Changes between Version 1 and Version 2 of Ticket #45401, comment 3


Ignore:
Timestamp:
Nov 24, 2014, 3:59:48 AM (3 years ago)
Author:
ryandesign (Ryan Schmidt)
Comment:

Legend:

Unmodified
Added
Removed
Modified
  • Ticket #45401, comment 3

    v1 v2  
    55> port install pymol
    66
    7 main.log:
    8 
    9 version:1
    10 :debug:main Found Dependency: path: /usr/bin filename: svn regex: ^svn$
    11 :debug:main epoch: in tree: 2 installed: 2
    12 :debug:main python27 2.7.8_3 exists in the ports tree
    13 :debug:main python27 2.7.8_3  is the latest installed
    14 :debug:main python27 2.7.8_3  is active
    15 :debug:main Merging existing variants '' into variants
    16 :debug:main new fully merged portvariants:
    17 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/python27
    18 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    19 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
    20 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    21 :debug:main universal variant already exists, so not adding the default one
    22 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    23 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    24 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    25 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    26 :debug:main No need to upgrade! python27 2.7.8_3 >= python27 2.7.8_3
    27 :debug:main epoch: in tree: 2 installed: 2
    28 :debug:main gettext 0.19.3_0 exists in the ports tree
    29 :debug:main gettext 0.19.3_0  is the latest installed
    30 :debug:main gettext 0.19.3_0  is active
    31 :debug:main Merging existing variants '' into variants
    32 :debug:main new fully merged portvariants:
    33 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext
    34 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    35 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
    36 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    37 :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    38 :debug:main compiler clang 600.0.51 not blacklisted because it doesn't match {clang < 211.10.1}
    39 :debug:main universal variant already exists, so not adding the default one
    40 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    41 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    42 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    43 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    44 :debug:main No need to upgrade! gettext 0.19.3_0 >= gettext 0.19.3_0
    45 :debug:main epoch: in tree: 0 installed: 0
    46 :debug:main expat 2.1.0_0 exists in the ports tree
    47 :debug:main expat 2.1.0_0  is the latest installed
    48 :debug:main expat 2.1.0_0  is active
    49 :debug:main Merging existing variants '' into variants
    50 :debug:main new fully merged portvariants:
    51 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat
    52 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    53 :debug:main adding the default universal variant
    54 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    55 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    56 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    57 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    58 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    59 :debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0
    60 :debug:main epoch: in tree: 0 installed: 0
    61 :debug:main libiconv 1.14_0 exists in the ports tree
    62 :debug:main libiconv 1.14_0  is the latest installed
    63 :debug:main libiconv 1.14_0  is active
    64 :debug:main Merging existing variants '' into variants
    65 :debug:main new fully merged portvariants:
    66 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv
    67 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    68 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    69 :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    70 :debug:main universal variant already exists, so not adding the default one
    71 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    72 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    73 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    74 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    75 :debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0
    76 :debug:main epoch: in tree: 0 installed: 0
    77 :debug:main ncurses 5.9_2 exists in the ports tree
    78 :debug:main ncurses 5.9_2  is the latest installed
    79 :debug:main ncurses 5.9_2  is active
    80 :debug:main Merging existing variants '' into variants
    81 :debug:main new fully merged portvariants:
    82 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses
    83 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    84 :debug:main adding the default universal variant
    85 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    86 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    87 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    88 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    89 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    90 :debug:main No need to upgrade! ncurses 5.9_2 >= ncurses 5.9_2
    91 :debug:main epoch: in tree: 0 installed: 0
    92 :debug:main zlib 1.2.8_0 exists in the ports tree
    93 :debug:main zlib 1.2.8_0  is the latest installed
    94 :debug:main zlib 1.2.8_0  is active
    95 :debug:main Merging existing variants '' into variants
    96 :debug:main new fully merged portvariants:
    97 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib
    98 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    99 :debug:main Sourcing PortGroup xcodeversion 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl
    100 :debug:main adding the default universal variant
    101 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    102 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    103 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    104 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    105 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    106 :debug:main No need to upgrade! zlib 1.2.8_0 >= zlib 1.2.8_0
    107 :debug:main epoch: in tree: 1 installed: 1
    108 :debug:main openssl 1.0.1j_0 exists in the ports tree
    109 :debug:main openssl 1.0.1j_0  is the latest installed
    110 :debug:main openssl 1.0.1j_0  is active
    111 :debug:main Merging existing variants '' into variants
    112 :debug:main new fully merged portvariants:
    113 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/openssl
    114 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    115 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    116 :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    117 :debug:main universal variant already exists, so not adding the default one
    118 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    119 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    120 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    121 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    122 :debug:main No need to upgrade! openssl 1.0.1j_0 >= openssl 1.0.1j_0
    123 :debug:main epoch: in tree: 0 installed: 0
    124 :debug:main sqlite3 3.8.7_0 exists in the ports tree
    125 :debug:main sqlite3 3.8.7_0  is the latest installed
    126 :debug:main sqlite3 3.8.7_0  is active
    127 :debug:main Merging existing variants '' into variants
    128 :debug:main new fully merged portvariants:
    129 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/sqlite3
    130 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    131 :debug:main adding the default universal variant
    132 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    133 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    134 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    135 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    136 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    137 :debug:main No need to upgrade! sqlite3 3.8.7_0 >= sqlite3 3.8.7_0
    138 :debug:main epoch: in tree: 20090923 installed: 20090923
    139 :debug:main libedit 20121213-3.0_0 exists in the ports tree
    140 :debug:main libedit 20121213-3.0_0  is the latest installed
    141 :debug:main libedit 20121213-3.0_0  is active
    142 :debug:main Merging existing variants '' into variants
    143 :debug:main new fully merged portvariants:
    144 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libedit
    145 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    146 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    147 :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    148 :debug:main universal variant already exists, so not adding the default one
    149 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    150 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    151 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    152 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    153 :debug:main No need to upgrade! libedit 20121213-3.0_0 >= libedit 20121213-3.0_0
    154 :debug:main epoch: in tree: 0 installed: 0
    155 :debug:main db48 4.8.30_3 exists in the ports tree
    156 :debug:main db48 4.8.30_3  is the latest installed
    157 :debug:main db48 4.8.30_3  is active
    158 :debug:main Merging existing variants '' into variants
    159 :debug:main new fully merged portvariants:
    160 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/db48
    161 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    162 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    163 :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    164 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
    165 :debug:main universal variant already exists, so not adding the default one
    166 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    167 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    168 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    169 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    170 :debug:main No need to upgrade! db48 4.8.30_3 >= db48 4.8.30_3
    171 :debug:main epoch: in tree: 0 installed: 0
    172 :debug:main db_select 0.1_2 exists in the ports tree
    173 :debug:main db_select 0.1_2  is the latest installed
    174 :debug:main db_select 0.1_2  is active
    175 :debug:main Merging existing variants '' into variants
    176 :debug:main new fully merged portvariants:
    177 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/db_select
    178 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    179 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
    180 :debug:main universal_variant is false, so not adding the default universal variant
    181 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    182 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    183 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    184 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    185 :debug:main No need to upgrade! db_select 0.1_2 >= db_select 0.1_2
    186 :debug:main epoch: in tree: 0 installed: 0
    187 :debug:main bzip2 1.0.6_0 exists in the ports tree
    188 :debug:main bzip2 1.0.6_0  is the latest installed
    189 :debug:main bzip2 1.0.6_0  is active
    190 :debug:main Merging existing variants '' into variants
    191 :debug:main new fully merged portvariants:
    192 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/bzip2
    193 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    194 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    195 :debug:main universal variant already exists, so not adding the default one
    196 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    197 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    198 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    199 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    200 :debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0
    201 :debug:main epoch: in tree: 0 installed: 0
    202 :debug:main python_select 0.3_3 exists in the ports tree
    203 :debug:main python_select 0.3_3  is the latest installed
    204 :debug:main python_select 0.3_3  is active
    205 :debug:main Merging existing variants '' into variants
    206 :debug:main new fully merged portvariants:
    207 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/python_select
    208 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    209 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
    210 :debug:main universal_variant is false, so not adding the default universal variant
    211 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    212 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    213 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    214 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    215 :debug:main No need to upgrade! python_select 0.3_3 >= python_select 0.3_3
    216 :debug:main epoch: in tree: 0 installed: 0
    217 :debug:main freeglut 2.8.1_0 exists in the ports tree
    218 :debug:main freeglut 2.8.1_0  is the latest installed
    219 :debug:main freeglut 2.8.1_0  is active
    220 :debug:main Merging existing variants '' into variants
    221 :debug:main new fully merged portvariants:
    222 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/freeglut
    223 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    224 :debug:main adding the default universal variant
    225 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    226 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    227 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    228 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    229 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    230 :debug:main No need to upgrade! freeglut 2.8.1_0 >= freeglut 2.8.1_0
    231 :debug:main epoch: in tree: 1 installed: 1
    232 :debug:main mesa 8.0.5_3 exists in the ports tree
    233 :debug:main mesa 8.0.5_3 +python27 is the latest installed
    234 :debug:main mesa 8.0.5_3 +python27 is active
    235 :debug:main Merging existing variants '+python27' into variants
    236 :debug:main new fully merged portvariants: python27 +
    237 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/mesa
    238 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    239 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    240 :debug:main universal variant already exists, so not adding the default one
    241 :debug:main Executing variant python27 provides python27
    242 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    243 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    244 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    245 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    246 :debug:main No need to upgrade! mesa 8.0.5_3 >= mesa 8.0.5_3
    247 :debug:main epoch: in tree: 0 installed: 0
    248 :debug:main xorg-glproto 1.4.17_0 exists in the ports tree
    249 :debug:main xorg-glproto 1.4.17_0  is the latest installed
    250 :debug:main xorg-glproto 1.4.17_0  is active
    251 :debug:main Merging existing variants '' into variants
    252 :debug:main new fully merged portvariants:
    253 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-glproto
    254 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    255 :debug:main only one arch supported, so not adding the default universal variant
    256 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    257 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    258 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    259 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    260 :debug:main No need to upgrade! xorg-glproto 1.4.17_0 >= xorg-glproto 1.4.17_0
    261 :debug:main epoch: in tree: 0 installed: 0
    262 :debug:main xorg-dri2proto 2.8_0 exists in the ports tree
    263 :debug:main xorg-dri2proto 2.8_0  is the latest installed
    264 :debug:main xorg-dri2proto 2.8_0  is active
    265 :debug:main Merging existing variants '' into variants
    266 :debug:main new fully merged portvariants:
