: shell command failed
Log for atlas is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log
Error: The following dependencies failed to build: atlas fftw-3 py26-nose
Error: Status 1 encountered during processing.
To report a bug, see <http://guide.macports.org/#project.tickets>

Not sure what the appropriate action is at this point, would appreciate any help in getting past a shell command failure. I have been using X11 for most of my installation work, tried to install numpy using the terminal, but I got the same the result. Not sure if this even matters, just a piece of information that i thought might be useful. Thanks,

-Anthony

Change History (3)

comment:1 Changed 14 years ago by fracai

The "shell command failed" is a somewhat generic error that occurs when the build failed. Please upload the log file indicated in your output. /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log

Also, try updating your Portfiles ( port selfupdate ) as atlas was having problems about a week ago that have since been cleared up.

comment:2 Changed 14 years ago by jmroot (Joshua Root)

Description: modified (diff)
Milestone: MacPorts 2.0.0
Owner: changed from macports-tickets@… to jameskyle@…
Port: atlas added
Summary: shell command fail while installing py26-numpyatlas build failure

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Changed 14 years ago by bertagna@…

Attachment: main.log added

log file

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