Changes between Initial Version and Version 1 of Ticket #38885


Ignore:
Timestamp:
Apr 22, 2013, 1:15:05 PM (11 years ago)
Author:
ci42
Comment:

This was not a clean attempt. Please try again 

$ sudo port clean cufflinks
$ sudo port selfupdate
$ sudo port install cufflinks

and attach the log file if it fails.

In the future please remember to Cc the maintainer, don't paste the log file in the description field and note that priority 'high' is reserved for MacPorts team members.

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #38885

    • Property Priority changed from High to Normal
    • Property Owner changed from macports-tickets@… to haroldpimentel@…
    • Property Summary changed from failed install of cufflinks 0.9.3 to cufflinks @ 0.9.3: build fails
    • Property Port 0.9.3 removed

  • Ticket #38885 – Description

    initial v1  
    11installing cufflinks 0.9.3 failed. Here is the main.log file
    2 
    3 ------
    4 version:1
    5 :debug:main epoch: in tree: 0 installed: 0
    6 :debug:main zlib 1.2.7_0 exists in the ports tree
    7 :debug:main zlib 1.2.7_0  is the latest installed
    8 :debug:main zlib 1.2.7_0  is active
    9 :debug:main Merging existing variants '' into variants
    10 :debug:main new fully merged portvariants:
    11 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib
    12 :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
    13 :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
    14 :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
    15 :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
    16 :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl
    17 :debug:main adding the default universal variant
    18 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    19 :debug:main No need to upgrade! zlib 1.2.7_0 >= zlib 1.2.7_0
    20 :debug:main epoch: in tree: 0 installed: 0
    21 :debug:main samtools 0.1.18_0 exists in the ports tree
    22 :debug:main samtools 0.1.18_0  is the latest installed
    23 :debug:main samtools 0.1.18_0  is active
    24 :debug:main Merging existing variants '' into variants
    25 :debug:main new fully merged portvariants:
    26 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/samtools
    27 :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
    28 :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
    29 :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
    30 :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
    31 :debug:main universal_variant is false, so not adding the default universal variant
    32 :debug:main No need to upgrade! samtools 0.1.18_0 >= samtools 0.1.18_0
    33 :debug:main epoch: in tree: 0 installed: 0
    34 :debug:main ncurses 5.9_2 exists in the ports tree
    35 :debug:main ncurses 5.9_2  is the latest installed
    36 :debug:main ncurses 5.9_2  is active
    37 :debug:main Merging existing variants '' into variants
    38 :debug:main new fully merged portvariants:
    39 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses
    40 :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
    41 :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
    42 :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
    43 :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
    44 :debug:main adding the default universal variant
    45 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    46 :debug:main No need to upgrade! ncurses 5.9_2 >= ncurses 5.9_2
    47 :debug:main epoch: in tree: 0 installed: 0
    48 :debug:main boost 1.53.0_1 exists in the ports tree
    49 :debug:main boost 1.53.0_1 +no_single+no_static+python27 is the latest installed
    50 :debug:main boost 1.53.0_1 +no_single+no_static+python27 is active
    51 :debug:main Merging existing variants '+no_single+no_static+python27' into variants
    52 :debug:main new fully merged portvariants: no_static + no_single + python27 +
    53 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/boost
    54 :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
    55 :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
    56 :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
    57 :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
    58 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    59 :debug:main universal variant already exists, so not adding the default one
    60 :debug:main Executing variant python27 provides python27
    61 :debug:main Executing variant no_static provides no_static
    62 :debug:main Executing variant no_single provides no_single
    63 :debug:main No need to upgrade! boost 1.53.0_1 >= boost 1.53.0_1
    64 :debug:main epoch: in tree: 0 installed: 0
    65 :debug:main expat 2.1.0_0 exists in the ports tree
    66 :debug:main expat 2.1.0_0  is the latest installed
    67 :debug:main expat 2.1.0_0  is active
    68 :debug:main Merging existing variants '' into variants
    69 :debug:main new fully merged portvariants:
    70 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat
    71 :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
    72 :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
    73 :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
    74 :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
    75 :debug:main adding the default universal variant
    76 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    77 :debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0
    78 :debug:main epoch: in tree: 0 installed: 0
    79 :debug:main bzip2 1.0.6_0 exists in the ports tree
    80 :debug:main bzip2 1.0.6_0  is the latest installed
    81 :debug:main bzip2 1.0.6_0  is active
    82 :debug:main Merging existing variants '' into variants
    83 :debug:main new fully merged portvariants:
    84 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/bzip2
    85 :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
    86 :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
    87 :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
    88 :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
    89 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    90 :debug:main universal variant already exists, so not adding the default one
    91 :debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0
    92 :debug:main epoch: in tree: 0 installed: 0
    93 :debug:main libiconv 1.14_0 exists in the ports tree
    94 :debug:main libiconv 1.14_0  is the latest installed
    95 :debug:main libiconv 1.14_0  is active
    96 :debug:main Merging existing variants '' into variants
    97 :debug:main new fully merged portvariants:
    98 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv
    99 :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
    100 :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
    101 :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
    102 :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
    103 :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    104 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    105 :debug:main universal variant already exists, so not adding the default one
    106 :debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0
    107 :debug:main epoch: in tree: 0 installed: 0
    108 :debug:main icu 49.1.2_1 exists in the ports tree
    109 :debug:main icu 49.1.2_1  is the latest installed
    110 :debug:main icu 49.1.2_1  is active
    111 :debug:main Merging existing variants '' into variants
    112 :debug:main new fully merged portvariants:
    113 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/icu
    114 :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
    115 :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
    116 :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
    117 :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
    118 :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    119 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    120 :debug:main universal variant already exists, so not adding the default one
    121 :debug:main No need to upgrade! icu 49.1.2_1 >= icu 49.1.2_1
    122 :debug:main epoch: in tree: 2 installed: 2
    123 :debug:main python27 2.7.3_1 exists in the ports tree
    124 :debug:main python27 2.7.3_1  is the latest installed
    125 :debug:main python27 2.7.3_1  is active
    126 :debug:main Merging existing variants '' into variants
    127 :debug:main new fully merged portvariants:
    128 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/python27
    129 :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
    130 :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
    131 :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
    132 :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
    133 :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
    134 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    135 :debug:main universal variant already exists, so not adding the default one
    136 :debug:main No need to upgrade! python27 2.7.3_1 >= python27 2.7.3_1
    137 :debug:main epoch: in tree: 0 installed: 0
    138 :debug:main gettext 0.18.2.1_0 exists in the ports tree
    139 :debug:main gettext 0.18.2.1_0  is the latest installed
    140 :debug:main gettext 0.18.2.1_0  is active
    141 :debug:main Merging existing variants '' into variants
    142 :debug:main new fully merged portvariants:
    143 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext
    144 :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
    145 :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
    146 :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
    147 :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
    148 :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
    149 :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    150 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    151 :debug:main compiler clang 425.0.24 not blacklisted because does not match {clang < 211.10.1}
    152 :debug:main universal variant already exists, so not adding the default one
    153 :debug:main No need to upgrade! gettext 0.18.2.1_0 >= gettext 0.18.2.1_0
    154 :debug:main epoch: in tree: 1 installed: 1
    155 :debug:main openssl 1.0.1e_1 exists in the ports tree
    156 :debug:main openssl 1.0.1e_1  is the latest installed
    157 :debug:main openssl 1.0.1e_1  is active
    158 :debug:main Merging existing variants '' into variants
    159 :debug:main new fully merged portvariants:
    160 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/openssl
    161 :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
    162 :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
    163 :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
    164 :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
    165 :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    166 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    167 :debug:main universal variant already exists, so not adding the default one
    168 :debug:main No need to upgrade! openssl 1.0.1e_1 >= openssl 1.0.1e_1
    169 :debug:main epoch: in tree: 0 installed: 0
    170 :debug:main sqlite3 3.7.16_0 exists in the ports tree
    171 :debug:main sqlite3 3.7.16_0  is the latest installed
    172 :debug:main sqlite3 3.7.16_0  is active
    173 :debug:main Merging existing variants '' into variants
    174 :debug:main new fully merged portvariants:
    175 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/sqlite3
    176 :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
    177 :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
    178 :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
    179 :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
    180 :debug:main adding the default universal variant
    181 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    182 :debug:main No need to upgrade! sqlite3 3.7.16_0 >= sqlite3 3.7.16_0
    183 :debug:main epoch: in tree: 20090923 installed: 20090923
    184 :debug:main libedit 20121213-3.0_0 exists in the ports tree
    185 :debug:main libedit 20121213-3.0_0  is the latest installed
    186 :debug:main libedit 20121213-3.0_0  is active
    187 :debug:main Merging existing variants '' into variants
    188 :debug:main new fully merged portvariants:
    189 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libedit
    190 :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
    191 :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
    192 :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
    193 :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
    194 :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    195 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    196 :debug:main universal variant already exists, so not adding the default one
    197 :debug:main No need to upgrade! libedit 20121213-3.0_0 >= libedit 20121213-3.0_0
    198 :debug:main epoch: in tree: 0 installed: 0
    199 :debug:main db46 4.6.21_7 exists in the ports tree
    200 :debug:main db46 4.6.21_7  is the latest installed
    201 :debug:main db46 4.6.21_7  is active
    202 :debug:main Merging existing variants '' into variants
    203 :debug:main new fully merged portvariants:
    204 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/db46
    205 :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
    206 :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
    207 :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
    208 :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
    209 :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    210 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    211 :debug:main universal variant already exists, so not adding the default one
    212 :debug:main No need to upgrade! db46 4.6.21_7 >= db46 4.6.21_7
    213 :debug:main epoch: in tree: 0 installed: 0
    214 :debug:main python_select 0.3_2 exists in the ports tree
    215 :debug:main python_select 0.3_2  is the latest installed
    216 :debug:main python_select 0.3_2  is active
    217 :debug:main Merging existing variants '' into variants
    218 :debug:main new fully merged portvariants:
    219 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/python_select
    220 :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
    221 :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
    222 :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
    223 :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
    224 :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
    225 :debug:main universal_variant is false, so not adding the default universal variant
    226 :debug:main No need to upgrade! python_select 0.3_2 >= python_select 0.3_2
    227 :msg:main --->  Computing dependencies for cufflinks:info:main .:debug:main cufflinks has no conflicts
    228 :debug:main Searching for dependency: zlib
    229 :debug:main Found Dependency: receipt exists for zlib
    230 :debug:main Searching for dependency: samtools
    231 :debug:main Found Dependency: receipt exists for samtools
    232 :debug:main Searching for dependency: boost
    233 :debug:main Found Dependency: receipt exists for boost
    234 :msg:main
    235 :debug:main Executing org.macports.main (cufflinks)
    236 :debug:main changing euid/egid - current euid: 0 - current egid: 0
    237 :debug:main egid changed to: 501
    238 :debug:main euid changed to: 503
    239 :debug:main Skipping completed org.macports.archivefetch (cufflinks)
    240 :debug:main Privilege de-escalation not attempted as not running as root.
    241 :debug:main Skipping completed org.macports.fetch (cufflinks)
    242 :debug:main Privilege de-escalation not attempted as not running as root.
    243 :debug:main Skipping completed org.macports.checksum (cufflinks)
    244 :debug:main Privilege de-escalation not attempted as not running as root.
    245 :debug:main Skipping completed org.macports.extract (cufflinks)
    246 :debug:main Privilege de-escalation not attempted as not running as root.
    247 :debug:main Skipping completed org.macports.patch (cufflinks)
    248 :debug:main Privilege de-escalation not attempted as not running as root.
    249 :debug:main Skipping completed org.macports.configure (cufflinks)
    250 :debug:main Privilege de-escalation not attempted as not running as root.