    267 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-dri2proto
    268 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    269 :debug:main only one arch supported, so not adding the default universal variant
    270 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    271 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    272 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    273 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    274 :debug:main No need to upgrade! xorg-dri2proto 2.8_0 >= xorg-dri2proto 2.8_0
    275 :debug:main epoch: in tree: 0 installed: 0
    276 :debug:main xorg-libXfixes 5.0.1_0 exists in the ports tree
    277 :debug:main xorg-libXfixes 5.0.1_0  is the latest installed
    278 :debug:main xorg-libXfixes 5.0.1_0  is active
    279 :debug:main Merging existing variants '' into variants
    280 :debug:main new fully merged portvariants:
    281 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXfixes
    282 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    283 :debug:main adding the default universal variant
    284 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    285 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    286 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    287 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    288 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    289 :debug:main No need to upgrade! xorg-libXfixes 5.0.1_0 >= xorg-libXfixes 5.0.1_0
    290 :debug:main epoch: in tree: 0 installed: 0
    291 :debug:main xorg-libX11 1.6.2_0 exists in the ports tree
    292 :debug:main xorg-libX11 1.6.2_0  is the latest installed
    293 :debug:main xorg-libX11 1.6.2_0  is active
    294 :debug:main Merging existing variants '' into variants
    295 :debug:main new fully merged portvariants:
    296 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libX11
    297 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    298 :debug:main adding the default universal variant
    299 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    300 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    301 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    302 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    303 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    304 :debug:main No need to upgrade! xorg-libX11 1.6.2_0 >= xorg-libX11 1.6.2_0
    305 :debug:main epoch: in tree: 0 installed: 0
    306 :debug:main xorg-libXdmcp 1.1.1_0 exists in the ports tree
    307 :debug:main xorg-libXdmcp 1.1.1_0  is the latest installed
    308 :debug:main xorg-libXdmcp 1.1.1_0  is active
    309 :debug:main Merging existing variants '' into variants
    310 :debug:main new fully merged portvariants:
    311 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXdmcp
    312 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    313 :debug:main adding the default universal variant
    314 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    315 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    316 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    317 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    318 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    319 :debug:main No need to upgrade! xorg-libXdmcp 1.1.1_0 >= xorg-libXdmcp 1.1.1_0
    320 :debug:main epoch: in tree: 0 installed: 0
    321 :debug:main xorg-libXau 1.0.8_0 exists in the ports tree
    322 :debug:main xorg-libXau 1.0.8_0  is the latest installed
    323 :debug:main xorg-libXau 1.0.8_0  is active
    324 :debug:main Merging existing variants '' into variants
    325 :debug:main new fully merged portvariants:
    326 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXau
    327 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    328 :debug:main adding the default universal variant
    329 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    330 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    331 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    332 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    333 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    334 :debug:main No need to upgrade! xorg-libXau 1.0.8_0 >= xorg-libXau 1.0.8_0
    335 :debug:main epoch: in tree: 0 installed: 0
    336 :debug:main xorg-xproto 7.0.26_0 exists in the ports tree
    337 :debug:main xorg-xproto 7.0.26_0  is the latest installed
    338 :debug:main xorg-xproto 7.0.26_0  is active
    339 :debug:main Merging existing variants '' into variants
    340 :debug:main new fully merged portvariants:
    341 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xproto
    342 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    343 :debug:main only one arch supported, so not adding the default universal variant
    344 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    345 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    346 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    347 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    348 :debug:main No need to upgrade! xorg-xproto 7.0.26_0 >= xorg-xproto 7.0.26_0
    349 :debug:main epoch: in tree: 0 installed: 0
    350 :debug:main xorg-libxcb 1.11_0 exists in the ports tree
    351 :debug:main xorg-libxcb 1.11_0 +python27 is the latest installed
    352 :debug:main xorg-libxcb 1.11_0 +python27 is active
    353 :debug:main Merging existing variants '+python27' into variants
    354 :debug:main new fully merged portvariants: python27 +
    355 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libxcb
    356 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    357 :debug:main adding the default universal variant
    358 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    359 :debug:main Executing variant python27 provides python27
    360 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    361 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    362 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    363 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    364 :debug:main No need to upgrade! xorg-libxcb 1.11_0 >= xorg-libxcb 1.11_0
    365 :debug:main epoch: in tree: 0 installed: 0
    366 :debug:main xorg-xcb-proto 1.11_0 exists in the ports tree
    367 :debug:main xorg-xcb-proto 1.11_0 +python27 is the latest installed
    368 :debug:main xorg-xcb-proto 1.11_0 +python27 is active
    369 :debug:main Merging existing variants '+python27' into variants
    370 :debug:main new fully merged portvariants: python27 +
    371 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xcb-proto
    372 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    373 :debug:main only one arch supported, so not adding the default universal variant
    374 :debug:main Executing variant python27 provides python27
    375 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    376 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    377 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    378 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    379 :debug:main No need to upgrade! xorg-xcb-proto 1.11_0 >= xorg-xcb-proto 1.11_0
    380 :debug:main epoch: in tree: 0 installed: 0
    381 :debug:main libxml2 2.9.1_0 exists in the ports tree
    382 :debug:main libxml2 2.9.1_0  is the latest installed
    383 :debug:main libxml2 2.9.1_0  is active
    384 :debug:main Merging existing variants '' into variants
    385 :debug:main new fully merged portvariants:
    386 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libxml2
    387 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    388 :debug:main adding the default universal variant
    389 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    390 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    391 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    392 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    393 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    394 :debug:main No need to upgrade! libxml2 2.9.1_0 >= libxml2 2.9.1_0
    395 :debug:main epoch: in tree: 0 installed: 0
    396 :debug:main xz 5.0.7_0 exists in the ports tree
    397 :debug:main xz 5.0.7_0  is the latest installed
    398 :debug:main xz 5.0.7_0  is active
    399 :debug:main Merging existing variants '' into variants
    400 :debug:main new fully merged portvariants:
    401 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/xz
    402 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    403 :debug:main adding the default universal variant
    404 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    405 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    406 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    407 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    408 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    409 :debug:main No need to upgrade! xz 5.0.7_0 >= xz 5.0.7_0
    410 :debug:main epoch: in tree: 0 installed: 0
    411 :debug:main xorg-libpthread-stubs 0.3_0 exists in the ports tree
    412 :debug:main xorg-libpthread-stubs 0.3_0  is the latest installed
    413 :debug:main xorg-libpthread-stubs 0.3_0  is active
    414 :debug:main Merging existing variants '' into variants
    415 :debug:main new fully merged portvariants:
    416 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libpthread-stubs
    417 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    418 :debug:main only one arch supported, so not adding the default universal variant
    419 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    420 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    421 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    422 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    423 :debug:main No need to upgrade! xorg-libpthread-stubs 0.3_0 >= xorg-libpthread-stubs 0.3_0
    424 :debug:main epoch: in tree: 0 installed: 0
    425 :debug:main xorg-kbproto 1.0.6_0 exists in the ports tree
    426 :debug:main xorg-kbproto 1.0.6_0  is the latest installed
    427 :debug:main xorg-kbproto 1.0.6_0  is active
    428 :debug:main Merging existing variants '' into variants
    429 :debug:main new fully merged portvariants:
    430 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-kbproto
    431 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    432 :debug:main only one arch supported, so not adding the default universal variant
    433 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    434 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    435 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    436 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    437 :debug:main No need to upgrade! xorg-kbproto 1.0.6_0 >= xorg-kbproto 1.0.6_0
    438 :debug:main epoch: in tree: 0 installed: 0
    439 :debug:main xorg-fixesproto 5.0_0 exists in the ports tree
    440 :debug:main xorg-fixesproto 5.0_0  is the latest installed
    441 :debug:main xorg-fixesproto 5.0_0  is active
    442 :debug:main Merging existing variants '' into variants
    443 :debug:main new fully merged portvariants:
    444 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-fixesproto
    445 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    446 :debug:main only one arch supported, so not adding the default universal variant
    447 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    448 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    449 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    450 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    451 :debug:main No need to upgrade! xorg-fixesproto 5.0_0 >= xorg-fixesproto 5.0_0
    452 :debug:main epoch: in tree: 0 installed: 0
    453 :debug:main xorg-xextproto 7.3.0_0 exists in the ports tree
    454 :debug:main xorg-xextproto 7.3.0_0  is the latest installed
    455 :debug:main xorg-xextproto 7.3.0_0  is active
    456 :debug:main Merging existing variants '' into variants
    457 :debug:main new fully merged portvariants:
    458 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xextproto
    459 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    460 :debug:main only one arch supported, so not adding the default universal variant
    461 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    462 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    463 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    464 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    465 :debug:main No need to upgrade! xorg-xextproto 7.3.0_0 >= xorg-xextproto 7.3.0_0
    466 :debug:main epoch: in tree: 0 installed: 0
    467 :debug:main xorg-libXi 1.7.4_0 exists in the ports tree
    468 :debug:main xorg-libXi 1.7.4_0  is the latest installed
    469 :debug:main xorg-libXi 1.7.4_0  is active
    470 :debug:main Merging existing variants '' into variants
    471 :debug:main new fully merged portvariants:
    472 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXi
    473 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    474 :debug:main adding the default universal variant
    475 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    476 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    477 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    478 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    479 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    480 :debug:main No need to upgrade! xorg-libXi 1.7.4_0 >= xorg-libXi 1.7.4_0
    481 :debug:main epoch: in tree: 0 installed: 0
    482 :debug:main xorg-libXext 1.3.3_0 exists in the ports tree
    483 :debug:main xorg-libXext 1.3.3_0  is the latest installed
    484 :debug:main xorg-libXext 1.3.3_0  is active
    485 :debug:main Merging existing variants '' into variants
    486 :debug:main new fully merged portvariants:
    487 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXext
    488 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    489 :debug:main adding the default universal variant
    490 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    491 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    492 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    493 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    494 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    495 :debug:main No need to upgrade! xorg-libXext 1.3.3_0 >= xorg-libXext 1.3.3_0
    496 :debug:main epoch: in tree: 0 installed: 0
    497 :debug:main xorg-inputproto 2.3.1_0 exists in the ports tree
    498 :debug:main xorg-inputproto 2.3.1_0  is the latest installed
    499 :debug:main xorg-inputproto 2.3.1_0  is active
    500 :debug:main Merging existing variants '' into variants
    501 :debug:main new fully merged portvariants:
    502 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-inputproto
    503 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    504 :debug:main only one arch supported, so not adding the default universal variant
    505 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    506 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    507 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    508 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    509 :debug:main No need to upgrade! xorg-inputproto 2.3.1_0 >= xorg-inputproto 2.3.1_0
    510 :debug:main epoch: in tree: 0 installed: 0
    511 :debug:main xorg-libXmu 1.1.2_0 exists in the ports tree
    512 :debug:main xorg-libXmu 1.1.2_0  is the latest installed
    513 :debug:main xorg-libXmu 1.1.2_0  is active
    514 :debug:main Merging existing variants '' into variants
    515 :debug:main new fully merged portvariants:
    516 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXmu
    517 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    518 :debug:main adding the default universal variant
    519 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    520 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    521 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    522 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    523 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    524 :debug:main No need to upgrade! xorg-libXmu 1.1.2_0 >= xorg-libXmu 1.1.2_0
