Opened 13 years ago
Last modified 12 years ago
#31084 closed defect
py26-scipy failures on Lion — at Initial Version
| Reported by: | howarth@… | Owned by: | macports-tickets@… |
|---|---|---|---|
| Priority: | Normal | Milestone: | |
| Component: | ports | Version: | 2.0.2 |
| Keywords: | Cc: | jmr ram | |
| Port: | py26-scipy |
Description
The py26-scipy package (and other python variants) show new failures on Lion...
[MacPro-3:~] howarth% python2.6 Python 2.6.7 (r267:88850, Aug 26 2011, 21:02:58) [GCC 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2335.15.00)] on darwin Type "help", "copyright", "credits" or "license" for more information.
import scipy scipy.test()
Running unit tests for scipy NumPy version 1.6.1 NumPy is installed in /opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy SciPy version 0.9.0 SciPy is installed in /opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/scipy Python version 2.6.7 (r267:88850, Aug 26 2011, 21:02:58) [GCC 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2335.15.00)] nose version 1.0.0 .............................................................................................................................................................................................................K......................................................................................................................K..K.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................F..FF......................................................................................................................................SSSSSS......SSSSSS......SSSS.....................................................F....FF.....S................................................................................................................................................................................................................K...........................................................................................................................................................................................SSSSS.........S.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................../opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/scipy/sparse/linalg/dsolve/linsolve.py:259: DeprecationWarning: scipy.sparse.linalg.dsolve.umfpack will be removed, install scikits.umfpack instead
' install scikits.umfpack instead', DeprecationWarning )
../opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/scipy/sparse/linalg/dsolve/linsolve.py:75: DeprecationWarning: scipy.sparse.linalg.dsolve.umfpack will be removed, install scikits.umfpack instead
' install scikits.umfpack instead', DeprecationWarning )
................K.K..KK.KK...........................................................................................................................................K...............................................................K...........................................................................................................................................................KK...............................................................................................................................................................................................................................................................................................................................................................................................................................K.K........................................................................................................................................................................................................................................................................................................................................................................................K........K.........SSSSSSS................................................................................................................................................................................................................................................................................................................................................................................................../opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/scipy/stats/distributions.py:3546: RuntimeWarning: overflow encountered in exp
return exp(c*x-exp(x)-gamln(c))
................................./opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/scipy/stats/distributions.py:3955: RuntimeWarning: invalid value encountered in sqrt
vals = 2*(bt+1.0)*sqrt(b-2.0)/((b-3.0)*sqrt(b))
.........................................................................................................................................................................................................................................................................................................S..............................................................................................................................................................................................F............................................................................................................................................................................................................................................................................................................................................................................................................. ====================================================================== FAIL: test_asum (test_blas.TestFBLAS1Simple)
Traceback (most recent call last):
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/scipy/lib/blas/tests/test_blas.py", line 58, in test_asum
assert_almost_equal(f([3,-4,5]),12)
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/testing/utils.py", line 468, in assert_almost_equal
raise AssertionError(msg)
AssertionError: Arrays are not almost equal to 7 decimals
ACTUAL: 0.0 DESIRED: 12
====================================================================== FAIL: test_dot (test_blas.TestFBLAS1Simple)
Traceback (most recent call last):
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/scipy/lib/blas/tests/test_blas.py", line 67, in test_dot
assert_almost_equal(f([3,-4,5],[2,5,1]),-9)
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/testing/utils.py", line 468, in assert_almost_equal
raise AssertionError(msg)
AssertionError: Arrays are not almost equal to 7 decimals
ACTUAL: 0.0 DESIRED: -9
====================================================================== FAIL: test_nrm2 (test_blas.TestFBLAS1Simple)
Traceback (most recent call last):
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/scipy/lib/blas/tests/test_blas.py", line 78, in test_nrm2
assert_almost_equal(f([3,-4,5]),math.sqrt(50))
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/testing/utils.py", line 468, in assert_almost_equal
raise AssertionError(msg)
AssertionError: Arrays are not almost equal to 7 decimals
ACTUAL: 0.0 DESIRED: 7.0710678118654755
====================================================================== FAIL: test_asum (test_blas.TestFBLAS1Simple)
Traceback (most recent call last):
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/scipy/linalg/tests/test_blas.py", line 57, in test_asum
assert_almost_equal(f([3,-4,5]),12)
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/testing/utils.py", line 468, in assert_almost_equal
raise AssertionError(msg)
AssertionError: Arrays are not almost equal to 7 decimals
ACTUAL: 0.0 DESIRED: 12
====================================================================== FAIL: test_dot (test_blas.TestFBLAS1Simple)
Traceback (most recent call last):
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/scipy/linalg/tests/test_blas.py", line 66, in test_dot
assert_almost_equal(f([3,-4,5],[2,5,1]),-9)
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/testing/utils.py", line 468, in assert_almost_equal
raise AssertionError(msg)
AssertionError: Arrays are not almost equal to 7 decimals
ACTUAL: 0.0 DESIRED: -9
====================================================================== FAIL: test_nrm2 (test_blas.TestFBLAS1Simple)
Traceback (most recent call last):
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/scipy/linalg/tests/test_blas.py", line 83, in test_nrm2
assert_almost_equal(f([3,-4,5]),math.sqrt(50))
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/testing/utils.py", line 468, in assert_almost_equal
raise AssertionError(msg)
AssertionError: Arrays are not almost equal to 7 decimals
ACTUAL: 0.0 DESIRED: 7.0710678118654755
====================================================================== FAIL: test_expon (test_morestats.TestAnderson)
Traceback (most recent call last):
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/scipy/stats/tests/test_morestats.py", line 72, in test_expon
assert_array_less(crit[:-1], A)
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/testing/utils.py", line 869, in assert_array_less
header='Arrays are not less-ordered')
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/testing/utils.py", line 613, in assert_array_compare
chk_same_position(x_id, y_id, hasval='inf')
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/testing/utils.py", line 588, in chk_same_position
raise AssertionError(msg)
AssertionError: Arrays are not less-ordered
x and y inf location mismatch:
x: array([ 0.911, 1.065, 1.325, 1.587]) y: array(inf)
Ran 4722 tests in 85.682s
FAILED (KNOWNFAIL=18, SKIP=31, failures=7) <nose.result.TextTestResult run=4722 errors=0 failures=7>
The issue and a fix is described in http://mail.scipy.org/pipermail/scipy-dev/2011-August/016467.html.
Portfile.diff to pass "-ff2c" on FFLAGS.