    251 :debug:build build phase started at Mon Apr 22 08:16:49 EDT 2013
    252 :notice:build --->  Building cufflinks
    253 :debug:build Executing org.macports.build (cufflinks)
    254 :debug:build Environment: CPATH='/opt/local/include' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.8'
    255 :debug:build Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/cufflinks-0.9.3" && /usr/bin/make -j24 -w all'
    256 :debug:build Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/cufflinks-0.9.3" && /usr/bin/make -j24 -w all
    257 :info:build make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/cufflinks-0.9.3'
    258 :info:build /usr/bin/make  all-recursive
    259 :info:build make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/cufflinks-0.9.3'
    260 :info:build Making all in src
    261 :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/cufflinks-0.9.3/src'
    262 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT clustering.o -MD -MP -MF ".deps/clustering.Tpo" -c -o clustering.o clustering.cpp; \
    263 :info:build     then mv -f ".deps/clustering.Tpo" ".deps/clustering.Po"; else rm -f ".deps/clustering.Tpo"; exit 1; fi
    264 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT differential.o -MD -MP -MF ".deps/differential.Tpo" -c -o differential.o differential.cpp; \
    265 :info:build     then mv -f ".deps/differential.Tpo" ".deps/differential.Po"; else rm -f ".deps/differential.Tpo"; exit 1; fi
    266 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT common.o -MD -MP -MF ".deps/common.Tpo" -c -o common.o common.cpp; \
    267 :info:build     then mv -f ".deps/common.Tpo" ".deps/common.Po"; else rm -f ".deps/common.Tpo"; exit 1; fi
    268 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT assemble.o -MD -MP -MF ".deps/assemble.Tpo" -c -o assemble.o assemble.cpp; \
    269 :info:build     then mv -f ".deps/assemble.Tpo" ".deps/assemble.Po"; else rm -f ".deps/assemble.Tpo"; exit 1; fi
    270 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT abundances.o -MD -MP -MF ".deps/abundances.Tpo" -c -o abundances.o abundances.cpp; \
    271 :info:build     then mv -f ".deps/abundances.Tpo" ".deps/abundances.Po"; else rm -f ".deps/abundances.Tpo"; exit 1; fi
    272 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT scaffolds.o -MD -MP -MF ".deps/scaffolds.Tpo" -c -o scaffolds.o scaffolds.cpp; \
    273 :info:build     then mv -f ".deps/scaffolds.Tpo" ".deps/scaffolds.Po"; else rm -f ".deps/scaffolds.Tpo"; exit 1; fi
    274 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT hits.o -MD -MP -MF ".deps/hits.Tpo" -c -o hits.o hits.cpp; \
    275 :info:build     then mv -f ".deps/hits.Tpo" ".deps/hits.Po"; else rm -f ".deps/hits.Tpo"; exit 1; fi
    276 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT genes.o -MD -MP -MF ".deps/genes.Tpo" -c -o genes.o genes.cpp; \
    277 :info:build     then mv -f ".deps/genes.Tpo" ".deps/genes.Po"; else rm -f ".deps/genes.Tpo"; exit 1; fi
    278 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT bundles.o -MD -MP -MF ".deps/bundles.Tpo" -c -o bundles.o bundles.cpp; \
    279 :info:build     then mv -f ".deps/bundles.Tpo" ".deps/bundles.Po"; else rm -f ".deps/bundles.Tpo"; exit 1; fi
    280 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT filters.o -MD -MP -MF ".deps/filters.Tpo" -c -o filters.o filters.cpp; \
    281 :info:build     then mv -f ".deps/filters.Tpo" ".deps/filters.Po"; else rm -f ".deps/filters.Tpo"; exit 1; fi
    282 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT scaffold_graph.o -MD -MP -MF ".deps/scaffold_graph.Tpo" -c -o scaffold_graph.o scaffold_graph.cpp; \
    283 :info:build     then mv -f ".deps/scaffold_graph.Tpo" ".deps/scaffold_graph.Po"; else rm -f ".deps/scaffold_graph.Tpo"; exit 1; fi
    284 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT matching_merge.o -MD -MP -MF ".deps/matching_merge.Tpo" -c -o matching_merge.o matching_merge.cpp; \
    285 :info:build     then mv -f ".deps/matching_merge.Tpo" ".deps/matching_merge.Po"; else rm -f ".deps/matching_merge.Tpo"; exit 1; fi
    286 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT graph_optimize.o -MD -MP -MF ".deps/graph_optimize.Tpo" -c -o graph_optimize.o graph_optimize.cpp; \
    287 :info:build     then mv -f ".deps/graph_optimize.Tpo" ".deps/graph_optimize.Po"; else rm -f ".deps/graph_optimize.Tpo"; exit 1; fi
    288 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT biascorrection.o -MD -MP -MF ".deps/biascorrection.Tpo" -c -o biascorrection.o biascorrection.cpp; \
    289 :info:build     then mv -f ".deps/biascorrection.Tpo" ".deps/biascorrection.Po"; else rm -f ".deps/biascorrection.Tpo"; exit 1; fi
    290 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT jensen_shannon.o -MD -MP -MF ".deps/jensen_shannon.Tpo" -c -o jensen_shannon.o jensen_shannon.cpp; \
    291 :info:build     then mv -f ".deps/jensen_shannon.Tpo" ".deps/jensen_shannon.Po"; else rm -f ".deps/jensen_shannon.Tpo"; exit 1; fi
    292 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT GFaSeqGet.o -MD -MP -MF ".deps/GFaSeqGet.Tpo" -c -o GFaSeqGet.o GFaSeqGet.cpp; \
    293 :info:build     then mv -f ".deps/GFaSeqGet.Tpo" ".deps/GFaSeqGet.Po"; else rm -f ".deps/GFaSeqGet.Tpo"; exit 1; fi
    294 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT gff.o -MD -MP -MF ".deps/gff.Tpo" -c -o gff.o gff.cpp; \
    295 :info:build     then mv -f ".deps/gff.Tpo" ".deps/gff.Po"; else rm -f ".deps/gff.Tpo"; exit 1; fi
    296 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT gtf_tracking.o -MD -MP -MF ".deps/gtf_tracking.Tpo" -c -o gtf_tracking.o gtf_tracking.cpp; \
    297 :info:build     then mv -f ".deps/gtf_tracking.Tpo" ".deps/gtf_tracking.Po"; else rm -f ".deps/gtf_tracking.Tpo"; exit 1; fi
    298 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT cufflinks.o -MD -MP -MF ".deps/cufflinks.Tpo" -c -o cufflinks.o cufflinks.cpp; \
    299 :info:build     then mv -f ".deps/cufflinks.Tpo" ".deps/cufflinks.Po"; else rm -f ".deps/cufflinks.Tpo"; exit 1; fi
    300 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT cuffcompare.o -MD -MP -MF ".deps/cuffcompare.Tpo" -c -o cuffcompare.o cuffcompare.cpp; \
    301 :info:build     then mv -f ".deps/cuffcompare.Tpo" ".deps/cuffcompare.Po"; else rm -f ".deps/cuffcompare.Tpo"; exit 1; fi
    302 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT cuffdiff.o -MD -MP -MF ".deps/cuffdiff.Tpo" -c -o cuffdiff.o cuffdiff.cpp; \
    303 :info:build     then mv -f ".deps/cuffdiff.Tpo" ".deps/cuffdiff.Po"; else rm -f ".deps/cuffdiff.Tpo"; exit 1; fi
    304 :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I..  -I../src  -I/opt/local/include -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG  -pthread -I/opt/local/include -I/opt/local/include -MT gtf_to_sam.o -MD -MP -MF ".deps/gtf_to_sam.Tpo" -c -o gtf_to_sam.o gtf_to_sam.cpp; \
    305 :info:build     then mv -f ".deps/gtf_to_sam.Tpo" ".deps/gtf_to_sam.Po"; else rm -f ".deps/gtf_to_sam.Tpo"; exit 1; fi
    306 :info:build In file included from GFaSeqGet.cpp:1:
    307 :info:build In file included from ./GFaSeqGet.h:4:
    308 :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable]
    309 :info:build  int result=-1;
    310 :info:build      ^
    311 :info:build In file included from gtf_tracking.cpp:11:
    312 :info:build In file included from ./gtf_tracking.h:12:
    313 :info:build In file included from ./gff.h:7:
    314 :info:build In file included from ./GFaSeqGet.h:4:
    315 :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable]
    316 :info:build  int result=-1;
    317 :info:build      ^
    318 :info:build In file included from gff.cpp:1:
    319 :info:build In file included from ./gff.h:7:
    320 :info:build In file included from ./GFaSeqGet.h:4:
    321 :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable]
    322 :info:build  int result=-1;
    323 :info:build      ^
    324 :info:build In file included from cuffcompare.cpp:10:
    325 :info:build In file included from ./gtf_tracking.h:12:
    326 :info:build In file included from ./gff.h:7:
    327 :info:build In file included from ./GFaSeqGet.h:4:
    328 :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable]
    329 :info:build  int result=-1;
    330 :info:build      ^
    331 :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert'
    332 :info:build    idxInsert(result, *item);
    333 :info:build    ^
    334 :info:build    this->
    335 :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GffCDSeg>::Add' requested here
    336 :info:build     int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it
    337 :info:build                                 ^
    338 :info:build gff.cpp:1386:13: note: in instantiation of member function 'GArray<GffCDSeg>::Add' requested here
    339 :info:build         cds.Add(cdseg);
    340 :info:build             ^
    341 :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class
    342 :info:build     void idxInsert(int idx, OBJ& item);
    343 :info:build          ^
    344 :info:build GFaSeqGet.cpp:62:17: error: use of undeclared identifier 'fseeko'; did you mean 'fseek'?
    345 :info:build  if (fofs!=0) { fseeko(fh,fofs,SEEK_SET); } //e.g. for offsets provided by cdbyank
    346 :info:build                 ^~~~~~
    347 :info:build                 fseek
    348 :info:build /usr/include/stdio.h:259:6: note: 'fseek' declared here
    349 :info:build int      fseek(FILE *, long, int);
    350 :info:build          ^
    351 :info:build GFaSeqGet.cpp:128:2: error: use of undeclared identifier 'fseeko'; did you mean 'fseek'?
    352 :info:build  fseeko(fh,fseqstart,SEEK_SET);
    353 :info:build  ^~~~~~
    354 :info:build  fseek
    355 :info:build /usr/include/stdio.h:259:6: note: 'fseek' declared here
    356 :info:build int      fseek(FILE *, long, int);
    357 :info:build          ^
    358 :info:build GFaSeqGet.cpp:261:3: error: use of undeclared identifier 'fseeko'; did you mean 'fseek'?
    359 :info:build   fseeko(fh, fstart, SEEK_SET);
    360 :info:build   ^~~~~~
    361 :info:build   fseek
    362 :info:build /usr/include/stdio.h:259:6: note: 'fseek' declared here
    363 :info:build int      fseek(FILE *, long, int);
    364 :info:build          ^
    365 :info:build GFaSeqGet.cpp:280:5: error: use of undeclared identifier 'fseeko'; did you mean 'fseek'?
    366 :info:build     fseeko(fh, lendlen, SEEK_CUR);
    367 :info:build     ^~~~~~
    368 :info:build     fseek
    369 :info:build /usr/include/stdio.h:259:6: note: 'fseek' declared here
    370 :info:build int      fseek(FILE *, long, int);
    371 :info:build          ^
    372 :info:build GFaSeqGet.cpp:300:5: error: use of undeclared identifier 'fseeko'; did you mean 'fseek'?
    373 :info:build     fseeko(fh, lendlen, SEEK_CUR);
    374 :info:build     ^~~~~~
    375 :info:build     fseek
    376 :info:build /usr/include/stdio.h:259:6: note: 'fseek' declared here
    377 :info:build int      fseek(FILE *, long, int);
    378 :info:build          ^
    379 :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert'
    380 :info:build    idxInsert(result, *item);
    381 :info:build    ^
    382 :info:build    this->
    383 :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    384 :info:build     int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it
    385 :info:build                                 ^
    386 :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    387 :info:build                                 uexons.Add(seg);
    388 :info:build                                        ^
    389 :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class
    390 :info:build     void idxInsert(int idx, OBJ& item);
    391 :info:build          ^
    392 :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity'
    393 :info:build     setCapacity(this->fCapacity+list.fCount);
    394 :info:build     ^
    395 :info:build     this->
    396 :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here
    397 :info:build                 qmrnas.Add(loc.mrnas);
    398 :info:build                        ^
    399 :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class
    400 :info:build     void setCapacity(int NewCapacity);
    401 :info:build          ^
    402 :info:build 1 warning and 1 error generated.
    403 :info:build ./GList.hh:537:5: error: use of undeclared identifie1r warning and 5 errors  generated.
    404 :info:build 'setCapacity'
    405 :info:build     setCapacity(this->fCapacity+list.fCount);
    406 :info:build     ^
    407 :info:build     this->
    408 :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    409 :info:build                 qmexons.Add(loc.mexons);
    410 :info:build                         ^
    411 :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class
    412 :info:build     void setCapacity(int NewCapacity);
    413 :info:build          ^
    414 :info:build 1 warning and 3 errors generated.
    415 :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert'
    416 :info:build    idxInsert(result, *item);
    417 :info:build    ^
    418 :info:build    this->
    419 :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    420 :info:build     int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it
    421 :info:build                                 ^
    422 :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    423 :info:build                                 uexons.Add(seg);
    424 :info:build                                        ^
    425 :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class
    426 :info:build     void idxInsert(int idx, OBJ& item);
    427 :info:build          ^
    428 :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity'
    429 :info:build     setCapacity(this->fCapacity+list.fCount);
    430 :info:build     ^
    431 :info:build     this->
    432 :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here
    433 :info:build                 qmrnas.Add(loc.mrnas);
    434 :info:build                        ^
    435 :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class
    436 :info:build     void setCapacity(int NewCapacity);
    437 :info:build          ^
    438 :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity'
    439 :info:build     setCapacity(this->fCapacity+list.fCount);
    440 :info:build     ^
    441 :info:build     this->
    442 :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    443 :info:build                 qmexons.Add(loc.mexons);
    444 :info:build                         ^
    445 :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class
    446 :info:build     void setCapacity(int NewCapacity);
    447 :info:build          ^
    448 :info:build 1 warning and 3 errors generated.