    525 :debug:main epoch: in tree: 0 installed: 0
    526 :debug:main xorg-libXt 1.1.4_0 exists in the ports tree
    527 :debug:main xorg-libXt 1.1.4_0  is the latest installed
    528 :debug:main xorg-libXt 1.1.4_0  is active
    529 :debug:main Merging existing variants '' into variants
    530 :debug:main new fully merged portvariants:
    531 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXt
    532 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    533 :debug:main adding the default universal variant
    534 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    535 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    536 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    537 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    538 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    539 :debug:main No need to upgrade! xorg-libXt 1.1.4_0 >= xorg-libXt 1.1.4_0
    540 :debug:main epoch: in tree: 0 installed: 0
    541 :debug:main xorg-libsm 1.2.1_0 exists in the ports tree
    542 :debug:main xorg-libsm 1.2.1_0  is the latest installed
    543 :debug:main xorg-libsm 1.2.1_0  is active
    544 :debug:main Merging existing variants '' into variants
    545 :debug:main new fully merged portvariants:
    546 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libsm
    547 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    548 :debug:main adding the default universal variant
    549 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    550 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    551 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    552 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    553 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    554 :debug:main No need to upgrade! xorg-libsm 1.2.1_0 >= xorg-libsm 1.2.1_0
    555 :debug:main epoch: in tree: 0 installed: 0
    556 :debug:main xorg-libice 1.0.8_0 exists in the ports tree
    557 :debug:main xorg-libice 1.0.8_0  is the latest installed
    558 :debug:main xorg-libice 1.0.8_0  is active
    559 :debug:main Merging existing variants '' into variants
    560 :debug:main new fully merged portvariants:
    561 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libice
    562 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    563 :debug:main adding the default universal variant
    564 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    565 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    566 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    567 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    568 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    569 :debug:main No need to upgrade! xorg-libice 1.0.8_0 >= xorg-libice 1.0.8_0
    570 :debug:main epoch: in tree: 0 installed: 0
    571 :debug:main xorg-libXrandr 1.4.2_0 exists in the ports tree
    572 :debug:main xorg-libXrandr 1.4.2_0  is the latest installed
    573 :debug:main xorg-libXrandr 1.4.2_0  is active
    574 :debug:main Merging existing variants '' into variants
    575 :debug:main new fully merged portvariants:
    576 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXrandr
    577 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    578 :debug:main adding the default universal variant
    579 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    580 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    581 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    582 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    583 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    584 :debug:main No need to upgrade! xorg-libXrandr 1.4.2_0 >= xorg-libXrandr 1.4.2_0
    585 :debug:main epoch: in tree: 0 installed: 0
    586 :debug:main xrender 0.9.8_0 exists in the ports tree
    587 :debug:main xrender 0.9.8_0  is the latest installed
    588 :debug:main xrender 0.9.8_0  is active
    589 :debug:main Merging existing variants '' into variants
    590 :debug:main new fully merged portvariants:
    591 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xrender
    592 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    593 :debug:main adding the default universal variant
    594 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    595 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    596 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    597 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    598 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    599 :debug:main No need to upgrade! xrender 0.9.8_0 >= xrender 0.9.8_0
    600 :debug:main epoch: in tree: 0 installed: 0
    601 :debug:main xorg-renderproto 0.11.1_0 exists in the ports tree
    602 :debug:main xorg-renderproto 0.11.1_0  is the latest installed
    603 :debug:main xorg-renderproto 0.11.1_0  is active
    604 :debug:main Merging existing variants '' into variants
    605 :debug:main new fully merged portvariants:
    606 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-renderproto
    607 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    608 :debug:main only one arch supported, so not adding the default universal variant
    609 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    610 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    611 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    612 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    613 :debug:main No need to upgrade! xorg-renderproto 0.11.1_0 >= xorg-renderproto 0.11.1_0
    614 :debug:main epoch: in tree: 0 installed: 0
    615 :debug:main xorg-randrproto 1.4.0_0 exists in the ports tree
    616 :debug:main xorg-randrproto 1.4.0_0  is the latest installed
    617 :debug:main xorg-randrproto 1.4.0_0  is active
    618 :debug:main Merging existing variants '' into variants
    619 :debug:main new fully merged portvariants:
    620 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-randrproto
    621 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    622 :debug:main only one arch supported, so not adding the default universal variant
    623 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    624 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    625 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    626 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    627 :debug:main No need to upgrade! xorg-randrproto 1.4.0_0 >= xorg-randrproto 1.4.0_0
    628 :debug:main epoch: in tree: 0 installed: 0
    629 :debug:main xorg-libXxf86vm 1.1.3_0 exists in the ports tree
    630 :debug:main xorg-libXxf86vm 1.1.3_0  is the latest installed
    631 :debug:main xorg-libXxf86vm 1.1.3_0  is active
    632 :debug:main Merging existing variants '' into variants
    633 :debug:main new fully merged portvariants:
    634 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXxf86vm
    635 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    636 :debug:main adding the default universal variant
    637 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    638 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    639 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    640 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    641 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    642 :debug:main No need to upgrade! xorg-libXxf86vm 1.1.3_0 >= xorg-libXxf86vm 1.1.3_0
    643 :debug:main epoch: in tree: 0 installed: 0
    644 :debug:main xorg-xf86vidmodeproto 2.3.1_0 exists in the ports tree
    645 :debug:main xorg-xf86vidmodeproto 2.3.1_0  is the latest installed
    646 :debug:main xorg-xf86vidmodeproto 2.3.1_0  is active
    647 :debug:main Merging existing variants '' into variants
    648 :debug:main new fully merged portvariants:
    649 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xf86vidmodeproto
    650 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    651 :debug:main only one arch supported, so not adding the default universal variant
    652 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    653 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    654 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    655 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    656 :debug:main No need to upgrade! xorg-xf86vidmodeproto 2.3.1_0 >= xorg-xf86vidmodeproto 2.3.1_0
    657 :debug:main epoch: in tree: 0 installed: 0
    658 :debug:main freetype 2.5.3_1 exists in the ports tree
    659 :debug:main freetype 2.5.3_1  is the latest installed
    660 :debug:main freetype 2.5.3_1  is active
    661 :debug:main Merging existing variants '' into variants
    662 :debug:main new fully merged portvariants:
    663 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/print/freetype
    664 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    665 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    666 :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    667 :debug:main universal variant already exists, so not adding the default one
    668 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    669 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    670 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    671 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    672 :debug:main No need to upgrade! freetype 2.5.3_1 >= freetype 2.5.3_1
    673 :debug:main epoch: in tree: 0 installed: 0
    674 :debug:main libpng 1.6.13_0 exists in the ports tree
    675 :debug:main libpng 1.6.13_0  is the latest installed
    676 :debug:main libpng 1.6.13_0  is active
    677 :debug:main Merging existing variants '' into variants
    678 :debug:main new fully merged portvariants:
    679 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/graphics/libpng
    680 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    681 :debug:main adding the default universal variant
    682 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    683 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    684 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    685 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    686 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    687 :debug:main No need to upgrade! libpng 1.6.13_0 >= libpng 1.6.13_0
    688 :debug:main epoch: in tree: 0 installed: 0
    689 :debug:main glew 1.11.0_0 exists in the ports tree
    690 :debug:main glew 1.11.0_0  is the latest installed
    691 :debug:main glew 1.11.0_0  is active
    692 :debug:main Merging existing variants '' into variants
    693 :debug:main new fully merged portvariants:
    694 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/graphics/glew
    695 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    696 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    697 :debug:main universal variant already exists, so not adding the default one
    698 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    699 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    700 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    701 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    702 :debug:main No need to upgrade! glew 1.11.0_0 >= glew 1.11.0_0
    703 :debug:main epoch: in tree: 0 installed: 0
    704 :debug:main py27-numpy 1.9.0_0 exists in the ports tree
    705 :debug:main py27-numpy 1.9.0_0  is the latest installed
    706 :debug:main py27-numpy 1.9.0_0  is active
    707 :debug:main Merging existing variants '' into variants
    708 :debug:main new fully merged portvariants:
    709 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-numpy
    710 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    711 :debug:main Re-registering default for build.cmd
    712 :debug:main Re-registering default for destroot.cmd
    713 :debug:main Re-registering default for destroot.destdir
    714 :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
    715 :debug:main Sourcing PortGroup github 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/github-1.0.tcl
    716 :debug:main adding the default universal variant
    717 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    718 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    719 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    720 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    721 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    722 :debug:main No need to upgrade! py27-numpy 1.9.0_0 >= py27-numpy 1.9.0_0
    723 :debug:main epoch: in tree: 0 installed: 0
    724 :debug:main fftw-3 3.3.4_0 exists in the ports tree
    725 :debug:main fftw-3 3.3.4_0 +gcc48+mpich is the latest installed
    726 :debug:main fftw-3 3.3.4_0 +gcc48+mpich is active
    727 :debug:main Merging existing variants '+gcc48+mpich' into variants
    728 :debug:main new fully merged portvariants: mpich + gcc48 +
    729 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/fftw-3
    730 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    731 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    732 :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    733 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
    734 :debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
    735 :debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
    736 :debug:main Sourcing PortGroup mpi 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl
    737 :debug:main compiler clang 600.0.51 not blacklisted because it doesn't match {clang <= 211.10.1}
    738 :debug:main universal variant already exists, so not adding the default one
    739 :debug:main Executing variant gcc48 provides gcc48
    740 :debug:main Executing variant mpich provides mpich
    741 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    742 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    743 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    744 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    745 :debug:main No need to upgrade! fftw-3 3.3.4_0 >= fftw-3 3.3.4_0
    746 :debug:main epoch: in tree: 2 installed: 2
    747 :debug:main libgcc 4.9.1_0 exists in the ports tree
    748 :debug:main libgcc 4.9.1_0  is the latest installed
    749 :debug:main libgcc 4.9.1_0  is active
    750 :debug:main Merging existing variants '' into variants
    751 :debug:main new fully merged portvariants:
    752 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/gcc49
    753 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    754 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
    755 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
    756 :debug:main Sourcing PortGroup conflicts_build 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/conflicts_build-1.0.tcl
    757 :debug:main compiler llvm-gcc-4.2 2336.11.00 not blacklisted because it doesn't match {llvm-gcc-4.2 < 2336.1}
    758 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    759 :debug:main universal variant already exists, so not adding the default one
    760 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    761 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    762 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    763 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    764 :debug:main No need to upgrade! libgcc 4.9.1_0 >= libgcc 4.9.1_0
    765 :debug:main epoch: in tree: 0 installed: 0
    766 :debug:main gmp 6.0.0_1 exists in the ports tree
    767 :debug:main gmp 6.0.0_1  is the latest installed
    768 :debug:main gmp 6.0.0_1  is active
    769 :debug:main Merging existing variants '' into variants
    770 :debug:main new fully merged portvariants:
    771 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gmp
    772 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    773 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    774 :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    775 :debug:main universal variant already exists, so not adding the default one
    776 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    777 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    778 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    779 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    780 :debug:main No need to upgrade! gmp 6.0.0_1 >= gmp 6.0.0_1
    781 :debug:main epoch: in tree: 0 installed: 0
    782 :debug:main mpfr 3.1.2-p10_3 exists in the ports tree
    783 :debug:main mpfr 3.1.2-p10_3  is the latest installed
    784 :debug:main mpfr 3.1.2-p10_3  is active
    785 :debug:main Merging existing variants '' into variants
    786 :debug:main new fully merged portvariants:
    787 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/mpfr
    788 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    789 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    790 :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    791 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
    792 :debug:main compiler clang 600.0.51 not blacklisted because it doesn't match {clang == 211.10.1}
    793 :debug:main universal variant already exists, so not adding the default one
    794 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    795 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    796 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    797 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    798 :debug:main No need to upgrade! mpfr 3.1.2-p10_3 >= mpfr 3.1.2-p10_3
    799 :debug:main epoch: in tree: 0 installed: 0
    800 :debug:main libmpc 1.0.2_0 exists in the ports tree
    801 :debug:main libmpc 1.0.2_0  is the latest installed
    802 :debug:main libmpc 1.0.2_0  is active
    803 :debug:main Merging existing variants '' into variants
    804 :debug:main new fully merged portvariants:
    805 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libmpc
    806 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    807 :debug:main adding the default universal variant
    808 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    809 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    810 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    811 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    812 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    813 :debug:main No need to upgrade! libmpc 1.0.2_0 >= libmpc 1.0.2_0
    814 :debug:main epoch: in tree: 1 installed: 1
    815 :debug:main cloog 0.18.2_0 exists in the ports tree
    816 :debug:main cloog 0.18.2_0  is the latest installed
    817 :debug:main cloog 0.18.2_0  is active
    818 :debug:main Merging existing variants '' into variants
    819 :debug:main new fully merged portvariants:
    820 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cloog
    821 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    822 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    823 :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    824 :debug:main universal variant already exists, so not adding the default one
    825 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    826 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    827 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    828 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    829 :debug:main No need to upgrade! cloog 0.18.2_0 >= cloog 0.18.2_0
    830 :debug:main epoch: in tree: 2 installed: 2
    831 :debug:main isl 0.13_0 exists in the ports tree
    832 :debug:main isl 0.13_0  is the latest installed
    833 :debug:main isl 0.13_0  is active
    834 :debug:main Merging existing variants '' into variants
    835 :debug:main new fully merged portvariants:
    836 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/isl
    837 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    838 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    839 :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    840 :debug:main universal variant already exists, so not adding the default one
    841 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    842 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    843 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    844 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    845 :debug:main No need to upgrade! isl 0.13_0 >= isl 0.13_0
    846 :debug:main epoch: in tree: 1 installed: 1
    847 :debug:main ld64 236.3_1 exists in the ports tree
    848 :debug:main ld64 236.3_1 +llvm35 is the latest installed
    849 :debug:main ld64 236.3_1 +llvm35 is active
    850 :debug:main Merging existing variants '+llvm35' into variants
    851 :debug:main new fully merged portvariants: llvm35 +
    852 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ld64
    853 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    854 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    855 :debug:main universal variant already exists, so not adding the default one
    856 :debug:main Executing variant llvm35 provides llvm35
    857 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    858 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    859 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    860 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    861 :debug:main No need to upgrade! ld64 236.3_1 >= ld64 236.3_1
    862 :debug:main epoch: in tree: 0 installed: 0
    863 :debug:main llvm-3.5 3.5-r216817_0 exists in the ports tree
    864 :debug:main llvm-3.5 3.5-r216817_0 +assertions is the latest installed
    865 :debug:main llvm-3.5 3.5-r216817_0 +assertions is active
    866 :debug:main Merging existing variants '+assertions' into variants
    867 :debug:main new fully merged portvariants: assertions +
    868 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/llvm-3.5
    869 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    870 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
    871 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
    872 :debug:main compiler clang 600.0.51 not blacklisted because it doesn't match {clang < 421}
    873 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    874 :debug:main universal variant already exists, so not adding the default one
    875 :debug:main Executing variant assertions provides assertions
    876 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    877 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    878 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    879 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    880 :debug:main No need to upgrade! llvm-3.5 3.5-r216817_0 >= llvm-3.5 3.5-r216817_0
    881 :debug:main epoch: in tree: 0 installed: 0
    882 :debug:main libffi 3.1_4 exists in the ports tree
    883 :debug:main libffi 3.1_4  is the latest installed
    884 :debug:main libffi 3.1_4  is active
    885 :debug:main Merging existing variants '' into variants
    886 :debug:main new fully merged portvariants:
    887 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libffi
    888 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    889 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    890 :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    891 :debug:main universal variant already exists, so not adding the default one
    892 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    893 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    894 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    895 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    896 :debug:main No need to upgrade! libffi 3.1_4 >= libffi 3.1_4
    897 :debug:main epoch: in tree: 0 installed: 0
    898 :debug:main libcxx 183506_1 exists in the ports tree
    899 :debug:main libcxx 183506_1  is the latest installed
    900 :debug:main libcxx 183506_1  is active
    901 :debug:main Merging existing variants '' into variants
    902 :debug:main new fully merged portvariants:
    903 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/libcxx
    904 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    905 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    906 :debug:main universal variant already exists, so not adding the default one
    907 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    908 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    909 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    910 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    911 :debug:main No need to upgrade! libcxx 183506_1 >= libcxx 183506_1
    912 :debug:main epoch: in tree: 0 installed: 0
    913 :debug:main perl5 5.12.4_0 exists in the ports tree
    914 :debug:main perl5 5.12.4_0 +perl5_16 is the latest installed
    915 :debug:main perl5 5.12.4_0 +perl5_16 is active
    916 :debug:main Merging existing variants '+perl5_16' into variants
    917 :debug:main new fully merged portvariants: perl5_16 +
    918 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/perl5
    919 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    920 :debug:main universal_variant is false, so not adding the default universal variant
    921 :debug:main Executing variant perl5_16 provides perl5_16
    922 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    923 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    924 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    925 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    926 :debug:main No need to upgrade! perl5 5.12.4_0 >= perl5 5.12.4_0
    927 :debug:main epoch: in tree: 0 installed: 0
    928 :debug:main perl5.16 5.16.3_0 exists in the ports tree
    929 :debug:main perl5.16 5.16.3_0  is the latest installed
    930 :debug:main perl5.16 5.16.3_0  is active
    931 :debug:main Merging existing variants '' into variants
    932 :debug:main new fully merged portvariants:
    933 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/perl5.16
    934 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    935 :debug:main adding the default universal variant
    936 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    937 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    938 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    939 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    940 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    941 :debug:main No need to upgrade! perl5.16 5.16.3_0 >= perl5.16 5.16.3_0
    942 :debug:main epoch: in tree: 0 installed: 0
    943 :debug:main gdbm 1.11_0 exists in the ports tree
    944 :debug:main gdbm 1.11_0  is the latest installed
    945 :debug:main gdbm 1.11_0  is active
    946 :debug:main Merging existing variants '' into variants
    947 :debug:main new fully merged portvariants:
    948 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/gdbm
    949 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    950 :debug:main adding the default universal variant
    951 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    952 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    953 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    954 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    955 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    956 :debug:main No need to upgrade! gdbm 1.11_0 >= gdbm 1.11_0
    957 :debug:main epoch: in tree: 0 installed: 0
    958 :debug:main llvm_select 1.0_0 exists in the ports tree
    959 :debug:main llvm_select 1.0_0  is the latest installed
    960 :debug:main llvm_select 1.0_0  is active
    961 :debug:main Merging existing variants '' into variants
    962 :debug:main new fully merged portvariants:
    963 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/llvm_select
    964 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    965 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
    966 :debug:main universal_variant is false, so not adding the default universal variant
    967 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    968 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    969 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    970 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    971 :debug:main No need to upgrade! llvm_select 1.0_0 >= llvm_select 1.0_0
    972 :debug:main epoch: in tree: 0 installed: 0
    973 :debug:main cctools 855_1 exists in the ports tree
    974 :debug:main cctools 855_1 +llvm35 is the latest installed
    975 :debug:main cctools 855_1 +llvm35 is active
    976 :debug:main Merging existing variants '+llvm35' into variants
    977 :debug:main new fully merged portvariants: llvm35 +
    978 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cctools
    979 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    980 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    981 :debug:main universal variant already exists, so not adding the default one
    982 :debug:main Executing variant llvm35 provides llvm35
    983 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    984 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    985 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    986 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    987 :debug:main No need to upgrade! cctools 855_1 >= cctools 855_1
    988 :debug:main epoch: in tree: 0 installed: 0
    989 :debug:main cctools-headers 855_0 exists in the ports tree
    990 :debug:main cctools-headers 855_0  is the latest installed
    991 :debug:main cctools-headers 855_0  is active
    992 :debug:main Merging existing variants '' into variants
    993 :debug:main new fully merged portvariants:
    994 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cctools-headers
    995 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    996 :debug:main universal_variant is false, so not adding the default universal variant
    997 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    998 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    999 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1000 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1001 :debug:main No need to upgrade! cctools-headers 855_0 >= cctools-headers 855_0
    1002 :debug:main epoch: in tree: 0 installed: 0
    1003 :debug:main gcc_select 0.1_8 exists in the ports tree
    1004 :debug:main gcc_select 0.1_8  is the latest installed
    1005 :debug:main gcc_select 0.1_8  is active
    1006 :debug:main Merging existing variants '' into variants
    1007 :debug:main new fully merged portvariants:
    1008 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/gcc_select
    1009 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1010 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
    1011 :debug:main universal_variant is false, so not adding the default universal variant
    1012 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1013 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1014 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1015 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1016 :debug:main No need to upgrade! gcc_select 0.1_8 >= gcc_select 0.1_8
    1017 :debug:main epoch: in tree: 0 installed: 0
    1018 :debug:main mpich-gcc48 3.1.3_0 exists in the ports tree
    1019 :debug:main mpich-gcc48 3.1.3_0 +fortran is the latest installed
    1020 :debug:main mpich-gcc48 3.1.3_0 +fortran is active
    1021 :debug:main Merging existing variants '+fortran' into variants
    1022 :debug:main new fully merged portvariants: fortran +
    1023 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/mpich
    1024 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1025 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
    1026 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
    1027 :debug:main compiler clang 600.0.51 not blacklisted because it doesn't match {clang >= 421.11.66 < 425.0.24}
    1028 :debug:main universal_variant is false, so not adding the default universal variant
    1029 :debug:main Executing variant fortran provides fortran
    1030 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1031 :debug:main Chosen compiler macports-gcc-4.8 is provided by a port, adding dependency
    1032 :debug:main Adding depends_lib port:gcc48
    1033 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1034 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1035 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1036 :debug:main No need to upgrade! mpich-gcc48 3.1.3_0 >= mpich-gcc48 3.1.3_0