    449 :info:build make[2]: *** [gff.o] Error 1
    450 :info:build make[2]: *** Waiting for unfinished jobs....
    451 :info:build make[2]: *** [gtf_tracking.o] Error 1
    452 :info:build make[2]: *** [GFaSeqGet.o] Error 1
    453 :info:build make[2]: *** [cuffcompare.o] Error 1
    454 :info:build In file included from jensen_shannon.cpp:12:
    455 :info:build In file included from ./jensen_shannon.h:10:
    456 :info:build In file included from /opt/local/include/boost/numeric/ublas/matrix.hpp:16:
    457 :info:build In file included from /opt/local/include/boost/numeric/ublas/vector.hpp:19:
    458 :info:build In file included from /opt/local/include/boost/numeric/ublas/storage.hpp:26:
    459 :info:build /opt/local/include/boost/numeric/ublas/traits.hpp:45:27: warning: unused function 'boost_numeric_ublas_abs' [-Wunused-function]
    460 :info:build   template<> unsigned int boost_numeric_ublas_abs (const unsigned int& t) {
    461 :info:build                           ^
    462 :info:build /opt/local/include/boost/numeric/ublas/traits.hpp:49:28: warning: unused function 'boost_numeric_ublas_abs' [-Wunused-function]
    463 :info:build   template<> unsigned long boost_numeric_ublas_abs (const unsigned long& t) {
    464 :info:build                            ^
    465 :info:build 2 warnings generated.
    466 :info:build In file included from genes.cpp:10:
    467 :info:build In file included from ./genes.h:17:
    468 :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable]
    469 :info:build         foreach(AugmentedCuffOp& op, aug_ops)
    470 :info:build                                  ^
    471 :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH'
    472 :info:build         for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true)
    473 :info:build              ^
    474 :info:build In file included from genes.cpp:10:
    475 :info:build In file included from ./genes.h:18:
    476 :info:build In file included from ./abundances.h:22:
    477 :info:build In file included from ./bundles.h:21:
    478 :info:build In file included from ./gtf_tracking.h:12:
    479 :info:build In file included from ./gff.h:7:
    480 :info:build In file included from ./GFaSeqGet.h:4:
    481 :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable]
    482 :info:build  int result=-1;
    483 :info:build      ^
    484 :info:build In file included from scaffold_graph.cpp:12:
    485 :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable]
    486 :info:build         foreach(AugmentedCuffOp& op, aug_ops)
    487 :info:build                                  ^
    488 :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH'
    489 :info:build         for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true)
    490 :info:build              ^
    491 :info:build In file included from differential.cpp:14:
    492 :info:build In file included from ./abundances.h:21:
    493 :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable]
    494 :info:build         foreach(AugmentedCuffOp& op, aug_ops)
    495 :info:build                                  ^
    496 :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH'
    497 :info:build         for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true)
    498 :info:build              ^
    499 :info:build In file included from biascorrection.cpp:10:
    500 :info:build In file included from ./biascorrection.h:14:
    501 :info:build In file included from ./bundles.h:20:
    502 :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable]
    503 :info:build         foreach(AugmentedCuffOp& op, aug_ops)
    504 :info:build                                  ^
    505 :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH'
    506 :info:build         for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true)
    507 :info:build              ^
    508 :info:build In file included from differential.cpp:14:
    509 :info:build In file included from ./abundances.h:22:
    510 :info:build In file included from ./bundles.h:21:
    511 :info:build In file included from ./gtf_tracking.h:12:
    512 :info:build In file included from ./gff.h:7:
    513 :info:build In file included from ./GFaSeqGet.h:4:
    514 :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable]
    515 :info:build  int result=-1;
    516 :info:build      ^
    517 :info:build In file included from abundances.cpp:11:
    518 :info:build In file included from ./abundances.h:21:
    519 :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable]
    520 :info:build         foreach(AugmentedCuffOp& op, aug_ops)
    521 :info:build                                  ^
    522 :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH'
    523 :info:build         for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true)
    524 :info:build              ^
    525 :info:build In file included from biascorrection.cpp:10:
    526 :info:build In file included from ./biascorrection.h:14:
    527 :info:build In file included from ./bundles.h:21:
    528 :info:build In file included from ./gtf_tracking.h:12:
    529 :info:build In file included from ./gff.h:7:
    530 :info:build In file included from ./GFaSeqGet.h:4:
    531 :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable]
    532 :info:build  int result=-1;
    533 :info:build      ^
    534 :info:build In file included from matching_merge.cpp:10:
    535 :info:build In file included from ./matching_merge.h:20:
    536 :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable]
    537 :info:build         foreach(AugmentedCuffOp& op, aug_ops)
    538 :info:build                                  ^
    539 :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH'
    540 :info:build         for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true)
    541 :info:build              ^
    542 :info:build In file included from abundances.cpp:11:
    543 :info:build In file included from ./abundances.h:22:
    544 :info:build In file included from ./bundles.h:21:
    545 :info:build In file included from ./gtf_tracking.h:12:
    546 :info:build In file included from ./gff.h:7:
    547 :info:build In file included from ./GFaSeqGet.h:4:
    548 :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable]
    549 :info:build  int result=-1;
    550 :info:build      ^
    551 :info:build In file included from scaffolds.cpp:13:
    552 :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable]
    553 :info:build         foreach(AugmentedCuffOp& op, aug_ops)
    554 :info:build                                  ^
    555 :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH'
    556 :info:build         for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true)
    557 :info:build              ^
    558 :info:build scaffolds.cpp:1144:47: warning: '&&' within '||' [-Wlogical-op-parentheses]
    559 :info:build                 if (hit.left_alignment()->antisense_align() && strand() != CUFF_REV
    560 :info:build                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
    561 :info:build scaffolds.cpp:1144:47: note: place parentheses around the '&&' expression to silence this warning
    562 :info:build                 if (hit.left_alignment()->antisense_align() && strand() != CUFF_REV
    563 :info:build                                                             ^
    564 :info:build                     (                                                              )
    565 :info:build scaffolds.cpp:1145:50: warning: '&&' within '||' [-Wlogical-op-parentheses]
    566 :info:build                         || !(hit.left_alignment()->antisense_align()) && strand() == CUFF_REV)
    567 :info:build                         ~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
    568 :info:build scaffolds.cpp:1145:50: note: place parentheses around the '&&' expression to silence this warning
    569 :info:build                         || !(hit.left_alignment()->antisense_align()) && strand() == CUFF_REV)
    570 :info:build                                                                       ^
    571 :info:build                            (                                                                 )
    572 :info:build In file included from cuffdiff.cpp:27:
    573 :info:build In file included from ./bundles.h:20:
    574 :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable]
    575 :info:build         foreach(AugmentedCuffOp& op, aug_ops)
    576 :info:build                                  ^
    577 :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH'
    578 :info:build         for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true)
    579 :info:build              ^
    580 :info:build In file included from filters.cpp:10:
    581 :info:build In file included from ./filters.h:17:
    582 :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable]
    583 :info:build         foreach(AugmentedCuffOp& op, aug_ops)
    584 :info:build                                  ^
    585 :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH'
    586 :info:build         for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true)
    587 :info:build              ^
    588 :info:build In file included from cuffdiff.cpp:27:
    589 :info:build In file included from ./bundles.h:21:
    590 :info:build In file included from ./gtf_tracking.h:12:
    591 :info:build In file included from ./gff.h:7:
    592 :info:build In file included from ./GFaSeqGet.h:4:
    593 :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable]
    594 :info:build  int result=-1;
    595 :info:build      ^
    596 :info:build In file included from gtf_to_sam.cpp:24:
    597 :info:build In file included from ./bundles.h:20:
    598 :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable]
    599 :info:build         foreach(AugmentedCuffOp& op, aug_ops)
    600 :info:build                                  ^
    601 :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH'
    602 :info:build         for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true)
    603 :info:build              ^
    604 :info:build In file included from bundles.cpp:16:
    605 :info:build In file included from ./bundles.h:20:
    606 :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable]
    607 :info:build         foreach(AugmentedCuffOp& op, aug_ops)
    608 :info:build                                  ^
    609 :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH'
    610 :info:build         for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true)
    611 :info:build              ^
    612 :info:build In file included from gtf_to_sam.cpp:24:
    613 :info:build In file included from ./bundles.h:21:
    614 :info:build In file included from ./gtf_tracking.h:12:
    615 :info:build In file included from ./gff.h:7:
    616 :info:build In file included from ./GFaSeqGet.h:4:
    617 :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable]
    618 :info:build  int result=-1;
    619 :info:build      ^
    620 :info:build In file included from bundles.cpp:16:
    621 :info:build In file included from ./bundles.h:21:
    622 :info:build In file included from ./gtf_tracking.h:12:
    623 :info:build In file included from ./gff.h:7:
    624 :info:build In file included from ./GFaSeqGet.h:4:
    625 :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable]
    626 :info:build  int result=-1;
    627 :info:build      ^
    628 :info:build In file included from filters.cpp:10:
    629 :info:build In file included from ./filters.h:18:
    630 :info:build In file included from ./genes.h:18:
    631 :info:build In file included from ./abundances.h:22:
    632 :info:build In file included from ./bundles.h:21:
    633 :info:build In file included from ./gtf_tracking.h:12:
    634 :info:build In file included from ./gff.h:7:
    635 :info:build In file included from ./GFaSeqGet.h:4:
    636 :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable]
    637 :info:build  int result=-1;
    638 :info:build      ^
    639 :info:build In file included from graph_optimize.cpp:13:
    640 :info:build In file included from ./graph_optimize.h:17:
    641 :info:build In file included from ./bundles.h:20:
    642 :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable]
    643 :info:build         foreach(AugmentedCuffOp& op, aug_ops)
    644 :info:build                                  ^
    645 :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH'
    646 :info:build         for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true)
    647 :info:build              ^
    648 :info:build bundles.cpp:1172:33: warning: expression result unused [-Wunused-value]
    649 :info:build                     itr->second.fwd_strand_frags;
    650 :info:build                     ~~~~~~~~~~~ ^~~~~~~~~~~~~~~~
    651 :info:build In file included from graph_optimize.cpp:13:
    652 :info:build In file included from ./graph_optimize.h:17:
    653 :info:build In file included from ./bundles.h:21:
    654 :info:build In file included from ./gtf_tracking.h:12:
    655 :info:build In file included from ./gff.h:7:
    656 :info:build In file included from ./GFaSeqGet.h:4:
    657 :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable]
    658 :info:build  int result=-1;
    659 :info:build      ^
    660 :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert'
    661 :info:build    idxInsert(result, *item);
    662 :info:build    ^
    663 :info:build    this->
    664 :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    665 :info:build     int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it
    666 :info:build                                 ^
    667 :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    668 :info:build                                 uexons.Add(seg);
    669 :info:build                                        ^
    670 :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class
    671 :info:build     void idxInsert(int idx, OBJ& item);
    672 :info:build          ^
    673 :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity'
    674 :info:build     setCapacity(this->fCapacity+list.fCount);
    675 :info:build     ^
    676 :info:build     this->
    677 :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here
    678 :info:build                 qmrnas.Add(loc.mrnas);
    679 :info:build                        ^
    680 :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class
    681 :info:build     void setCapacity(int NewCapacity);
    682 :info:build          ^
    683 :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity'
    684 :info:build     setCapacity(this->fCapacity+list.fCount);
    685 :info:build     ^
    686 :info:build     this->
    687 :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    688 :info:build                 qmexons.Add(loc.mexons);
    689 :info:build                         ^
    690 :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class
    691 :info:build     void setCapacity(int NewCapacity);
    692 :info:build          ^
    693 :info:build In file included from assemble.cpp:48:
    694 :info:build In file included from ./assemble.h:26:
    695 :info:build In file included from ./bundles.h:20:
    696 :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable]
    697 :info:build         foreach(AugmentedCuffOp& op, aug_ops)
    698 :info:build                                  ^
    699 :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH'
    700 :info:build         for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true)
    701 :info:build              ^
    702 :info:build In file included from clustering.cpp:10:
    703 :info:build In file included from ./clustering.h:38:
    704 :info:build In file included from ./abundances.h:21:
    705 :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable]
    706 :info:build         foreach(AugmentedCuffOp& op, aug_ops)
    707 :info:build                                  ^
    708 :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH'
    709 :info:build         for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true)
    710 :info:build              ^
    711 :info:build In file included from assemble.cpp:48:
    712 :info:build In file included from ./assemble.h:26:
    713 :info:build In file included from ./bundles.h:21:
    714 :info:build In file included from ./gtf_tracking.h:12:
    715 :info:build In file included from ./gff.h:7:
    716 :info:build In file included from ./GFaSeqGet.h:4:
    717 :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable]
    718 :info:build  int result=-1;
    719 :info:build      ^
    720 :info:build In file included from clustering.cpp:10:
    721 :info:build In file included from ./clustering.h:38:
    722 :info:build In file included from ./abundances.h:22:
    723 :info:build In file included from ./bundles.h:21:
    724 :info:build In file included from ./gtf_tracking.h:12:
    725 :info:build In file included from ./gff.h:7:
    726 :info:build In file included from ./GFaSeqGet.h:4:
    727 :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable]
    728 :info:build  int result=-1;
    729 :info:build      ^
    730 :info:build 2 warnings and 3 errors generated.
    731 :info:build make[2]: *** [genes.o] Error 1
    732 :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert'
    733 :info:build    idxInsert(result, *item);
    734 :info:build    ^
    735 :info:build    this->
    736 :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    737 :info:build     int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it
    738 :info:build                                 ^
    739 :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    740 :info:build                                 uexons.Add(seg);
    741 :info:build                                        ^
    742 :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class
    743 :info:build     void idxInsert(int idx, OBJ& item);
    744 :info:build          ^
    745 :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity'
    746 :info:build     setCapacity(this->fCapacity+list.fCount);
    747 :info:build     ^
    748 :info:build     this->
    749 :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here
    750 :info:build                 qmrnas.Add(loc.mrnas);
    751 :info:build                        ^
    752 :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class
    753 :info:build     void setCapacity(int NewCapacity);
    754 :info:build          ^
    755 :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity'
    756 :info:build     setCapacity(this->fCapacity+list.fCount);
    757 :info:build     ^
    758 :info:build     this->
    759 :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    760 :info:build                 qmexons.Add(loc.mexons);
    761 :info:build                         ^
    762 :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class
    763 :info:build     void setCapacity(int NewCapacity);
    764 :info:build          ^
    765 :info:build In file included from differential.cpp:15:
    766 :info:build In file included from ./differential.h:23:
    767 :info:build In file included from /opt/local/include/boost/graph/adjacency_list.hpp:45:
    768 :info:build In file included from /opt/local/include/boost/graph/named_graph.hpp:17:
    769 :info:build /opt/local/include/boost/multi_index/hashed_index.hpp:1254:10: error: no member named 'BOOST_FOREACH' in namespace 'boost'
    770 :info:build   boost::foreach::tag)
    771 :info:build   ~~~~~~~^
    772 :info:build ./common.h:26:25: note: expanded from macro 'foreach'
    773 :info:build #define foreach         BOOST_FOREACH
    774 :info:build                         ^
    775 :info:build In file included from scaffold_graph.cpp:14:
    776 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    777 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_weight_map' [-Wunused-variable]
    778 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    779 :info:build       ^
    780 :info:build /opt/local/include/boost/graph/named_function_params.hpp:63:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    781 :info:build     BOOST_BGL_ONE_PARAM_CREF(weight_map, edge_weight) \
    782 :info:build     ^
    783 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    784 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    785 :info:build                                             ^
    786 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    787 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    788 :info:build         ^
    789 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    790 :info:build <scratch space>:174:1: note: expanded from macro '_'
    791 :info:build _weight_map
    792 :info:build ^
    793 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    794 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    795 :info:build                                                     ^
    796 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    797 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    798 :info:build                                                ^
    799 :info:build In file included from scaffold_graph.cpp:14:
    800 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    801 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_weight_map2' [-Wunused-variable]
    802 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    803 :info:build       ^
    804 :info:build /opt/local/include/boost/graph/named_function_params.hpp:64:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    805 :info:build     BOOST_BGL_ONE_PARAM_CREF(weight_map2, edge_weight2) \
    806 :info:build     ^
    807 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    808 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    809 :info:build                                             ^
    810 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    811 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    812 :info:build         ^
    813 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    814 :info:build <scratch space>:178:1: note: expanded from macro '_'
    815 :info:build _weight_map2
    816 :info:build ^
    817 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    818 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    819 :info:build                                                     ^
    820 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    821 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    822 :info:build                                                ^
    823 :info:build In file included from scaffold_graph.cpp:14:
    824 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    825 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_distance_map' [-Wunused-variable]
    826 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    827 :info:build       ^
    828 :info:build /opt/local/include/boost/graph/named_function_params.hpp:65:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    829 :info:build     BOOST_BGL_ONE_PARAM_CREF(distance_map, vertex_distance) \
    830 :info:build     ^
    831 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    832 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    833 :info:build                                             ^
    834 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    835 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    836 :info:build         ^
    837 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    838 :info:build <scratch space>:182:1: note: expanded from macro '_'
    839 :info:build _distance_map
    840 :info:build ^
    841 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    842 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    843 :info:build                                                     ^
    844 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    845 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    846 :info:build                                                ^
    847 :info:build In file included from scaffold_graph.cpp:14:
    848 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    849 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_predecessor_map' [-Wunused-variable]
    850 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    851 :info:build       ^
    852 :info:build /opt/local/include/boost/graph/named_function_params.hpp:66:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    853 :info:build     BOOST_BGL_ONE_PARAM_CREF(predecessor_map, vertex_predecessor) \
    854 :info:build     ^
    855 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    856 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    857 :info:build                                             ^
    858 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    859 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    860 :info:build         ^
    861 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    862 :info:build <scratch space>:186:1: note: expanded from macro '_'
    863 :info:build _predecessor_map
    864 :info:build ^
    865 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    866 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    867 :info:build                                                     ^
    868 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    869 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    870 :info:build                                                ^
    871 :info:build In file included from scaffold_graph.cpp:14:
    872 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    873 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_rank_map' [-Wunused-variable]
    874 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    875 :info:build       ^
    876 :info:build /opt/local/include/boost/graph/named_function_params.hpp:67:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    877 :info:build     BOOST_BGL_ONE_PARAM_CREF(rank_map, vertex_rank) \
    878 :info:build     ^
    879 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    880 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    881 :info:build                                             ^
    882 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    883 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    884 :info:build         ^
    885 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    886 :info:build <scratch space>:190:1: note: expanded from macro '_'
    887 :info:build _rank_map
    888 :info:build ^
    889 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    890 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    891 :info:build                                                     ^
    892 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    893 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    894 :info:build                                                ^
    895 :info:build In file included from scaffold_graph.cpp:14:
    896 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    897 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_root_map' [-Wunused-variable]
    898 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    899 :info:build       ^
    900 :info:build /opt/local/include/boost/graph/named_function_params.hpp:68:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    901 :info:build     BOOST_BGL_ONE_PARAM_CREF(root_map, vertex_root) \
    902 :info:build     ^
    903 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    904 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    905 :info:build                                             ^
    906 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    907 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    908 :info:build         ^
    909 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    910 :info:build <scratch space>:194:1: note: expanded from macro '_'
    911 :info:build _root_map
    912 :info:build ^
    913 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    914 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    915 :info:build                                                     ^
    916 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    917 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    918 :info:build                                                ^
    919 :info:build In file included from scaffold_graph.cpp:14:
    920 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    921 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_edge_centrality_map' [-Wunused-variable]
    922 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    923 :info:build       ^
    924 :info:build /opt/local/include/boost/graph/named_function_params.hpp:70:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    925 :info:build     BOOST_BGL_ONE_PARAM_CREF(edge_centrality_map, edge_centrality) \
    926 :info:build     ^
    927 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    928 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    929 :info:build                                             ^
    930 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    931 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    932 :info:build         ^
    933 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    934 :info:build <scratch space>:202:1: note: expanded from macro '_'
    935 :info:build _edge_centrality_map
    936 :info:build ^
    937 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    938 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    939 :info:build                                                     ^
    940 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    941 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    942 :info:build                                                ^
    943 :info:build In file included from scaffold_graph.cpp:14:
    944 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    945 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_centrality_map' [-Wunused-variable]
    946 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    947 :info:build       ^
    948 :info:build /opt/local/include/boost/graph/named_function_params.hpp:71:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    949 :info:build     BOOST_BGL_ONE_PARAM_CREF(centrality_map, vertex_centrality) \
    950 :info:build     ^
    951 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    952 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    953 :info:build                                             ^
    954 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    955 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    956 :info:build         ^
    957 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    958 :info:build <scratch space>:206:1: note: expanded from macro '_'
    959 :info:build _centrality_map
    960 :info:build ^
    961 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    962 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    963 :info:build                                                     ^
    964 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    965 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    966 :info:build                                                ^
    967 :info:build In file included from scaffold_graph.cpp:14:
    968 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    969 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_parity_map' [-Wunused-variable]
    970 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    971 :info:build       ^
    972 :info:build /opt/local/include/boost/graph/named_function_params.hpp:72:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    973 :info:build     BOOST_BGL_ONE_PARAM_CREF(parity_map, parity_map) \
    974 :info:build     ^
    975 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    976 :info:build In file included from cufflinks.cpp#define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    977 :info:build                                             ^
    978 :info:build /opt/local/include/boost/parameter/name.hpp:139:9:25:
    979 :info:build In file included from ./clustering.h:19:
    980 :info:build In file included from /opt/local/include/boost/graph/adjacency_list.hpp: note: exp:45:
    981 :info:build In file included from /opt/local/include/boost/graph/named_graph.hpp:17:
    982 :info:build /opt/local/include/boost/multi_index/hashed_index.hpp:1254a:nde10: error: nod fr membomer na macrmed 'o 'BOOBOOSTST__PAFORRAMEACH' ETER_in namespacNAMe 'Eb'
    983 :info:build oost'
    984 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    985 :info:build         ^
    986 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    987 :info:build <scratch space>:210:1: note: expanded from macro '_'
    988 :info:build _parity_map
    989 :info:build ^
    990 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    991 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    992 :info:build                                                     ^
    993 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    994 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    995 :info:build                                                ^
    996 :info:build   boost::foreach::tag)
    997 :info:build   ~~~~~~~^
    998 :info:build In file included from scaffold_graph.cpp./common.h:26::14:
    999 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1000 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:257: warning: unus:ed var note: iabexple anded'_col for_rommap macro '' [foreach'-W
    1001 :info:build unused-variable]
    1002 :info:build #define foreach         BOOST_FOREACH
    1003 :info:build                         ^
    1004 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1005 :info:build       ^
    1006 :info:build /opt/local/include/boost/graph/named_function_params.hpp:73:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1007 :info:build     BOOST_BGL_ONE_PARAM_CREF(color_map, vertex_color) \
    1008 :info:build     ^
    1009 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1010 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1011 :info:build                                             ^
    1012 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1013 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1014 :info:build         ^
    1015 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1016 :info:build <scratch space>:4:1: note: expanded from macro '_'
    1017 :info:build _color_map
    1018 :info:build ^
    1019 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1020 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1021 :info:build                                                     ^
    1022 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1023 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1024 :info:build                                                ^
    1025 :info:build In file included from scaffold_graph.cpp:14:
    1026 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1027 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_edge_color_map' [-Wunused-variable]
    1028 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1029 :info:build       ^
    1030 :info:build /opt/local/include/boost/graph/named_function_params.hpp:74:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1031 :info:build     BOOST_BGL_ONE_PARAM_CREF(edge_color_map, edge_color) \
    1032 :info:build     ^
    1033 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1034 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1035 :info:build                                             ^
    1036 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1037 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1038 :info:build         ^
    1039 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1040 :info:build <scratch space>:8:1: note: expanded from macro '_'
    1041 :info:build _edge_color_map
    1042 :info:build ^
    1043 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1044 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1045 :info:build                                                     ^
    1046 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1047 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1048 :info:build                                                ^
    1049 :info:build In file included from scaffold_graph.cpp:14:
    1050 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1051 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_capacity_map' [-Wunused-variable]
    1052 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1053 :info:build       ^
    1054 :info:build /opt/local/include/boost/graph/named_function_params.hpp:75:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1055 :info:build     BOOST_BGL_ONE_PARAM_CREF(capacity_map, edge_capacity) \
    1056 :info:build     ^
    1057 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1058 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1059 :info:build                                             ^
    1060 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1061 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1062 :info:build         ^
    1063 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1064 :info:build <scratch space>:12:1: note: expanded from macro '_'
    1065 :info:build _capacity_map
    1066 :info:build ^
    1067 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1068 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1069 :info:build                                                     ^
    1070 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1071 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1072 :info:build                                                ^
    1073 :info:build In file included from scaffold_graph.cpp:14:
    1074 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1075 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_residual_capacity_map' [-Wunused-variable]
    1076 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1077 :info:build       ^
    1078 :info:build /opt/local/include/boost/graph/named_function_params.hpp:76:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1079 :info:build     BOOST_BGL_ONE_PARAM_CREF(residual_capacity_map, edge_residual_capacity) \
    1080 :info:build     ^
    1081 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1082 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1083 :info:build                                             ^
    1084 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1085 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1086 :info:build         ^
    1087 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1088 :info:build <scratch space>:16:1: note: expanded from macro '_'
    1089 :info:build _residual_capacity_map
    1090 :info:build ^
    1091 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1092 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1093 :info:build                                                     ^
    1094 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1095 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1096 :info:build                                                ^
    1097 :info:build In file included from scaffold_graph.cpp:14:
    1098 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1099 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_reverse_edge_map' [-Wunused-variable]
    1100 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1101 :info:build       ^
    1102 :info:build /opt/local/include/boost/graph/named_function_params.hpp:77:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1103 :info:build     BOOST_BGL_ONE_PARAM_CREF(reverse_edge_map, edge_reverse) \
    1104 :info:build     ^
    1105 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1106 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1107 :info:build                                             ^
    1108 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1109 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1110 :info:build         ^
    1111 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1112 :info:build <scratch space>:20:1: note: expanded from macro '_'
    1113 :info:build _reverse_edge_map
    1114 :info:build ^
    1115 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1116 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1117 :info:build                                                     ^
    1118 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1119 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1120 :info:build                                                ^
    1121 :info:build In file included from scaffold_graph.cpp:14:
    1122 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1123 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_discover_time_map' [-Wunused-variable]