    1037 :debug:main epoch: in tree: 2 installed: 2
    1038 :debug:main gcc48 4.8.3_0 exists in the ports tree
    1039 :debug:main gcc48 4.8.3_0  is the latest installed
    1040 :debug:main gcc48 4.8.3_0  is active
    1041 :debug:main Merging existing variants '' into variants
    1042 :debug:main new fully merged portvariants:
    1043 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/gcc48
    1044 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1045 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
    1046 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
    1047 :debug:main Sourcing PortGroup conflicts_build 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/conflicts_build-1.0.tcl
    1048 :debug:main compiler llvm-gcc-4.2 2336.11.00 not blacklisted because it doesn't match {llvm-gcc-4.2 < 2336.1}
    1049 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    1050 :debug:main universal variant already exists, so not adding the default one
    1051 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1052 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1053 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1054 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1055 :debug:main No need to upgrade! gcc48 4.8.3_0 >= gcc48 4.8.3_0
    1056 :debug:main epoch: in tree: 0 installed: 0
    1057 :debug:main mpi_select 0.0_3 exists in the ports tree
    1058 :debug:main mpi_select 0.0_3  is the latest installed
    1059 :debug:main mpi_select 0.0_3  is active
    1060 :debug:main Merging existing variants '' into variants
    1061 :debug:main new fully merged portvariants:
    1062 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/mpi_select
    1063 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1064 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
    1065 :debug:main universal_variant is false, so not adding the default universal variant
    1066 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1067 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1068 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1069 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1070 :debug:main No need to upgrade! mpi_select 0.0_3 >= mpi_select 0.0_3
    1071 :debug:main epoch: in tree: 0 installed: 0
    1072 :debug:main mpi-doc 3.1.3_0 exists in the ports tree
    1073 :debug:main mpi-doc 3.1.3_0  is the latest installed
    1074 :debug:main mpi-doc 3.1.3_0  is active
    1075 :debug:main Merging existing variants '' into variants
    1076 :debug:main new fully merged portvariants:
    1077 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/mpi-doc
    1078 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1079 :debug:main universal_variant is false, so not adding the default universal variant
    1080 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1081 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1082 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1083 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1084 :debug:main No need to upgrade! mpi-doc 3.1.3_0 >= mpi-doc 3.1.3_0
    1085 :debug:main epoch: in tree: 0 installed: 0
    1086 :debug:main py27-nose 1.3.1_0 exists in the ports tree
    1087 :debug:main py27-nose 1.3.1_0  is the latest installed
    1088 :debug:main py27-nose 1.3.1_0  is active
    1089 :debug:main Merging existing variants '' into variants
    1090 :debug:main new fully merged portvariants:
    1091 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-nose
    1092 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1093 :debug:main Re-registering default for build.cmd
    1094 :debug:main Re-registering default for destroot.cmd
    1095 :debug:main Re-registering default for destroot.destdir
    1096 :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
    1097 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
    1098 :debug:main only one arch supported, so not adding the default universal variant
    1099 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1100 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1101 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1102 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1103 :debug:main No need to upgrade! py27-nose 1.3.1_0 >= py27-nose 1.3.1_0
    1104 :debug:main epoch: in tree: 0 installed: 0
    1105 :debug:main py27-setuptools 6.1_0 exists in the ports tree
    1106 :debug:main py27-setuptools 6.1_0  is the latest installed
    1107 :debug:main py27-setuptools 6.1_0  is active
    1108 :debug:main Merging existing variants '' into variants
    1109 :debug:main new fully merged portvariants:
    1110 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-setuptools
    1111 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1112 :debug:main Re-registering default for build.cmd
    1113 :debug:main Re-registering default for destroot.cmd
    1114 :debug:main Re-registering default for destroot.destdir
    1115 :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
    1116 :debug:main only one arch supported, so not adding the default universal variant
    1117 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1118 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1119 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1120 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1121 :debug:main No need to upgrade! py27-setuptools 6.1_0 >= py27-setuptools 6.1_0
    1122 :debug:main epoch: in tree: 0 installed: 0
    1123 :debug:main nosetests_select 0.1_0 exists in the ports tree
    1124 :debug:main nosetests_select 0.1_0  is the latest installed
    1125 :debug:main nosetests_select 0.1_0  is active
    1126 :debug:main Merging existing variants '' into variants
    1127 :debug:main new fully merged portvariants:
    1128 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/nosetests_select
    1129 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1130 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
    1131 :debug:main universal_variant is false, so not adding the default universal variant
    1132 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1133 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1134 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1135 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1136 :debug:main No need to upgrade! nosetests_select 0.1_0 >= nosetests_select 0.1_0
    1137 :debug:main epoch: in tree: 0 installed: 0
    1138 :debug:main py27-cython 0.21.1_0 exists in the ports tree
    1139 :debug:main py27-cython 0.21.1_0  is the latest installed
    1140 :debug:main py27-cython 0.21.1_0  is active
    1141 :debug:main Merging existing variants '' into variants
    1142 :debug:main new fully merged portvariants:
    1143 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-cython
    1144 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1145 :debug:main Re-registering default for build.cmd
    1146 :debug:main Re-registering default for destroot.cmd
    1147 :debug:main Re-registering default for destroot.destdir
    1148 :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
    1149 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
    1150 :debug:main adding the default universal variant
    1151 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    1152 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1153 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1154 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1155 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1156 :debug:main No need to upgrade! py27-cython 0.21.1_0 >= py27-cython 0.21.1_0
    1157 :debug:main epoch: in tree: 0 installed: 0
    1158 :debug:main cython_select 0.1_0 exists in the ports tree
    1159 :debug:main cython_select 0.1_0  is the latest installed
    1160 :debug:main cython_select 0.1_0  is active
    1161 :debug:main Merging existing variants '' into variants
    1162 :debug:main new fully merged portvariants:
    1163 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/cython_select
    1164 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1165 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
    1166 :debug:main universal_variant is false, so not adding the default universal variant
    1167 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1168 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1169 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1170 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1171 :debug:main No need to upgrade! cython_select 0.1_0 >= cython_select 0.1_0
    1172 :debug:main epoch: in tree: 0 installed: 0
    1173 :debug:main py27-pmw 1.3.3a_0 exists in the ports tree
    1174 :debug:main py27-pmw 1.3.3a_0  is the latest installed
    1175 :debug:main py27-pmw 1.3.3a_0  is active
    1176 :debug:main Merging existing variants '' into variants
    1177 :debug:main new fully merged portvariants:
    1178 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-pmw
    1179 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1180 :debug:main Re-registering default for build.cmd
    1181 :debug:main Re-registering default for destroot.cmd
    1182 :debug:main Re-registering default for destroot.destdir
    1183 :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
    1184 :debug:main only one arch supported, so not adding the default universal variant
    1185 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1186 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1187 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1188 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1189 :debug:main No need to upgrade! py27-pmw 1.3.3a_0 >= py27-pmw 1.3.3a_0
    1190 :debug:main epoch: in tree: 0 installed: 0
    1191 :debug:main py27-tkinter 2.7.8_2 exists in the ports tree
    1192 :debug:main py27-tkinter 2.7.8_2  is the latest installed
    1193 :debug:main py27-tkinter 2.7.8_2  is active
    1194 :debug:main Merging existing variants '' into variants
    1195 :debug:main new fully merged portvariants:
    1196 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-tkinter
    1197 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1198 :debug:main Re-registering default for build.cmd
    1199 :debug:main Re-registering default for destroot.cmd
    1200 :debug:main Re-registering default for destroot.destdir
    1201 :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
    1202 :debug:main adding the default universal variant
    1203 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    1204 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1205 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1206 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1207 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1208 :debug:main No need to upgrade! py27-tkinter 2.7.8_2 >= py27-tkinter 2.7.8_2
    1209 :debug:main epoch: in tree: 0 installed: 0
    1210 :debug:main tk 8.6.1_1 exists in the ports tree
    1211 :debug:main tk 8.6.1_1  is the latest installed
    1212 :debug:main tk 8.6.1_1  is active
    1213 :debug:main Merging existing variants '-quartz' into variants
    1214 :debug:main new fully merged portvariants: quartz -
    1215 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/tk
    1216 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1217 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    1218 :debug:main adding the default universal variant
    1219 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1220 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1221 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1222 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1223 :debug:main No need to upgrade! tk 8.6.1_1 >= tk 8.6.1_1
    1224 :debug:main epoch: in tree: 0 installed: 0
    1225 :debug:main tcl 8.6.1_0 exists in the ports tree
    1226 :debug:main tcl 8.6.1_0 +threads is the latest installed
    1227 :debug:main tcl 8.6.1_0 +threads is active
    1228 :debug:main Merging existing variants '+threads-corefoundation' into variants
    1229 :debug:main new fully merged portvariants: corefoundation - threads +
    1230 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/tcl
    1231 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1232 :debug:main adding the default universal variant
    1233 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    1234 :debug:main Executing variant threads provides threads
    1235 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1236 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1237 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1238 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1239 :debug:main No need to upgrade! tcl 8.6.1_0 >= tcl 8.6.1_0
    1240 :debug:main epoch: in tree: 0 installed: 0
    1241 :debug:main Xft2 2.3.2_0 exists in the ports tree
    1242 :debug:main Xft2 2.3.2_0  is the latest installed
    1243 :debug:main Xft2 2.3.2_0  is active
    1244 :debug:main Merging existing variants '' into variants
    1245 :debug:main new fully merged portvariants:
    1246 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/Xft2
    1247 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1248 :debug:main adding the default universal variant
    1249 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    1250 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1251 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1252 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1253 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1254 :debug:main No need to upgrade! Xft2 2.3.2_0 >= Xft2 2.3.2_0
    1255 :debug:main epoch: in tree: 0 installed: 0
    1256 :debug:main fontconfig 2.11.1_0 exists in the ports tree
    1257 :debug:main fontconfig 2.11.1_0  is the latest installed
    1258 :debug:main fontconfig 2.11.1_0  is active
    1259 :debug:main Merging existing variants '' into variants
    1260 :debug:main new fully merged portvariants:
    1261 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/graphics/fontconfig
    1262 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1263 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    1264 :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
    1265 :debug:main universal variant already exists, so not adding the default one
    1266 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1267 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1268 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1269 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1270 :debug:main No need to upgrade! fontconfig 2.11.1_0 >= fontconfig 2.11.1_0
    1271 :debug:main epoch: in tree: 0 installed: 0
    1272 :debug:main xorg-libXScrnSaver 1.2.2_0 exists in the ports tree
    1273 :debug:main xorg-libXScrnSaver 1.2.2_0  is the latest installed
    1274 :debug:main xorg-libXScrnSaver 1.2.2_0  is active
    1275 :debug:main Merging existing variants '' into variants
    1276 :debug:main new fully merged portvariants:
    1277 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXScrnSaver
    1278 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1279 :debug:main adding the default universal variant
    1280 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    1281 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1282 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1283 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1284 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1285 :debug:main No need to upgrade! xorg-libXScrnSaver 1.2.2_0 >= xorg-libXScrnSaver 1.2.2_0
    1286 :debug:main epoch: in tree: 0 installed: 0
    1287 :debug:main xorg-scrnsaverproto 1.2.2_0 exists in the ports tree
    1288 :debug:main xorg-scrnsaverproto 1.2.2_0  is the latest installed
    1289 :debug:main xorg-scrnsaverproto 1.2.2_0  is active
    1290 :debug:main Merging existing variants '' into variants
    1291 :debug:main new fully merged portvariants:
    1292 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-scrnsaverproto
    1293 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1294 :debug:main only one arch supported, so not adding the default universal variant
    1295 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1296 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1297 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1298 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1299 :debug:main No need to upgrade! xorg-scrnsaverproto 1.2.2_0 >= xorg-scrnsaverproto 1.2.2_0
    1300 :debug:main epoch: in tree: 0 installed: 0
    1301 :debug:main py27-scipy 0.14.0_0 exists in the ports tree
    1302 :debug:main py27-scipy 0.14.0_0 +gcc48 is the latest installed
    1303 :debug:main py27-scipy 0.14.0_0 +gcc48 is active
    1304 :debug:main Merging existing variants '+gcc48' into variants
    1305 :debug:main new fully merged portvariants: gcc48 +
    1306 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-scipy
    1307 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1308 :debug:main Re-registering default for build.cmd
    1309 :debug:main Re-registering default for destroot.cmd
    1310 :debug:main Re-registering default for destroot.destdir
    1311 :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
    1312 :debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
    1313 :debug:main universal_variant is false, so not adding the default universal variant
    1314 :debug:main Executing variant gcc48 provides gcc48
    1315 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1316 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1317 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1318 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1319 :debug:main No need to upgrade! py27-scipy 0.14.0_0 >= py27-scipy 0.14.0_0
    1320 :debug:main epoch: in tree: 20120107 installed: 20120107
    1321 :debug:main SuiteSparse 4.2.1_3 exists in the ports tree
    1322 :debug:main SuiteSparse 4.2.1_3  is the latest installed
    1323 :debug:main SuiteSparse 4.2.1_3  is active
    1324 :debug:main Merging existing variants '' into variants
    1325 :debug:main new fully merged portvariants:
    1326 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/SuiteSparse
    1327 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1328 :debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
    1329 :debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
    1330 :debug:main adding the default universal variant
    1331 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    1332 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1333 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1334 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1335 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1336 :debug:main No need to upgrade! SuiteSparse 4.2.1_3 >= SuiteSparse 4.2.1_3
    1337 :debug:main epoch: in tree: 0 installed: 0
    1338 :debug:main swig-python 3.0.2_0 exists in the ports tree
    1339 :debug:main swig-python 3.0.2_0  is the latest installed
    1340 :debug:main swig-python 3.0.2_0  is active
    1341 :debug:main Merging existing variants '' into variants
    1342 :debug:main new fully merged portvariants:
    1343 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/swig
    1344 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1345 :debug:main adding the default universal variant
    1346 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    1347 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1348 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1349 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1350 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1351 :debug:main No need to upgrade! swig-python 3.0.2_0 >= swig-python 3.0.2_0
    1352 :debug:main epoch: in tree: 0 installed: 0
    1353 :debug:main swig 3.0.2_0 exists in the ports tree
    1354 :debug:main swig 3.0.2_0  is the latest installed
    1355 :debug:main swig 3.0.2_0  is active
    1356 :debug:main Merging existing variants '' into variants
    1357 :debug:main new fully merged portvariants:
    1358 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/swig
    1359 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1360 :debug:main adding the default universal variant
    1361 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    1362 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1363 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1364 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1365 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1366 :debug:main No need to upgrade! swig 3.0.2_0 >= swig 3.0.2_0
    1367 :debug:main epoch: in tree: 0 installed: 0
    1368 :debug:main pcre 8.35_0 exists in the ports tree
    1369 :debug:main pcre 8.35_0  is the latest installed
    1370 :debug:main pcre 8.35_0  is active
    1371 :debug:main Merging existing variants '' into variants
    1372 :debug:main new fully merged portvariants:
    1373 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/pcre
    1374 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1375 :debug:main adding the default universal variant
    1376 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    1377 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1378 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1379 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1380 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1381 :debug:main No need to upgrade! pcre 8.35_0 >= pcre 8.35_0
    1382 :debug:main epoch: in tree: 0 installed: 0
    1383 :debug:main xdpyinfo 1.3.1_0 exists in the ports tree
    1384 :debug:main xdpyinfo 1.3.1_0  is the latest installed
    1385 :debug:main xdpyinfo 1.3.1_0  is active
    1386 :debug:main Merging existing variants '' into variants
    1387 :debug:main new fully merged portvariants:
    1388 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xdpyinfo
    1389 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1390 :debug:main adding the default universal variant
    1391 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    1392 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1393 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1394 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1395 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1396 :debug:main No need to upgrade! xdpyinfo 1.3.1_0 >= xdpyinfo 1.3.1_0
    1397 :debug:main epoch: in tree: 0 installed: 0
    1398 :debug:main xorg-libXinerama 1.1.3_0 exists in the ports tree
    1399 :debug:main xorg-libXinerama 1.1.3_0  is the latest installed
    1400 :debug:main xorg-libXinerama 1.1.3_0  is active
    1401 :debug:main Merging existing variants '' into variants
    1402 :debug:main new fully merged portvariants:
    1403 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXinerama
    1404 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1405 :debug:main adding the default universal variant
    1406 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    1407 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1408 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1409 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1410 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1411 :debug:main No need to upgrade! xorg-libXinerama 1.1.3_0 >= xorg-libXinerama 1.1.3_0
    1412 :debug:main epoch: in tree: 0 installed: 0
    1413 :debug:main xorg-xineramaproto 1.2.1_0 exists in the ports tree
    1414 :debug:main xorg-xineramaproto 1.2.1_0  is the latest installed
    1415 :debug:main xorg-xineramaproto 1.2.1_0  is active
    1416 :debug:main Merging existing variants '' into variants
    1417 :debug:main new fully merged portvariants:
    1418 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xineramaproto
    1419 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1420 :debug:main only one arch supported, so not adding the default universal variant
    1421 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1422 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1423 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1424 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1425 :debug:main No need to upgrade! xorg-xineramaproto 1.2.1_0 >= xorg-xineramaproto 1.2.1_0
    1426 :debug:main epoch: in tree: 0 installed: 0
    1427 :debug:main xorg-libXtst 1.2.2_0 exists in the ports tree
    1428 :debug:main xorg-libXtst 1.2.2_0  is the latest installed
    1429 :debug:main xorg-libXtst 1.2.2_0  is active
    1430 :debug:main Merging existing variants '' into variants
    1431 :debug:main new fully merged portvariants:
    1432 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXtst
    1433 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1434 :debug:main adding the default universal variant
    1435 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    1436 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1437 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1438 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1439 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1440 :debug:main No need to upgrade! xorg-libXtst 1.2.2_0 >= xorg-libXtst 1.2.2_0
    1441 :debug:main epoch: in tree: 0 installed: 0
    1442 :debug:main xorg-recordproto 1.14.2_0 exists in the ports tree
    1443 :debug:main xorg-recordproto 1.14.2_0  is the latest installed
    1444 :debug:main xorg-recordproto 1.14.2_0  is active
    1445 :debug:main Merging existing variants '' into variants
    1446 :debug:main new fully merged portvariants:
    1447 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-recordproto
    1448 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1449 :debug:main only one arch supported, so not adding the default universal variant
    1450 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1451 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1452 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1453 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1454 :debug:main No need to upgrade! xorg-recordproto 1.14.2_0 >= xorg-recordproto 1.14.2_0
    1455 :debug:main epoch: in tree: 0 installed: 0
    1456 :debug:main xorg-libdmx 1.1.3_0 exists in the ports tree
    1457 :debug:main xorg-libdmx 1.1.3_0  is the latest installed
    1458 :debug:main xorg-libdmx 1.1.3_0  is active
    1459 :debug:main Merging existing variants '' into variants
    1460 :debug:main new fully merged portvariants:
    1461 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libdmx
    1462 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1463 :debug:main adding the default universal variant
    1464 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
    1465 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1466 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1467 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1468 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1469 :debug:main No need to upgrade! xorg-libdmx 1.1.3_0 >= xorg-libdmx 1.1.3_0
    1470 :debug:main epoch: in tree: 0 installed: 0
    1471 :debug:main xorg-dmxproto 2.3.1_0 exists in the ports tree
    1472 :debug:main xorg-dmxproto 2.3.1_0  is the latest installed
    1473 :debug:main xorg-dmxproto 2.3.1_0  is active
    1474 :debug:main Merging existing variants '' into variants
    1475 :debug:main new fully merged portvariants:
    1476 :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-dmxproto
    1477 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
    1478 :debug:main only one arch supported, so not adding the default universal variant
    1479 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies
    1480 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
    1481 :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
    1482 :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
    1483 :debug:main No need to upgrade! xorg-dmxproto 2.3.1_0 >= xorg-dmxproto 2.3.1_0
    1484 :msg:main --->  Computing dependencies for pymol:info:main .:debug:main pymol has no conflicts
    1485 :debug:main Found Dependency: path: /usr/bin filename: svn regex: ^svn$
    1486 :debug:main Searching for dependency: subversion
    1487 :debug:main Didn't find receipt, going to depspec regex for: subversion
    1488 :debug:main Found Dependency: path: /usr/bin filename: svn regex: ^svn$
    1489 :debug:main Searching for dependency: python27
    1490 :debug:main Found Dependency: receipt exists for python27
    1491 :debug:main Searching for dependency: freeglut
    1492 :debug:main Found Dependency: receipt exists for freeglut
    1493 :debug:main Searching for dependency: freetype
    1494 :debug:main Found Dependency: receipt exists for freetype
    1495 :debug:main Searching for dependency: glew
    1496 :debug:main Found Dependency: receipt exists for glew
    1497 :debug:main Searching for dependency: libpng
    1498 :debug:main Found Dependency: receipt exists for libpng
    1499 :debug:main Searching for dependency: mesa
    1500 :debug:main Found Dependency: receipt exists for mesa
    1501 :debug:main Searching for dependency: py27-numpy
    1502 :debug:main Found Dependency: receipt exists for py27-numpy
    1503 :debug:main Searching for dependency: py27-pmw
    1504 :debug:main Found Dependency: receipt exists for py27-pmw
    1505 :debug:main Searching for dependency: py27-scipy
    1506 :debug:main Found Dependency: receipt exists for py27-scipy
    1507 :debug:main Searching for dependency: py27-tkinter
    1508 :debug:main Found Dependency: receipt exists for py27-tkinter
    1509 :debug:main Searching for dependency: xdpyinfo
    1510 :debug:main Found Dependency: receipt exists for xdpyinfo
    1511 :msg:main
    1512 :debug:main Executing org.macports.main (pymol)
    1513 :debug:main changing euid/egid - current euid: 0 - current egid: 0
    1514 :debug:main egid changed to: 501
    1515 :debug:main euid changed to: 502
    1516 :debug:archivefetch archivefetch phase started at Sun Oct 19 16:54:37 AEDT 2014
    1517 :msg:archivefetch --->  Fetching archive for pymol
    1518 :debug:archivefetch Executing proc-pre-org.macports.archivefetch-archivefetch-0
    1519 :debug:archivefetch Active variants check for archivefetch-type install considers depends_lib depends_run: python27 freeglut freetype glew libpng mesa py27-numpy py27-pmw py27-scipy py27-tkinter xdpyinfo
    1520 :debug:archivefetch Ignoring active_variants requirement for tcl because archivefetch-type install only considers depends_lib depends_run and those do not contain tcl
    1521 :debug:archivefetch Ignoring active_variants requirement for tk because archivefetch-type install only considers depends_lib depends_run and those do not contain tk
    1522 :debug:archivefetch Executing org.macports.archivefetch (pymol)
    1523 :debug:archivefetch euid/egid changed to: 0/0
    1524 :debug:archivefetch chowned /opt/local/var/macports/incoming to macports
    1525 :debug:archivefetch euid/egid changed to: 502/501
    1526 :info:archivefetch --->  pymol-1.7.1.1_1.darwin_13.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
    1527 :msg:archivefetch --->  Attempting to fetch pymol-1.7.1.1_1.darwin_13.x86_64.tbz2 from http://packages.macports.org/pymol
    1528 :debug:archivefetch Fetching archive failed:: The requested URL returned error: 404 Not Found
    1529 :msg:archivefetch --->  Attempting to fetch pymol-1.7.1.1_1.darwin_13.x86_64.tbz2 from http://jog.id.packages.macports.org/macports/packages/pymol
    1530 :debug:archivefetch Fetching archive failed:: The requested URL returned error: 404 Not Found
    1531 :msg:archivefetch --->  Attempting to fetch pymol-1.7.1.1_1.darwin_13.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/pymol
    1532 :debug:archivefetch Fetching archive failed:: The requested URL returned error: 404 Not Found
    1533 :debug:archivefetch Privilege de-escalation not attempted as not running as root.
    1534 :debug:fetch fetch phase started at Sun Oct 19 16:54:39 AEDT 2014
    1535 :notice:fetch --->  Fetching distfiles for pymol
    1536 :debug:fetch Can't run fetch on this port without elevated privileges. Escalating privileges back to root.
    1537 :debug:fetch euid changed to: 0. egid changed to: 0.