    1124 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1125 :info:build       ^
    1126 :info:build /opt/local/include/boost/graph/named_function_params.hpp:78:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1127 :info:build     BOOST_BGL_ONE_PARAM_CREF(discover_time_map, vertex_discover_time) \
    1128 :info:build     ^
    1129 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1130 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1131 :info:build                                             ^
    1132 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1133 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1134 :info:build         ^
    1135 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1136 :info:build <scratch space>:24:1: note: expanded from macro '_'
    1137 :info:build _discover_time_map
    1138 :info:build ^
    1139 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1140 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1141 :info:build                                                     ^
    1142 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1143 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1144 :info:build                                                ^
    1145 :info:build In file included from scaffold_graph.cpp:14:
    1146 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1147 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_lowpoint_map' [-Wunused-variable]
    1148 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1149 :info:build       ^
    1150 :info:build /opt/local/include/boost/graph/named_function_params.hpp:79:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1151 :info:build     BOOST_BGL_ONE_PARAM_CREF(lowpoint_map, vertex_lowpoint) \
    1152 :info:build     ^
    1153 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1154 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1155 :info:build                                             ^
    1156 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1157 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1158 :info:build         ^
    1159 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1160 :info:build <scratch space>:28:1: note: expanded from macro '_'
    1161 :info:build _lowpoint_map
    1162 :info:build ^
    1163 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1164 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1165 :info:build                                                     ^
    1166 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1167 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1168 :info:build                                                ^
    1169 :info:build In file included from scaffold_graph.cpp:14:
    1170 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1171 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_vertex_index1_map' [-Wunused-variable]
    1172 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1173 :info:build       ^
    1174 :info:build /opt/local/include/boost/graph/named_function_params.hpp:81:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1175 :info:build     BOOST_BGL_ONE_PARAM_CREF(vertex_index1_map, vertex_index1) \
    1176 :info:build     ^
    1177 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1178 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1179 :info:build                                             ^
    1180 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1181 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1182 :info:build         ^
    1183 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1184 :info:build <scratch space>:36:1: note: expanded from macro '_'
    1185 :info:build _vertex_index1_map
    1186 :info:build ^
    1187 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1188 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1189 :info:build                                                     ^
    1190 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1191 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1192 :info:build                                                ^
    1193 :info:build In file included from scaffold_graph.cpp:14:
    1194 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1195 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_vertex_index2_map' [-Wunused-variable]
    1196 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1197 :info:build       ^
    1198 :info:build /opt/local/include/boost/graph/named_function_params.hpp:82:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1199 :info:build     BOOST_BGL_ONE_PARAM_CREF(vertex_index2_map, vertex_index2) \
    1200 :info:build     ^
    1201 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1202 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1203 :info:build                                             ^
    1204 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1205 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1206 :info:build         ^
    1207 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1208 :info:build <scratch space>:40:1: note: expanded from macro '_'
    1209 :info:build _vertex_index2_map
    1210 :info:build ^
    1211 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1212 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1213 :info:build                                                     ^
    1214 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1215 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1216 :info:build                                                ^
    1217 :info:build In file included from scaffold_graph.cpp:14:
    1218 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1219 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_vertex_assignment_map' [-Wunused-variable]
    1220 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1221 :info:build       ^
    1222 :info:build /opt/local/include/boost/graph/named_function_params.hpp:83:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1223 :info:build     BOOST_BGL_ONE_PARAM_CREF(vertex_assignment_map, vertex_assignment_map) \
    1224 :info:build     ^
    1225 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1226 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1227 :info:build                                             ^
    1228 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1229 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1230 :info:build         ^
    1231 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1232 :info:build <scratch space>:44:1: note: expanded from macro '_'
    1233 :info:build _vertex_assignment_map
    1234 :info:build ^
    1235 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1236 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1237 :info:build                                                     ^
    1238 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1239 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1240 :info:build                                                ^
    1241 :info:build In file included from scaffold_graph.cpp:14:
    1242 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1243 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_distance_compare' [-Wunused-variable]
    1244 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1245 :info:build       ^
    1246 :info:build /opt/local/include/boost/graph/named_function_params.hpp:85:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1247 :info:build     BOOST_BGL_ONE_PARAM_CREF(distance_compare, distance_compare) \
    1248 :info:build     ^
    1249 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1250 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1251 :info:build                                             ^
    1252 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1253 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1254 :info:build         ^
    1255 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1256 :info:build <scratch space>:52:1: note: expanded from macro '_'
    1257 :info:build _distance_compare
    1258 :info:build ^
    1259 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1260 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1261 :info:build                                                     ^
    1262 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1263 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1264 :info:build                                                ^
    1265 :info:build In file included from scaffold_graph.cpp:14:
    1266 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1267 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_distance_combine' [-Wunused-variable]
    1268 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1269 :info:build       ^
    1270 :info:build /opt/local/include/boost/graph/named_function_params.hpp:86:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1271 :info:build     BOOST_BGL_ONE_PARAM_CREF(distance_combine, distance_combine) \
    1272 :info:build     ^
    1273 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1274 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1275 :info:build                                             ^
    1276 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1277 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1278 :info:build         ^
    1279 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1280 :info:build <scratch space>:56:1: note: expanded from macro '_'
    1281 :info:build _distance_combine
    1282 :info:build ^
    1283 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1284 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1285 :info:build                                                     ^
    1286 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1287 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1288 :info:build                                                ^
    1289 :info:build In file included from scaffold_graph.cpp:14:
    1290 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1291 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_distance_inf' [-Wunused-variable]
    1292 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1293 :info:build       ^
    1294 :info:build /opt/local/include/boost/graph/named_function_params.hpp:87:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1295 :info:build     BOOST_BGL_ONE_PARAM_CREF(distance_inf, distance_inf) \
    1296 :info:build     ^
    1297 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1298 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1299 :info:build                                             ^
    1300 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1301 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1302 :info:build         ^
    1303 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1304 :info:build <scratch space>:60:1: note: expanded from macro '_'
    1305 :info:build _distance_inf
    1306 :info:build ^
    1307 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1308 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1309 :info:build                                                     ^
    1310 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1311 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1312 :info:build                                                ^
    1313 :info:build In file included from scaffold_graph.cpp:14:
    1314 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1315 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_distance_zero' [-Wunused-variable]
    1316 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1317 :info:build       ^
    1318 :info:build /opt/local/include/boost/graph/named_function_params.hpp:88:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1319 :info:build     BOOST_BGL_ONE_PARAM_CREF(distance_zero, distance_zero) \
    1320 :info:build     ^
    1321 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1322 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1323 :info:build                                             ^
    1324 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1325 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1326 :info:build         ^
    1327 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1328 :info:build <scratch space>:64:1: note: expanded from macro '_'
    1329 :info:build _distance_zero
    1330 :info:build ^
    1331 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1332 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1333 :info:build                                                     ^
    1334 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1335 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1336 :info:build                                                ^
    1337 :info:build In file included from scaffold_graph.cpp:14:
    1338 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1339 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_edge_copy' [-Wunused-variable]
    1340 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1341 :info:build       ^
    1342 :info:build /opt/local/include/boost/graph/named_function_params.hpp:89:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1343 :info:build     BOOST_BGL_ONE_PARAM_CREF(edge_copy, edge_copy) \
    1344 :info:build     ^
    1345 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1346 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1347 :info:build                                             ^
    1348 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1349 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1350 :info:build         ^
    1351 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1352 :info:build <scratch space>:68:1: note: expanded from macro '_'
    1353 :info:build _edge_copy
    1354 :info:build ^
    1355 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1356 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1357 :info:build                                                     ^
    1358 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1359 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1360 :info:build                                                ^
    1361 :info:build In file included from scaffold_graph.cpp:14:
    1362 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1363 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_vertex_copy' [-Wunused-variable]
    1364 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1365 :info:build       ^
    1366 :info:build /opt/local/include/boost/graph/named_function_params.hpp:90:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1367 :info:build     BOOST_BGL_ONE_PARAM_CREF(vertex_copy, vertex_copy) \
    1368 :info:build     ^
    1369 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1370 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1371 :info:build                                             ^
    1372 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1373 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1374 :info:build         ^
    1375 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1376 :info:build <scratch space>:72:1: note: expanded from macro '_'
    1377 :info:build _vertex_copy
    1378 :info:build ^
    1379 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1380 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1381 :info:build                                                     ^
    1382 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1383 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1384 :info:build                                                ^
    1385 :info:build In file included from scaffold_graph.cpp:14:
    1386 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1387 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_buffer' [-Wunused-variable]
    1388 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1389 :info:build       ^
    1390 :info:build /opt/local/include/boost/graph/named_function_params.hpp:91:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1391 :info:build     BOOST_BGL_ONE_PARAM_REF(buffer, buffer_param) \
    1392 :info:build     ^
    1393 :info:build /opt/local/include/boost/graph/named_function_params.hpp:333:44: note: expanded from macro 'BOOST_BGL_ONE_PARAM_REF'
    1394 :info:build #define BOOST_BGL_ONE_PARAM_REF(name, key) BOOST_PARAMETER_NAME(name)
    1395 :info:build                                            ^
    1396 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1397 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1398 :info:build         ^
    1399 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1400 :info:build <scratch space>:76:1: note: expanded from macro '_'
    1401 :info:build _buffer
    1402 :info:build ^
    1403 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1404 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1405 :info:build                                                     ^
    1406 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1407 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1408 :info:build                                                ^
    1409 :info:build In file included from scaffold_graph.cpp:14:
    1410 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1411 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_orig_to_copy' [-Wunused-variable]
    1412 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1413 :info:build       ^
    1414 :info:build /opt/local/include/boost/graph/named_function_params.hpp:92:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1415 :info:build     BOOST_BGL_ONE_PARAM_CREF(orig_to_copy, orig_to_copy) \
    1416 :info:build     ^
    1417 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1418 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1419 :info:build                                             ^
    1420 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1421 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1422 :info:build         ^
    1423 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1424 :info:build <scratch space>:80:1: note: expanded from macro '_'
    1425 :info:build _orig_to_copy
    1426 :info:build ^
    1427 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1428 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1429 :info:build                                                     ^
    1430 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1431 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1432 :info:build                                                ^
    1433 :info:build In file included from scaffold_graph.cpp:14:
    1434 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1435 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_isomorphism_map' [-Wunused-variable]
    1436 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1437 :info:build       ^
    1438 :info:build /opt/local/include/boost/graph/named_function_params.hpp:93:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1439 :info:build     BOOST_BGL_ONE_PARAM_CREF(isomorphism_map, vertex_isomorphism) \
    1440 :info:build     ^
    1441 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1442 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1443 :info:build                                             ^
    1444 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1445 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1446 :info:build         ^
    1447 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1448 :info:build <scratch space>:84:1: note: expanded from macro '_'
    1449 :info:build _isomorphism_map
    1450 :info:build ^
    1451 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1452 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1453 :info:build                                                     ^
    1454 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1455 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1456 :info:build                                                ^
    1457 :info:build In file included from scaffold_graph.cpp:14:
    1458 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1459 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_vertex_invariant' [-Wunused-variable]
    1460 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1461 :info:build       ^
    1462 :info:build /opt/local/include/boost/graph/named_function_params.hpp:94:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1463 :info:build     BOOST_BGL_ONE_PARAM_CREF(vertex_invariant, vertex_invariant) \
    1464 :info:build     ^
    1465 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1466 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1467 :info:build                                             ^
    1468 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1469 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1470 :info:build         ^
    1471 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1472 :info:build <scratch space>:88:1: note: expanded from macro '_'
    1473 :info:build _vertex_invariant
    1474 :info:build ^
    1475 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1476 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1477 :info:build                                                     ^
    1478 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1479 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1480 :info:build                                                ^
    1481 :info:build In file included from scaffold_graph.cpp:14:
    1482 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1483 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_vertex_invariant1' [-Wunused-variable]
    1484 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1485 :info:build       ^
    1486 :info:build /opt/local/include/boost/graph/named_function_params.hpp:95:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1487 :info:build     BOOST_BGL_ONE_PARAM_CREF(vertex_invariant1, vertex_invariant1) \
    1488 :info:build     ^
    1489 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1490 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1491 :info:build                                             ^
    1492 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1493 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1494 :info:build         ^
    1495 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1496 :info:build <scratch space>:92:1: note: expanded from macro '_'
    1497 :info:build _vertex_invariant1
    1498 :info:build ^
    1499 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1500 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1501 :info:build                                                     ^
    1502 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1503 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1504 :info:build                                                ^
    1505 :info:build In file included from scaffold_graph.cpp:14:
    1506 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1507 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_vertex_invariant2' [-Wunused-variable]
    1508 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1509 :info:build       ^
    1510 :info:build /opt/local/include/boost/graph/named_function_params.hpp:96:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1511 :info:build     BOOST_BGL_ONE_PARAM_CREF(vertex_invariant2, vertex_invariant2) \
    1512 :info:build     ^
    1513 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1514 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1515 :info:build                                             ^
    1516 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1517 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1518 :info:build         ^
    1519 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1520 :info:build <scratch space>:96:1: note: expanded from macro '_'
    1521 :info:build _vertex_invariant2
    1522 :info:build ^
    1523 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1524 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1525 :info:build                                                     ^
    1526 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1527 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1528 :info:build                                                ^
    1529 :info:build In file included from scaffold_graph.cpp:14:
    1530 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1531 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_vertex_max_invariant' [-Wunused-variable]
    1532 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1533 :info:build       ^
    1534 :info:build /opt/local/include/boost/graph/named_function_params.hpp:97:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1535 :info:build     BOOST_BGL_ONE_PARAM_CREF(vertex_max_invariant, vertex_max_invariant) \
    1536 :info:build     ^
    1537 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1538 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1539 :info:build                                             ^
    1540 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1541 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1542 :info:build         ^
    1543 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1544 :info:build <scratch space>:100:1: note: expanded from macro '_'
    1545 :info:build _vertex_max_invariant
    1546 :info:build ^
    1547 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1548 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1549 :info:build                                                     ^
    1550 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1551 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1552 :info:build                                                ^
    1553 :info:build In file included from scaffold_graph.cpp:14:
    1554 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1555 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_polling' [-Wunused-variable]
    1556 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1557 :info:build       ^
    1558 :info:build /opt/local/include/boost/graph/named_function_params.hpp:98:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1559 :info:build     BOOST_BGL_ONE_PARAM_CREF(polling, polling) \
    1560 :info:build     ^
    1561 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1562 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1563 :info:build                                             ^
    1564 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1565 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1566 :info:build         ^
    1567 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1568 :info:build <scratch space>:104:1: note: expanded from macro '_'
    1569 :info:build _polling
    1570 :info:build ^
    1571 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1572 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1573 :info:build                                                     ^
    1574 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1575 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1576 :info:build                                                ^
    1577 :info:build In file included from scaffold_graph.cpp:14:
    1578 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1579 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_lookahead' [-Wunused-variable]
    1580 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1581 :info:build       ^
    1582 :info:build /opt/local/include/boost/graph/named_function_params.hpp:99:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1583 :info:build     BOOST_BGL_ONE_PARAM_CREF(lookahead, lookahead) \
    1584 :info:build     ^
    1585 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1586 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1587 :info:build                                             ^
    1588 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1589 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1590 :info:build         ^
    1591 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1592 :info:build <scratch space>:108:1: note: expanded from macro '_'
    1593 :info:build _lookahead
    1594 :info:build ^
    1595 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1596 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1597 :info:build                                                     ^
    1598 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1599 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1600 :info:build                                                ^
    1601 :info:build In file included from scaffold_graph.cpp:14:
    1602 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1603 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_in_parallel' [-Wunused-variable]
    1604 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1605 :info:build       ^
    1606 :info:build /opt/local/include/boost/graph/named_function_params.hpp:100:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1607 :info:build     BOOST_BGL_ONE_PARAM_CREF(in_parallel, in_parallel) \
    1608 :info:build     ^
    1609 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1610 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1611 :info:build                                             ^
    1612 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1613 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1614 :info:build         ^
    1615 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1616 :info:build <scratch space>:112:1: note: expanded from macro '_'
    1617 :info:build _in_parallel
    1618 :info:build ^
    1619 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1620 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1621 :info:build                                                     ^
    1622 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1623 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1624 :info:build                                                ^
    1625 :info:build In file included from scaffold_graph.cpp:14:
    1626 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1627 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_displacement_map' [-Wunused-variable]
    1628 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1629 :info:build       ^
    1630 :info:build /opt/local/include/boost/graph/named_function_params.hpp:101:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1631 :info:build     BOOST_BGL_ONE_PARAM_CREF(displacement_map, vertex_displacement) \
    1632 :info:build     ^
    1633 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1634 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1635 :info:build                                             ^
    1636 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1637 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1638 :info:build         ^
    1639 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1640 :info:build <scratch space>:116:1: note: expanded from macro '_'
    1641 :info:build _displacement_map
    1642 :info:build ^
    1643 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1644 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1645 :info:build                                                     ^
    1646 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1647 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1648 :info:build                                                ^
    1649 :info:build In file included from scaffold_graph.cpp:14:
    1650 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1651 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_attractive_force' [-Wunused-variable]
    1652 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1653 :info:build       ^
    1654 :info:build /opt/local/include/boost/graph/named_function_params.hpp:102:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1655 :info:build     BOOST_BGL_ONE_PARAM_CREF(attractive_force, attractive_force) \
    1656 :info:build     ^
    1657 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1658 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1659 :info:build                                             ^
    1660 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1661 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1662 :info:build         ^
    1663 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1664 :info:build <scratch space>:120:1: note: expanded from macro '_'
    1665 :info:build _attractive_force
    1666 :info:build ^
    1667 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1668 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1669 :info:build                                                     ^
    1670 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1671 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1672 :info:build                                                ^
    1673 :info:build In file included from scaffold_graph.cpp:14:
    1674 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1675 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_repulsive_force' [-Wunused-variable]
    1676 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1677 :info:build       ^
    1678 :info:build /opt/local/include/boost/graph/named_function_params.hpp:103:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1679 :info:build     BOOST_BGL_ONE_PARAM_CREF(repulsive_force, repulsive_force) \
    1680 :info:build     ^
    1681 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1682 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1683 :info:build                                             ^
    1684 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1685 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1686 :info:build         ^
    1687 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1688 :info:build <scratch space>:124:1: note: expanded from macro '_'
    1689 :info:build _repulsive_force
    1690 :info:build ^
    1691 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1692 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1693 :info:build                                                     ^
    1694 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1695 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1696 :info:build                                                ^
    1697 :info:build In file included from scaffold_graph.cpp:14:
    1698 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1699 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_force_pairs' [-Wunused-variable]
    1700 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1701 :info:build       ^
    1702 :info:build /opt/local/include/boost/graph/named_function_params.hpp:104:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1703 :info:build     BOOST_BGL_ONE_PARAM_CREF(force_pairs, force_pairs) \
    1704 :info:build     ^
    1705 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1706 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1707 :info:build                                             ^
    1708 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1709 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1710 :info:build         ^
    1711 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1712 :info:build <scratch space>:128:1: note: expanded from macro '_'
    1713 :info:build _force_pairs
    1714 :info:build ^
    1715 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1716 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1717 :info:build                                                     ^
    1718 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1719 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1720 :info:build                                                ^
    1721 :info:build In file included from scaffold_graph.cpp:14:
    1722 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1723 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_cooling' [-Wunused-variable]
    1724 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1725 :info:build       ^
    1726 :info:build /opt/local/include/boost/graph/named_function_params.hpp:105:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1727 :info:build     BOOST_BGL_ONE_PARAM_CREF(cooling, cooling) \
    1728 :info:build     ^
    1729 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1730 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1731 :info:build                                             ^
    1732 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1733 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1734 :info:build         ^
    1735 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1736 :info:build <scratch space>:132:1: note: expanded from macro '_'
    1737 :info:build _cooling
    1738 :info:build ^
    1739 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1740 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1741 :info:build                                                     ^
    1742 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1743 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1744 :info:build                                                ^
    1745 :info:build In file included from scaffold_graph.cpp:14:
    1746 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1747 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_iterations' [-Wunused-variable]
    1748 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1749 :info:build       ^
    1750 :info:build /opt/local/include/boost/graph/named_function_params.hpp:106:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1751 :info:build     BOOST_BGL_ONE_PARAM_CREF(iterations, iterations) \
    1752 :info:build     ^
    1753 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1754 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1755 :info:build                                             ^
    1756 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1757 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1758 :info:build         ^
    1759 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1760 :info:build <scratch space>:136:1: note: expanded from macro '_'
    1761 :info:build _iterations
    1762 :info:build ^
    1763 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1764 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1765 :info:build                                                     ^
    1766 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1767 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1768 :info:build                                                ^
    1769 :info:build In file included from scaffold_graph.cpp:14:
    1770 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1771 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_diameter_range' [-Wunused-variable]
    1772 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1773 :info:build       ^
    1774 :info:build /opt/local/include/boost/graph/named_function_params.hpp:107:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1775 :info:build     BOOST_BGL_ONE_PARAM_CREF(diameter_range, diameter_range) \
    1776 :info:build     ^
    1777 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1778 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1779 :info:build                                             ^
    1780 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1781 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1782 :info:build         ^
    1783 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1784 :info:build <scratch space>:140:1: note: expanded from macro '_'
    1785 :info:build _diameter_range
    1786 :info:build ^
    1787 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1788 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1789 :info:build                                                     ^
    1790 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1791 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1792 :info:build                                                ^
    1793 :info:build In file included from scaffold_graph.cpp:14:
    1794 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1795 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_learning_constant_range' [-Wunused-variable]
    1796 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1797 :info:build       ^
    1798 :info:build /opt/local/include/boost/graph/named_function_params.hpp:108:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1799 :info:build     BOOST_BGL_ONE_PARAM_CREF(learning_constant_range, learning_constant_range) \
    1800 :info:build     ^
    1801 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1802 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1803 :info:build                                             ^
    1804 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1805 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1806 :info:build         ^
    1807 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1808 :info:build <scratch space>:144:1: note: expanded from macro '_'
    1809 :info:build _learning_constant_range
    1810 :info:build ^
    1811 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1812 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1813 :info:build                                                     ^
    1814 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1815 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1816 :info:build                                                ^
    1817 :info:build In file included from scaffold_graph.cpp:14:
    1818 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1819 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_vertices_equivalent' [-Wunused-variable]
    1820 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1821 :info:build       ^
    1822 :info:build /opt/local/include/boost/graph/named_function_params.hpp:109:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1823 :info:build     BOOST_BGL_ONE_PARAM_CREF(vertices_equivalent, vertices_equivalent) \
    1824 :info:build     ^
    1825 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1826 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1827 :info:build                                             ^
    1828 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1829 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1830 :info:build         ^
    1831 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1832 :info:build <scratch space>:148:1: note: expanded from macro '_'
    1833 :info:build _vertices_equivalent
    1834 :info:build ^
    1835 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1836 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1837 :info:build                                                     ^
    1838 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1839 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1840 :info:build                                                ^
    1841 :info:build In file included from scaffold_graph.cpp:14:
    1842 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1843 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_edges_equivalent' [-Wunused-variable]
    1844 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1845 :info:build       ^
    1846 :info:build /opt/local/include/boost/graph/named_function_params.hpp:110:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1847 :info:build     BOOST_BGL_ONE_PARAM_CREF(edges_equivalent, edges_equivalent) \
    1848 :info:build     ^
    1849 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1850 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1851 :info:build                                             ^
    1852 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1853 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1854 :info:build         ^
    1855 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1856 :info:build <scratch space>:152:1: note: expanded from macro '_'
    1857 :info:build _edges_equivalent
    1858 :info:build ^
    1859 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1860 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1861 :info:build                                                     ^
    1862 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1863 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1864 :info:build                                                ^
    1865 :info:build In file included from scaffold_graph.cpp:14:
    1866 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1867 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_index_in_heap_map' [-Wunused-variable]
    1868 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1869 :info:build       ^
    1870 :info:build /opt/local/include/boost/graph/named_function_params.hpp:111:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1871 :info:build     BOOST_BGL_ONE_PARAM_CREF(index_in_heap_map, index_in_heap_map) \
    1872 :info:build     ^
    1873 :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF'
    1874 :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name)
    1875 :info:build                                             ^
    1876 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1877 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1878 :info:build         ^
    1879 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1880 :info:build <scratch space>:156:1: note: expanded from macro '_'
    1881 :info:build _index_in_heap_map
    1882 :info:build ^
    1883 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1884 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1885 :info:build                                                     ^
    1886 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1887 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1888 :info:build                                                ^
    1889 :info:build In file included from scaffold_graph.cpp:14:
    1890 :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21:
    1891 :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_max_priority_queue' [-Wunused-variable]
    1892 :info:build       BOOST_BGL_DECLARE_NAMED_PARAMS
    1893 :info:build       ^
    1894 :info:build /opt/local/include/boost/graph/named_function_params.hpp:112:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS'
    1895 :info:build     BOOST_BGL_ONE_PARAM_REF(max_priority_queue, max_priority_queue)
    1896 :info:build     ^
    1897 :info:build /opt/local/include/boost/graph/named_function_params.hpp:333:44: note: expanded from macro 'BOOST_BGL_ONE_PARAM_REF'
    1898 :info:build #define BOOST_BGL_ONE_PARAM_REF(name, key) BOOST_PARAMETER_NAME(name)
    1899 :info:build                                            ^
    1900 :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME'
    1901 :info:build       , BOOST_PARAMETER_SIMPLE_NAME                                 \
    1902 :info:build         ^
    1903 :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all)
    1904 :info:build <scratch space>:160:1: note: expanded from macro '_'
    1905 :info:build _max_priority_queue
    1906 :info:build ^
    1907 :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME'
    1908 :info:build     BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name)
    1909 :info:build                                                     ^
    1910 :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT'
    1911 :info:build        ::boost::parameter::keyword<tag> const& name                 \
    1912 :info:build                                                ^
    1913 :info:build 2 warnings and 3 errors generated.