    1538 :debug:fetch changing euid/egid - current euid: 0 - current egid: 0
    1539 :debug:fetch egid changed to: 501
    1540 :debug:fetch euid changed to: 502
    1541 :debug:fetch Executing org.macports.fetch (pymol)
    1542 :debug:fetch Environment:
    1543 CC_PRINT_OPTIONS='YES'
    1544 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
    1545 CPATH='/opt/local/include'
    1546 LIBRARY_PATH='/opt/local/lib'
    1547 MACOSX_DEPLOYMENT_TARGET='10.9'
    1548 :debug:fetch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work" && /usr/bin/svn --non-interactive --trust-server-cert export https://svn.code.sf.net/p/pymol/code/trunk/pymol@4074'
    1549 :debug:fetch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work" && /usr/bin/svn --non-interactive --trust-server-cert export https://svn.code.sf.net/p/pymol/code/trunk/pymol@4074 2>&1
    1550 :info:fetch A    pymol
    1551 :info:fetch A    pymol/test
    1552 :info:fetch A    pymol/test/headerTest.py
    1553 :info:fetch A    pymol/test/show
    1554 :info:fetch A    pymol/test/cyg
    1555 :info:fetch A    pymol/test/trim.py
    1556 :info:fetch A    pymol/test/run
    1557 :info:fetch A    pymol/test/win.py
    1558 :info:fetch A    pymol/test/inp
    1559 :info:fetch A    pymol/test/inp/B08.py
    1560 :info:fetch A    pymol/test/inp/C0200feedback.pml
    1561 :info:fetch A    pymol/test/inp/C0300session.pml
    1562 :info:fetch A    pymol/test/inp/M0010load.pml
    1563 :info:fetch A    pymol/test/inp/C0201extend.pml
    1564 :info:fetch A    pymol/test/inp/M0025view.pml
    1565 :info:fetch A    pymol/test/inp/C0740multipdb.pml
    1566 :info:fetch A    pymol/test/inp/C0050multi.pml
    1567 :info:fetch A    pymol/test/inp/L0010ccp4read.pml
    1568 :info:fetch A    pymol/test/inp/C1060controlling.py
    1569 :info:fetch A    pymol/test/inp/T02.py
    1570 :info:fetch A    pymol/test/inp/M0001new.pml
    1571 :info:fetch A    pymol/test/inp/C2000returns.py
    1572 :info:fetch A    pymol/test/inp/M0053session.pml
    1573 :info:fetch A    pymol/test/inp/C0170scene.pml
    1574 :info:fetch A    pymol/test/inp/C1020querying.pml
    1575 :info:fetch A    pymol/test/inp/M0020multi.pml
    1576 :info:fetch A    pymol/test/inp/C0060delete.pml
    1577 :info:fetch A    pymol/test/inp/C0105names.pml
    1578 :info:fetch A    pymol/test/inp/C1300extras.pml
    1579 :info:fetch A    pymol/test/inp/C0080create.pml
    1580 :info:fetch A    pymol/test/inp/C0150alter.pml
    1581 :info:fetch A    pymol/test/inp/C0800matrices.pml
    1582 :info:fetch A    pymol/test/inp/L0100isomisc.pml
    1583 :info:fetch A    pymol/test/inp/C0100select.pml
    1584 :info:fetch A    pymol/test/inp/B03.py
    1585 :info:fetch A    pymol/test/inp/C0600util.pml
    1586 :info:fetch A    pymol/test/inp/C1035wildcards.pml
    1587 :info:fetch A    pymol/test/inp/B07.py
    1588 :info:fetch A    pymol/test/inp/C0180embed.pml
    1589 :info:fetch A    pymol/test/inp/C1200matrix_maps.pml
    1590 :info:fetch A    pymol/test/inp/C0030pkl.pml
    1591 :info:fetch A    pymol/test/inp/T01.py
    1592 :info:fetch A    pymol/test/inp/C0021pdbstr.pml
    1593 :info:fetch A    pymol/test/inp/M0052session.pml
    1594 :info:fetch A    pymol/test/inp/L0040isomesh2.pml
    1595 :info:fetch A    pymol/test/inp/M0021multi.pml
    1596 :info:fetch A    pymol/test/inp/C0020pdb.pml
    1597 :info:fetch A    pymol/test/inp/L0200electro.pml
    1598 :info:fetch A    pymol/test/inp/C0550pseudo.pml
    1599 :info:fetch A    pymol/test/inp/C1090coulomb.pml
    1600 :info:fetch A    pymol/test/inp/L0020xplorread.pml
    1601 :info:fetch A    pymol/test/inp/B02.py
    1602 :info:fetch A    pymol/test/inp/M0041do.pml
    1603 :info:fetch A    pymol/test/inp/C1030selecting.pml
    1604 :info:fetch A    pymol/test/inp/C0027mol2.pml
    1605 :info:fetch A    pymol/test/inp/C0026sdf.pml
    1606 :info:fetch A    pymol/test/inp/B06.py
    1607 :info:fetch A    pymol/test/inp/C0181embed.pml
    1608 :info:fetch A    pymol/test/inp/C0160get.pml
    1609 :info:fetch A    pymol/test/inp/C1080isomore.pml
    1610 :info:fetch A    pymol/test/inp/C1070exporting.pml
    1611 :info:fetch A    pymol/test/inp/C1010helping.pml
    1612 :info:fetch A    pymol/test/inp/C0025mol.pml
    1613 :info:fetch A    pymol/test/inp/C0500misc.pml
    1614 :info:fetch A    pymol/test/inp/U01.pml
    1615 :info:fetch A    pymol/test/inp/C0140iterate.pml
    1616 :info:fetch A    pymol/test/inp/M0051session.pml
    1617 :info:fetch A    pymol/test/inp/T04.py
    1618 :info:fetch A    pymol/test/inp/C1100do.py
    1619 :info:fetch A    pymol/test/inp/C1050fitting.py
    1620 :info:fetch A    pymol/test/inp/C0700odd.pml
    1621 :info:fetch A    pymol/test/inp/C1095slice.pml
    1622 :info:fetch A    pymol/test/inp/B01.py
    1623 :info:fetch A    pymol/test/inp/B11.py
    1624 :info:fetch A    pymol/test/inp/C0106order.pml
    1625 :info:fetch A    pymol/test/inp/C0001quit.pml
    1626 :info:fetch A    pymol/test/inp/B05.py
    1627 :info:fetch A    pymol/test/inp/B09.py
    1628 :info:fetch A    pymol/test/inp/C1040editing.pml
    1629 :info:fetch A    pymol/test/inp/C0202help_python.pml
    1630 :info:fetch A    pymol/test/inp/C0070rep.pml
    1631 :info:fetch A    pymol/test/inp/M0050session.pml
    1632 :info:fetch A    pymol/test/inp/T03.py
    1633 :info:fetch A    pymol/test/inp/C0010hello.pml
    1634 :info:fetch A    pymol/test/inp/C1000viewing.pml
    1635 :info:fetch A    pymol/test/inp/M0002start.pml
    1636 :info:fetch A    pymol/test/inp/M0030scene.pml
    1637 :info:fetch A    pymol/test/inp/C1110matrix_mode.pml
    1638 :info:fetch A    pymol/test/inp/B10.py
    1639 :info:fetch A    pymol/test/inp/M0040do.pml
    1640 :info:fetch A    pymol/test/inp/B04.py
    1641 :info:fetch A    pymol/test/inp/L0030isomesh.pml
    1642 :info:fetch A    pymol/test/dat
    1643 :info:fetch A    pymol/test/dat/small03.mol2
    1644 :info:fetch A    pymol/test/dat/helix_amber.pdb
    1645 :info:fetch A    pymol/test/dat/water.pdb
    1646 :info:fetch A    pymol/test/dat/tiny.pdb
    1647 :info:fetch A    pymol/test/dat/3al1.r3d
    1648 :info:fetch A    pymol/test/dat/il2.pdb
    1649 :info:fetch A    pymol/test/dat/pept.pkl
    1650 :info:fetch A    pymol/test/dat/small01.mol
    1651 :info:fetch A    pymol/test/dat/pept.r3d
    1652 :info:fetch A    pymol/test/dat/ligs3d.sdf
    1653 :info:fetch A    pymol/test/dat/3al1.pdb
    1654 :info:fetch A    pymol/test/dat/names.pdb
    1655 :info:fetch A    pymol/test/dat/embed01.p1m
    1656 :info:fetch A    pymol/test/dat/1tii.pdb
    1657 :info:fetch A    pymol/test/dat/embed02.p1m
    1658 :info:fetch A    pymol/test/dat/odd01.pdb
    1659 :info:fetch A    pymol/test/dat/embed03.p1m
    1660 :info:fetch A    pymol/test/dat/pept.pdb
    1661 :info:fetch A    pymol/test/dat/odd02.pdb
    1662 :info:fetch A    pymol/test/dat/embed04.p1m
    1663 :info:fetch A    pymol/test/dat/embed05.p1m
    1664 :info:fetch A    pymol/test/dat/embed06.p1m
    1665 :info:fetch A    pymol/test/dat/small02.pdb
    1666 :info:fetch A    pymol/test/ref
    1667 :info:fetch A    pymol/test/ref/C0025mol.log
    1668 :info:fetch A    pymol/test/ref/C0500misc.log
    1669 :info:fetch A    pymol/test/ref/C0700odd.1.pdb
    1670 :info:fetch A    pymol/test/ref/C0700odd.2.pdb
    1671 :info:fetch A    pymol/test/ref/U01.log
    1672 :info:fetch A    pymol/test/ref/C0140iterate.log
    1673 :info:fetch A    pymol/test/ref/C0700odd.3.pdb
    1674 :info:fetch A    pymol/test/ref/M0051session.log
    1675 :info:fetch A    pymol/test/ref/C0700odd.4.pdb
    1676 :info:fetch A    pymol/test/ref/C2000returns.log
    1677 :info:fetch A    pymol/test/ref/C0700odd.5.pdb
    1678 :info:fetch A    pymol/test/ref/C0700odd.6.pdb
    1679 :info:fetch A    pymol/test/ref/C0700odd.7.pdb
    1680 :info:fetch A    pymol/test/ref/C0700odd.8.pdb
    1681 :info:fetch A    pymol/test/ref/C0700odd.9.pdb
    1682 :info:fetch A    pymol/test/ref/C1050fitting.log
    1683 :info:fetch A    pymol/test/ref/C0700odd.log
    1684 :info:fetch A    pymol/test/ref/C1095slice.log
    1685 :info:fetch A    pymol/test/ref/C0700odd.A.pdb
    1686 :info:fetch A    pymol/test/ref/C0700odd.B.pdb
    1687 :info:fetch A    pymol/test/ref/C0700odd.C.pdb
    1688 :info:fetch A    pymol/test/ref/C0106order.log
    1689 :info:fetch A    pymol/test/ref/C0700odd.D.pdb
    1690 :info:fetch A    pymol/test/ref/C0001quit.log
    1691 :info:fetch A    pymol/test/ref/C0700odd.E.pdb
    1692 :info:fetch A    pymol/test/ref/C0700odd.F.pdb
    1693 :info:fetch A    pymol/test/ref/C1040editing.log
    1694 :info:fetch A    pymol/test/ref/C0070rep.log
    1695 :info:fetch A    pymol/test/ref/C0202help_python.log
    1696 :info:fetch A    pymol/test/ref/C1060controlling.log
    1697 :info:fetch A    pymol/test/ref/M0050session.log
    1698 :info:fetch A    pymol/test/ref/C0010hello.log
    1699 :info:fetch A    pymol/test/ref/M0002start.log
    1700 :info:fetch A    pymol/test/ref/C1000viewing.log
    1701 :info:fetch A    pymol/test/ref/M0030scene.log
    1702 :info:fetch A    pymol/test/ref/C1110matrix_mode.log
    1703 :info:fetch A    pymol/test/ref/M0040do.log
    1704 :info:fetch A    pymol/test/ref/L0030isomesh.log
    1705 :info:fetch A    pymol/test/ref/C0300session.log
    1706 :info:fetch A    pymol/test/ref/C0200feedback.log
    1707 :info:fetch A    pymol/test/ref/M0010load.log
    1708 :info:fetch A    pymol/test/ref/C0201extend.log
    1709 :info:fetch A    pymol/test/ref/M0025view.log
    1710 :info:fetch A    pymol/test/ref/C0740multipdb.log
    1711 :info:fetch A    pymol/test/ref/C0080create.1.pdb
    1712 :info:fetch A    pymol/test/ref/L0010ccp4read.log