    1914 :info:build make[2]: *** [gtf_to_sam.o] Error 1
    1915 :info:build In file included from bundles.cpp:16:
    1916 :info:build In file included from ./bundles.h:21:
    1917 :info:build In file included from ./gtf_tracking.h:12:
    1918 :info:build In file included from ./gff.h:7:
    1919 :info:build In file included from ./GFaSeqGet.h:4:
    1920 :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert'
    1921 :info:build    idxInsert(result, *item);
    1922 :info:build    ^
    1923 :info:build    this->
    1924 :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    1925 :info:build     int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it
    1926 :info:build                                 ^
    1927 :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    1928 :info:build                                 uexons.Add(seg);
    1929 :info:build                                        ^
    1930 :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class
    1931 :info:build     void idxInsert(int idx, OBJ& item);
    1932 :info:build          ^
    1933 :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity'
    1934 :info:build     setCapacity(this->fCapacity+list.fCount);
    1935 :info:build     ^
    1936 :info:build     this->
    1937 :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here
    1938 :info:build                 qmrnas.Add(loc.mrnas);
    1939 :info:build                        ^
    1940 :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class
    1941 :info:build     void setCapacity(int NewCapacity);
    1942 :info:build          ^
    1943 :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity'
    1944 :info:build     setCapacity(this->fCapacity+list.fCount);
    1945 :info:build     ^
    1946 :info:build     this->
    1947 :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    1948 :info:build                 qmexons.Add(loc.mexons);
    1949 :info:build                         ^
    1950 :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class
    1951 :info:build     void setCapacity(int NewCapacity);
    1952 :info:build          ^
    1953 :info:build In file included from differential.cpp:15:
    1954 :info:build ./differential.h:176:50: warning: unused variable 's2' [-Wunused-variable]
    1955 :info:build             const vector<shared_ptr<Scaffold> >& s2 =  bundles[i-1]->ref_scaffolds();
    1956 :info:build                                                  ^
    1957 :info:build assemble.cpp:188:21: warning: unused variable 'a_for_b' [-Wunused-variable]
    1958 :info:build                 ReachGraph::ANode a_for_b = b_to_a[b_id];
    1959 :info:build                                   ^
    1960 :info:build assemble.cpp:123:17: warning: unused variable 'hits_for_node' [-Wunused-variable]
    1961 :info:build         HitsForNodeMap hits_for_node = get(vertex_name, dag);
    1962 :info:build                        ^
    1963 :info:build assemble.cpp:262:21: warning: unused variable 'a_for_b' [-Wunused-variable]
    1964 :info:build                 ReachGraph::ANode a_for_b = bp.nodeFromANodeId(a_id_for_b);
    1965 :info:build                                   ^
    1966 :info:build In file included from graph_optimize.cpp:13:
    1967 :info:build In file included from ./graph_optimize.h:18:
    1968 :info:build In file included from ./scaffold_graph.h:14:
    1969 :info:build In file included from /opt/local/include/boost/graph/adjacency_list.hpp:45:
    1970 :info:build In file included from /opt/local/include/boost/graph/named_graph.hpp:17:
    1971 :info:build /opt/local/include/boost/multi_index/hashed_index.hpp:1254:10: error: no member named 'BOOST_FOREACH' in namespace 'boost'
    1972 :info:build   boost::foreach::tag)
    1973 :info:build   ~~~~~~~^
    1974 :info:build ./common.h:26:25: note: expanded from macro 'foreach'
    1975 :info:build #define foreach         BOOST_FOREACH
    1976 :info:build                         ^
    1977 :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert'
    1978 :info:build    idxInsert(result, *item);
    1979 :info:build    ^
    1980 :info:build    this->
    1981 :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    1982 :info:build     int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it
    1983 :info:build                                 ^
    1984 :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    1985 :info:build                                 uexons.Add(seg);
    1986 :info:build                                        ^
    1987 :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class
    1988 :info:build     void idxInsert(int idx, OBJ& item);
    1989 :info:build          ^
    1990 :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity'
    1991 :info:build     setCapacity(this->fCapacity+list.fCount);
    1992 :info:build     ^
    1993 :info:build     this->
    1994 :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here
    1995 :info:build                 qmrnas.Add(loc.mrnas);
    1996 :info:build                        ^
    1997 :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class
    1998 :info:build     void setCapacity(int NewCapacity);
    1999 :info:build          ^
    2000 :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity'
    2001 :info:build     setCapacity(this->fCapacity+list.fCount);
    2002 :info:build     ^
    2003 :info:build     this->
    2004 :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2005 :info:build                 qmexons.Add(loc.mexons);
    2006 :info:build                         ^
    2007 :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class
    2008 :info:build     void setCapacity(int NewCapacity);
    2009 :info:build          ^
    2010 :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert'
    2011 :info:build    idxInsert(result, *item);
    2012 :info:build    ^
    2013 :info:build    this->
    2014 :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2015 :info:build     int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it
    2016 :info:build                                 ^
    2017 :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2018 :info:build                                 uexons.Add(seg);
    2019 :info:build                                        ^
    2020 :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class
    2021 :info:build     void idxInsert(int idx, OBJ& item);
    2022 :info:build          ^
    2023 :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity'
    2024 :info:build     setCapacity(this->fCapacity+list.fCount);
    2025 :info:build     ^
    2026 :info:build     this->
    2027 :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here
    2028 :info:build                 qmrnas.Add(loc.mrnas);
    2029 :info:build                        ^
    2030 :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class
    2031 :info:build     void setCapacity(int NewCapacity);
    2032 :info:build          ^
    2033 :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity'
    2034 :info:build     setCapacity(this->fCapacity+list.fCount);
    2035 :info:build     ^
    2036 :info:build     this->
    2037 :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2038 :info:build                 qmexons.Add(loc.mexons);
    2039 :info:build                         ^
    2040 :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class
    2041 :info:build     void setCapacity(int NewCapacity);
    2042 :info:build          ^
    2043 :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert'
    2044 :info:build    idxInsert(result, *item);
    2045 :info:build    ^
    2046 :info:build    this->
    2047 :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2048 :info:build     int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it
    2049 :info:build                                 ^
    2050 :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2051 :info:build                                 uexons.Add(seg);
    2052 :info:build                                        ^
    2053 :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class
    2054 :info:build     void idxInsert(int idx, OBJ& item);
    2055 :info:build          ^
    2056 :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity'
    2057 :info:build     setCapacity(this->fCapacity+list.fCount);
    2058 :info:build     ^
    2059 :info:build     this->
    2060 :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here
    2061 :info:build                 qmrnas.Add(loc.mrnas);
    2062 :info:build                        ^
    2063 :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class
    2064 :info:build     void setCapacity(int NewCapacity);
    2065 :info:build          ^
    2066 :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity'
    2067 :info:build     setCapacity(this->fCapacity+list.fCount);
    2068 :info:build     ^
    2069 :info:build     this->
    2070 :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2071 :info:build                 qmexons.Add(loc.mexons);
    2072 :info:build                         ^
    2073 :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class
    2074 :info:build     void setCapacity(int NewCapacity);
    2075 :info:build          ^
    2076 :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert'
    2077 :info:build    idxInsert(result, *item);
    2078 :info:build    ^
    2079 :info:build    this->
    2080 :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2081 :info:build     int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it
    2082 :info:build                                 ^
    2083 :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2084 :info:build                                 uexons.Add(seg);
    2085 :info:build                                        ^
    2086 :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class
    2087 :info:build     void idxInsert(int idx, OBJ& item);
    2088 :info:build          ^
    2089 :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity'
    2090 :info:build     setCapacity(this->fCapacity+list.fCount);
    2091 :info:build     ^
    2092 :info:build     this->
    2093 :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here
    2094 :info:build                 qmrnas.Add(loc.mrnas);
    2095 :info:build                        ^
    2096 :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class
    2097 :info:build     void setCapacity(int NewCapacity);
    2098 :info:build          ^
    2099 :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity'
    2100 :info:build     setCapacity(this->fCapacity+list.fCount);
    2101 :info:build     ^
    2102 :info:build     this->
    2103 :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2104 :info:build                 qmexons.Add(loc.mexons);
    2105 :info:build                         ^
    2106 :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class
    2107 :info:build     void setCapacity(int NewCapacity);
    2108 :info:build          ^
    2109 :info:build 3 warnings and 3 errors generated.
    2110 :info:build In file included from cuffdiff.cpp:33:
    2111 :info:build In file included from /opt/local/include/boost/graph/adjacency_list.hpp:45:
    2112 :info:build In file included from /opt/local/include/boost/graph/named_graph.hpp:17:
    2113 :info:build /opt/local/include/boost/multi_index/hashed_index.hpp:1254:10: error: no member named 'BOOST_FOREACH' in namespace 'boost'
    2114 :info:build   boost::foreach::tag)
    2115 :info:build   ~~~~~~~^
    2116 :info:build ./common.h:26:25: note: expanded from macro 'foreach'
    2117 :info:build #define foreach         BOOST_FOREACH
    2118 :info:build                         ^
    2119 :info:build make[2]: *** [bundles.o] Error 1
    2120 :info:build 2 warnings and 3 errors generated.
    2121 :info:build make[2]: *** [filters.o] Error 1
    2122 :info:build 2 warnings and 3 errors generated.
    2123 :info:build 2 warnings and 3 errors generated.
    2124 :info:build 2 warnings and 3 errors generated.
    2125 :info:build make[2]: *** [biascorrection.o] Error 1
    2126 :info:build make[2]: *** [clustering.o] Error 1
    2127 :info:build make[2]: *** [abundances.o] Error 1
    2128 :info:build In file included from cufflinks.cpp:25:
    2129 :info:build In file included from ./clustering.h:38:
    2130 :info:build In file included from ./abundances.h:21:
    2131 :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable]
    2132 :info:build         foreach(AugmentedCuffOp& op, aug_ops)
    2133 :info:build                                  ^
    2134 :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH'
    2135 :info:build         for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true)
    2136 :info:build              ^
    2137 :info:build differential.cpp:632:8: warning: unused variable 'multi_transcript_locus' [-Wunused-variable]
    2138 :info:build                 bool multi_transcript_locus = samples[i]->transcripts.abundances().size() > 1;
    2139 :info:build                      ^
    2140 :info:build In file included from cufflinks.cpp:25:
    2141 :info:build In file included from ./clustering.h:38:
    2142 :info:build In file included from ./abundances.h:22:
    2143 :info:build In file included from ./bundles.h:21:
    2144 :info:build In file included from ./gtf_tracking.h:12:
    2145 :info:build In file included from ./gff.h:7:
    2146 :info:build In file included from ./GFaSeqGet.h:4:
    2147 :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable]
    2148 :info:build  int result=-1;
    2149 :info:build      ^
    2150 :info:build 1 warning generated.
    2151 :info:build In file included from cuffdiff.cpp:42:
    2152 :info:build ./differential.h:176:50: warning: unused variable 's2' [-Wunused-variable]
    2153 :info:build             const vector<shared_ptr<Scaffold> >& s2 =  bundles[i-1]->ref_scaffolds();
    2154 :info:build                                                  ^
    2155 :info:build cuffdiff.cpp:805:35: warning: unused variable 's2' [-Wunused-variable]
    2156 :info:build             const AbundanceGroup& s2 =  prev.transcripts;
    2157 :info:build                                   ^
    2158 :info:build In file included from assemble.cpp:48:
    2159 :info:build In file included from ./assemble.h:26:
    2160 :info:build In file included from ./bundles.h:21:
    2161 :info:build In file included from ./gtf_tracking.h:12:
    2162 :info:build In file included from ./gff.h:7:
    2163 :info:build In file included from ./GFaSeqGet.h:4:
    2164 :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert'
    2165 :info:build    idxInsert(result, *item);
    2166 :info:build    ^
    2167 :info:build    this->
    2168 :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2169 :info:build     int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it
    2170 :info:build                                 ^
    2171 :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2172 :info:build                                 uexons.Add(seg);
    2173 :info:build                                        ^
    2174 :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class
    2175 :info:build     void idxInsert(int idx, OBJ& item);
    2176 :info:build          ^
    2177 :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity'
    2178 :info:build     setCapacity(this->fCapacity+list.fCount);
    2179 :info:build     ^
    2180 :info:build     this->
    2181 :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here
    2182 :info:build                 qmrnas.Add(loc.mrnas);
    2183 :info:build                        ^
    2184 :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class
    2185 :info:build     void setCapacity(int NewCapacity);
    2186 :info:build          ^
    2187 :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity'
    2188 :info:build     setCapacity(this->fCapacity+list.fCount);
    2189 :info:build     ^
    2190 :info:build     this->
    2191 :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2192 :info:build                 qmexons.Add(loc.mexons);
    2193 :info:build                         ^
    2194 :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class
    2195 :info:build     void setCapacity(int NewCapacity);
    2196 :info:build          ^
    2197 :info:build In file included from differential.cpp:14:
    2198 :info:build In file included from ./abundances.h:22:
    2199 :info:build In file included from ./bundles.h:21:
    2200 :info:build In file included from ./gtf_tracking.h:12:
    2201 :info:build In file included from ./gff.h:7:
    2202 :info:build In file included from ./GFaSeqGet.h:4:
    2203 :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert'
    2204 :info:build    idxInsert(result, *item);
    2205 :info:build    ^
    2206 :info:build    this->
    2207 :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2208 :info:build     int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it
    2209 :info:build                                 ^
    2210 :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2211 :info:build                                 uexons.Add(seg);
    2212 :info:build                                        ^
    2213 :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class
    2214 :info:build     void idxInsert(int idx, OBJ& item);
    2215 :info:build          ^
    2216 :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity'
    2217 :info:build     setCapacity(this->fCapacity+list.fCount);
    2218 :info:build     ^
    2219 :info:build     this->
    2220 :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here
    2221 :info:build                 qmrnas.Add(loc.mrnas);
    2222 :info:build                        ^
    2223 :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class
    2224 :info:build     void setCapacity(int NewCapacity);
    2225 :info:build          ^
    2226 :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity'
    2227 :info:build     setCapacity(this->fCapacity+list.fCount);
    2228 :info:build     ^
    2229 :info:build     this->
    2230 :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2231 :info:build                 qmexons.Add(loc.mexons);
    2232 :info:build                         ^
    2233 :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class
    2234 :info:build     void setCapacity(int NewCapacity);
    2235 :info:build          ^
    2236 :info:build In file included from assemble.cpp:19:
    2237 :info:build In file included from ./lemon/topology.h:22:
    2238 :info:build In file included from ./lemon/dfs.h:26:
    2239 :info:build In file included from ./lemon/list_graph.h:26:
    2240 :info:build ./lemon/bits/base_extender.h:362:11: error: use of undeclared identifier 'aNode'
    2241 :info:build                         return aNode(edge);
    2242 :info:build                                ^
    2243 :info:build                                this->
    2244 :info:build assemble.cpp:258:28: note: in instantiation of member function 'lemon::BidirBpUGraphExtender<lemon::SmartBpUGraphBase>::source' requested here
    2245 :info:build                 ReachGraph::ANode a = bp.source(i);
    2246 :info:build                                          ^
    2247 :info:build ./lemon/smart_graph.h:912:8: note: must qualify identifier to find this declaration in dependent base class
    2248 :info:build                 Node aNode(const UEdge& edge) const {
    2249 :info:build                      ^
    2250 :info:build ./lemon/smart_graph.h:919:15: note: must qualify identifier to find this declaration in dependent base class
    2251 :info:build                 static bool aNode(const Node& node) {
    2252 :info:build                             ^
    2253 :info:build In file included from assemble.cpp:19:
    2254 :info:build In file included from ./lemon/topology.h:22:
    2255 :info:build In file included from ./lemon/dfs.h:26:
    2256 :info:build In file included from ./lemon/list_graph.h:26:
    2257 :info:build ./lemon/bits/base_extender.h:365:11: error: use of undeclared identifier 'bNode'
    2258 :info:build                         return bNode(edge);
    2259 :info:build                                ^
    2260 :info:build                                this->
    2261 :info:build assemble.cpp:259:28: note: in instantiation of member function 'lemon::BidirBpUGraphExtender<lemon::SmartBpUGraphBase>::target' requested here
    2262 :info:build                 ReachGraph::BNode b = bp.target(i);
    2263 :info:build                                          ^
    2264 :info:build ./lemon/smart_graph.h:915:8: note: must qualify identifier to find this declaration in dependent base class
    2265 :info:build                 Node bNode(const UEdge& edge) const {
    2266 :info:build                      ^
    2267 :info:build ./lemon/smart_graph.h:923:15: note: must qualify identifier to find this declaration in dependent base class
    2268 :info:build                 static bool bNode(const Node& node) {
    2269 :info:build                             ^
    2270 :info:build In file included from cuffdiff.cpp:27:
    2271 :info:build In file included from ./bundles.h:21:
    2272 :info:build In file included from ./gtf_tracking.h:12:
    2273 :info:build In file included from ./gff.h:7:
    2274 :info:build In file included from ./GFaSeqGet.h:4:
    2275 :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert'
    2276 :info:build    idxInsert(result, *item);
    2277 :info:build    ^
    2278 :info:build    this->
    2279 :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2280 :info:build     int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it
    2281 :info:build                                 ^
    2282 :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2283 :info:build                                 uexons.Add(seg);
    2284 :info:build                                        ^
    2285 :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class
    2286 :info:build     void idxInsert(int idx, OBJ& item);
    2287 :info:build          ^
    2288 :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity'
    2289 :info:build     setCapacity(this->fCapacity+list.fCount);
    2290 :info:build     ^
    2291 :info:build     this->
    2292 :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here
    2293 :info:build                 qmrnas.Add(loc.mrnas);
    2294 :info:build                        ^
    2295 :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class
    2296 :info:build     void setCapacity(int NewCapacity);
    2297 :info:build          ^
    2298 :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity'
    2299 :info:build     setCapacity(this->fCapacity+list.fCount);
    2300 :info:build     ^
    2301 :info:build     this->
    2302 :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2303 :info:build                 qmexons.Add(loc.mexons);
    2304 :info:build                         ^
    2305 :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class
    2306 :info:build     void setCapacity(int NewCapacity);
    2307 :info:build          ^
    2308 :info:build 3 warnings generated.
    2309 :info:build graph_optimize.cpp:281:30: warning: unused variable 'e' [-Wunused-variable]
    2310 :info:build                                         ContainmentGraph::UEdge e = containment.addEdge(nj.first,
    2311 :info:build                                                                 ^
    2312 :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert'
    2313 :info:build    idxInsert(result, *item);
    2314 :info:build    ^
    2315 :info:build    this->
    2316 :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2317 :info:build     int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it
    2318 :info:build                                 ^
    2319 :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2320 :info:build                                 uexons.Add(seg);
    2321 :info:build                                        ^
    2322 :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class
    2323 :info:build     void idxInsert(int idx, OBJ& item);
    2324 :info:build          ^
    2325 :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity'
    2326 :info:build     setCapacity(this->fCapacity+list.fCount);
    2327 :info:build     ^
    2328 :info:build     this->
    2329 :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here
    2330 :info:build                 qmrnas.Add(loc.mrnas);
    2331 :info:build                        ^
    2332 :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class
    2333 :info:build     void setCapacity(int NewCapacity);
    2334 :info:build          ^
    2335 :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity'
    2336 :info:build     setCapacity(this->fCapacity+list.fCount);
    2337 :info:build     ^
    2338 :info:build     this->
    2339 :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2340 :info:build                 qmexons.Add(loc.mexons);
    2341 :info:build                         ^
    2342 :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class
    2343 :info:build     void setCapacity(int NewCapacity);
    2344 :info:build          ^
    2345 :info:build 4 warnings and 4 errors generated.
    2346 :info:build make[2]: *** [differential.o] Error 1
    2347 :info:build 5 warnings and 5 errors generated.
    2348 :info:build 4 warnings and 4 errors generated.
    2349 :info:build make[2]: *** [assemble.o] Error 1
    2350 :info:build In file included from graph_optimize.cpp:13:
    2351 :info:build In file included from ./graph_optimize.h:17:
    2352 :info:build In file included from ./bundles.h:21:
    2353 :info:build In file included from ./gtf_tracking.h:12:
    2354 :info:build In file included from ./gff.h:7:
    2355 :info:build In file included from ./GFaSeqGet.h:4:
    2356 :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert'
    2357 :info:build    idxInsert(result, *item);
    2358 :info:build    ^
    2359 :info:build    this->
    2360 :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2361 :info:build     int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it
    2362 :info:build                                 ^
    2363 :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2364 :info:build                                 uexons.Add(seg);
    2365 :info:build                                        ^
    2366 :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class
    2367 :info:build     void idxInsert(int idx, OBJ& item);
    2368 :info:build          ^
    2369 :info:build make[2]: *** [cuffdiff.o] Error 1
    2370 :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity'
    2371 :info:build     setCapacity(this->fCapacity+list.fCount);
    2372 :info:build     ^
    2373 :info:build     this->
    2374 :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here
    2375 :info:build                 qmrnas.Add(loc.mrnas);
    2376 :info:build                        ^
    2377 :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class
    2378 :info:build     void setCapacity(int NewCapacity);
    2379 :info:build          ^
    2380 :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity'
    2381 :info:build     setCapacity(this->fCapacity+list.fCount);
    2382 :info:build     ^
    2383 :info:build     this->
    2384 :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here
    2385 :info:build                 qmexons.Add(loc.mexons);
    2386 :info:build                         ^
    2387 :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class
    2388 :info:build     void setCapacity(int NewCapacity);
    2389 :info:build          ^
    2390 :info:build 48 warnings generated.
    2391 :info:build 2 warnings and 4 errors generated.
    2392 :info:build make[2]: *** [cufflinks.o] Error 1
    2393 :info:build In file included from graph_optimize.cpp:16:
    2394 :info:build In file included from ./lemon/topology.h:22:
    2395 :info:build In file included from ./lemon/dfs.h:26:
    2396 :info:build In file included from ./lemon/list_graph.h:26:
    2397 :info:build ./lemon/bits/base_extender.h:362:11: error: use of undeclared identifier 'aNode'
    2398 :info:build                         return aNode(edge);
    2399 :info:build                                ^
    2400 :info:build                                this->
    2401 :info:build ./matching_merge.h:68:41: note: in instantiation of member function 'lemon::BidirBpUGraphExtender<lemon::SmartBpUGraphBase>::source' requested here
    2402 :info:build                                 ReachGraph::ANode a_match_to_b = bp.source(matched_b_nodes[b]);
    2403 :info:build                                                                     ^
    2404 :info:build ./matching_merge.h:87:5: note: in instantiation of function template specialization 'make_chains_from_matching<lemon::MaxBipartiteMatching<lemon::SmartBpUGraph> >' requested here
    2405 :info:build     make_chains_from_matching(bp_graph, matcher, chains);
    2406 :info:build     ^
    2407 :info:build graph_optimize.cpp:304:9: note: in instantiation of function template specialization 'merge_from_matching<lemon::MaxBipartiteMatching<lemon::SmartBpUGraph> >' requested here
    2408 :info:build         merge_from_matching(containment, matcher, scaffolds);
    2409 :info:build         ^
    2410 :info:build ./lemon/smart_graph.h:912:8: note: must qualify identifier to find this declaration in dependent base class
    2411 :info:build                 Node aNode(const UEdge& edge) const {
    2412 :info:build                      ^
    2413 :info:build ./lemon/smart_graph.h:919:15: note: must qualify identifier to find this declaration in dependent base class
    2414 :info:build                 static bool aNode(const Node& node) {
    2415 :info:build                             ^
    2416 :info:build 3 warnings and 5 errors generated.
    2417 :info:build make[2]: *** [graph_optimize.o] Error 1
    2418 :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/cufflinks-0.9.3/src'
    2419 :info:build make[1]: *** [all-recursive] Error 1
    2420 :info:build make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/cufflinks-0.9.3'
    2421 :info:build make: *** [all] Error 2
    2422 :info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/cufflinks-0.9.3'
    2423 :info:build Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/cufflinks-0.9.3" && /usr/bin/make -j24 -w all
    2424 :info:build Exit code: 2
    2425 :error:build org.macports.build for port cufflinks returned: command execution failed
    2426 :debug:build Error code: CHILDSTATUS 13164 2
    2427 :debug:build Backtrace: command execution failed
    2428     while executing
    2429 "system -nice 0 $fullcmdstring"
    2430     ("eval" body line 1)
    2431     invoked from within
    2432 "eval system $notty $nice \$fullcmdstring"
    2433     invoked from within
    2434 "command_exec build"
    2435     (procedure "portbuild::build_main" line 8)
    2436     invoked from within
    2437 "$procedure $targetname"
    2438 :info:build Warning: targets not executed for cufflinks: org.macports.activate org.macports.build org.macports.destroot org.macports.install
    2439 :notice:build Please see the log file for port cufflinks for details:
    2440     /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/main.log
    2441  -----