    1713 :info:fetch A    pymol/test/ref/C0050multi.log
    1714 :info:fetch A    pymol/test/ref/C0080create.2.pdb
    1715 :info:fetch A    pymol/test/ref/C0150alter.1.pdb
    1716 :info:fetch A    pymol/test/ref/T01.log
    1717 :info:fetch A    pymol/test/ref/M0001new.log
    1718 :info:fetch A    pymol/test/ref/C1100do.log
    1719 :info:fetch A    pymol/test/ref/C0700.odd.G.pdb
    1720 :info:fetch A    pymol/test/ref/M0053session.log
    1721 :info:fetch A    pymol/test/ref/C0170scene.log
    1722 :info:fetch A    pymol/test/ref/C0700.odd.H.pdb
    1723 :info:fetch A    pymol/test/ref/M0020multi.log
    1724 :info:fetch A    pymol/test/ref/C1020querying.log
    1725 :info:fetch A    pymol/test/ref/C0060delete.log
    1726 :info:fetch A    pymol/test/ref/C0105names.log
    1727 :info:fetch A    pymol/test/ref/C1300extras.log
    1728 :info:fetch A    pymol/test/ref/C0080create.log
    1729 :info:fetch A    pymol/test/ref/C0150alter.log
    1730 :info:fetch A    pymol/test/ref/C0800matrices.log
    1731 :info:fetch A    pymol/test/ref/C0100select.log
    1732 :info:fetch A    pymol/test/ref/L0100isomisc.log
    1733 :info:fetch A    pymol/test/ref/C0600util.log
    1734 :info:fetch A    pymol/test/ref/C1035wildcards.log
    1735 :info:fetch A    pymol/test/ref/C0180embed.log
    1736 :info:fetch A    pymol/test/ref/C1200matrix_maps.log
    1737 :info:fetch A    pymol/test/ref/C0030pkl.log
    1738 :info:fetch A    pymol/test/ref/C0021pdbstr.log
    1739 :info:fetch A    pymol/test/ref/M0052session.log
    1740 :info:fetch A    pymol/test/ref/L0040isomesh2.log
    1741 :info:fetch A    pymol/test/ref/C0020pdb.log
    1742 :info:fetch A    pymol/test/ref/M0021multi.log
    1743 :info:fetch A    pymol/test/ref/L0200electro.log
    1744 :info:fetch A    pymol/test/ref/C0550pseudo.log
    1745 :info:fetch A    pymol/test/ref/C1090coulomb.log
    1746 :info:fetch A    pymol/test/ref/L0020xplorread.log
    1747 :info:fetch A    pymol/test/ref/C0030pkl.pdb
    1748 :info:fetch A    pymol/test/ref/C1030selecting.log
    1749 :info:fetch A    pymol/test/ref/M0041do.log
    1750 :info:fetch A    pymol/test/ref/C0027mol2.log
    1751 :info:fetch A    pymol/test/ref/C0026sdf.log
    1752 :info:fetch A    pymol/test/ref/C1080isomore.log
    1753 :info:fetch A    pymol/test/ref/C0160get.log
    1754 :info:fetch A    pymol/test/ref/C0181embed.log
    1755 :info:fetch A    pymol/test/ref/C1070exporting.log
    1756 :info:fetch A    pymol/test/ref/C1010helping.log
    1757 :info:fetch A    pymol/test/ref/C0020pdb.pdb
    1758 :info:fetch A    pymol/test/README
    1759 :info:fetch A    pymol/test/vdiff
    1760 :info:fetch A    pymol/LICENSE
    1761 :info:fetch A    pymol/ov
    1762 :info:fetch A    pymol/ov/src
    1763 :info:fetch A    pymol/ov/src/Makefile.delsci
    1764 :info:fetch A    pymol/ov/src/OVContext.h
    1765 :info:fetch A    pymol/ov/src/OVOneToOne.h
    1766 :info:fetch A    pymol/ov/src/Makefile.in
    1767 :info:fetch A    pymol/ov/src/OVOneToAny.c
    1768 :info:fetch A    pymol/ov/src/OVLexicon.c
    1769 :info:fetch A    pymol/ov/src/OVOneToAny.h
    1770 :info:fetch A    pymol/ov/src/ov_utility.c
    1771 :info:fetch A    pymol/ov/src/OVLexicon.h
    1772 :info:fetch A    pymol/ov/src/ov_utility.h
    1773 :info:fetch A    pymol/ov/src/OVreturns.h
    1774 :info:fetch A    pymol/ov/src/ov_types.h
    1775 :info:fetch A    pymol/ov/src/OVHeapArray.c
    1776 :info:fetch A    pymol/ov/src/OVHeap.c
    1777 :info:fetch A    pymol/ov/src/OVRandom.c
    1778 :info:fetch A    pymol/ov/src/OVHeapArray.h
    1779 :info:fetch A    pymol/ov/src/ov_defines.h
    1780 :info:fetch A    pymol/ov/src/OVHeap.h
    1781 :info:fetch A    pymol/ov/src/Makefile.am
    1782 :info:fetch A    pymol/ov/src/OVContext.c
    1783 :info:fetch A    pymol/ov/src/OVRandom.h
    1784 :info:fetch A    pymol/ov/src/OVOneToOne.c
    1785 :info:fetch A    pymol/ov/src/ov_status.h
    1786 :info:fetch A    pymol/ov/src/ov_port.h
    1787 :info:fetch A    pymol/PACKAGING
    1788 :info:fetch A    pymol/AUTHORS
    1789 :info:fetch A    pymol/create_shadertext.py
    1790 :info:fetch A    pymol/setup.py
    1791 :info:fetch A    pymol/scripts
    1792 :info:fetch A    pymol/scripts/metaphorics
    1793 :info:fetch A    pymol/scripts/metaphorics/annotate.pml
    1794 :info:fetch A    pymol/scripts/metaphorics/alignment.pml
    1795 :info:fetch A    pymol/scripts/metaphorics/fedora.pml
    1796 :info:fetch A    pymol/ChangeLog
    1797 :info:fetch A    pymol/.svnignore
    1798 :info:fetch A    pymol/layer0
    1799 :info:fetch A    pymol/layer0/Makefile.in
    1800 :info:fetch A    pymol/layer0/os_types.h
    1801 :info:fetch A    pymol/layer0/Word.c
    1802 :info:fetch A    pymol/layer0/Deferred.c
    1803 :info:fetch A    pymol/layer0/Word.h
    1804 :info:fetch A    pymol/layer0/Feedback.c
    1805 :info:fetch A    pymol/layer0/Deferred.h
    1806 :info:fetch A    pymol/layer0/SphereData.h
    1807 :info:fetch A    pymol/layer0/Feedback.h
    1808 :info:fetch A    pymol/layer0/Raw.c
    1809 :info:fetch A    pymol/layer0/Block.c
    1810 :info:fetch A    pymol/layer0/Version.h
    1811 :info:fetch A    pymol/layer0/MemoryCache.c
    1812 :info:fetch A    pymol/layer0/Makefile.delsci
    1813 :info:fetch A    pymol/layer0/Raw.h
    1814 :info:fetch A    pymol/layer0/Block.h
    1815 :info:fetch A    pymol/layer0/Texture.c
    1816 :info:fetch A    pymol/layer0/os_std.h
    1817 :info:fetch A    pymol/layer0/MemoryCache.h
    1818 :info:fetch A    pymol/layer0/os_gl.c
    1819 :info:fetch A    pymol/layer0/Triangle.c
    1820 :info:fetch A    pymol/layer0/Texture.h
    1821 :info:fetch A    pymol/layer0/os_gl.h
    1822 :info:fetch A    pymol/layer0/PyMOLGlobals.h
    1823 :info:fetch A    pymol/layer0/Triangle.h
    1824 :info:fetch A    pymol/layer0/os_predef.h
    1825 :info:fetch A    pymol/layer0/ShaderMgr.c
    1826 :info:fetch A    pymol/layer0/os_gl_pre.h
    1827 :info:fetch A    pymol/layer0/ShaderMgr.h
    1828 :info:fetch A    pymol/layer0/PyMOLOptions.h
    1829 :info:fetch A    pymol/layer0/os_proprietary.h
    1830 :info:fetch A    pymol/layer0/os_python.h
    1831 :info:fetch A    pymol/layer0/Err.c
    1832 :info:fetch A    pymol/layer0/os_unix.h
    1833 :info:fetch A    pymol/layer0/Isosurf.c
    1834 :info:fetch A    pymol/layer0/Match.c
    1835 :info:fetch A    pymol/layer0/Tetsurf.c
    1836 :info:fetch A    pymol/layer0/Err.h
    1837 :info:fetch A    pymol/layer0/Isosurf.h
    1838 :info:fetch A    pymol/layer0/Match.h
    1839 :info:fetch A    pymol/layer0/Tetsurf.h
    1840 :info:fetch A    pymol/layer0/Vector.c
    1841 :info:fetch A    pymol/layer0/OOMac.h
    1842 :info:fetch A    pymol/layer0/os_time.h
    1843 :info:fetch A    pymol/layer0/Matrix.c
    1844 :info:fetch A    pymol/layer0/Vector.h
    1845 :info:fetch A    pymol/layer0/Matrix.h
    1846 :info:fetch A    pymol/layer0/Parse.c
    1847 :info:fetch A    pymol/layer0/Map.c
    1848 :info:fetch A    pymol/layer0/MemoryDebug.c
    1849 :info:fetch A    pymol/layer0/Parse.h
    1850 :info:fetch A    pymol/layer0/Map.h
    1851 :info:fetch A    pymol/layer0/Field.c
    1852 :info:fetch A    pymol/layer0/MemoryDebug.h
    1853 :info:fetch A    pymol/layer0/Queue.c
    1854 :info:fetch A    pymol/layer0/ListMacros.h
    1855 :info:fetch A    pymol/layer0/Sphere.c
    1856 :info:fetch A    pymol/layer0/Field.h
    1857 :info:fetch A    pymol/layer0/Queue.h
    1858 :info:fetch A    pymol/layer0/MyPNG.c
    1859 :info:fetch A    pymol/layer0/Sphere.h
    1860 :info:fetch A    pymol/layer0/Tracker.c
    1861 :info:fetch A    pymol/layer0/Pixmap.c
    1862 :info:fetch A    pymol/layer0/MyPNG.h
    1863 :info:fetch A    pymol/layer0/Tracker.h
    1864 :info:fetch A    pymol/layer0/Pixmap.h
    1865 :info:fetch A    pymol/layer0/os_limits.h
    1866 :info:fetch A    pymol/layer0/Util.c
    1867 :info:fetch A    pymol/layer0/Base.h
    1868 :info:fetch A    pymol/layer0/Crystal.c
    1869 :info:fetch A    pymol/layer0/Util.h
    1870 :info:fetch A    pymol/layer0/Debug.c
    1871 :info:fetch A    pymol/layer0/Crystal.h
    1872 :info:fetch A    pymol/layer0/Makefile.am
    1873 :info:fetch A    pymol/layer0/Debug.h
    1874 :info:fetch A    pymol/README
    1875 :info:fetch A    pymol/layer1
    1876 :info:fetch A    pymol/layer1/Makefile.in
    1877 :info:fetch A    pymol/layer1/Basis.c
    1878 :info:fetch A    pymol/layer1/Basis.h
    1879 :info:fetch A    pymol/layer1/CGO.c
    1880 :info:fetch A    pymol/layer1/CGO.h
    1881 :info:fetch A    pymol/layer1/Setting.c
    1882 :info:fetch A    pymol/layer1/Color.c
    1883 :info:fetch A    pymol/layer1/Movie.c
    1884 :info:fetch A    pymol/layer1/Setting.h
    1885 :info:fetch A    pymol/layer1/Color.h
    1886 :info:fetch A    pymol/layer1/Movie.h
    1887 :info:fetch A    pymol/layer1/FontGLUT8x13.c
    1888 :info:fetch A    pymol/layer1/Seq.c
    1889 :info:fetch A    pymol/layer1/Ortho.c
    1890 :info:fetch A    pymol/layer1/Ray.c
    1891 :info:fetch A    pymol/layer1/Seq.h
    1892 :info:fetch A    pymol/layer1/Pop.c
    1893 :info:fetch A    pymol/layer1/Makefile.delsci
    1894 :info:fetch A    pymol/layer1/P.c
    1895 :info:fetch A    pymol/layer1/Ray.h
    1896 :info:fetch A    pymol/layer1/Ortho.h
    1897 :info:fetch A    pymol/layer1/Wizard.c
    1898 :info:fetch A    pymol/layer1/Pop.h
    1899 :info:fetch A    pymol/layer1/P.h
    1900 :info:fetch A    pymol/layer1/Wizard.h
    1901 :info:fetch A    pymol/layer1/Extrude.c
    1902 :info:fetch A    pymol/layer1/Extrude.h
    1903 :info:fetch A    pymol/layer1/FontGLUT9x15.c
    1904 :info:fetch A    pymol/layer1/FontGLUTHel10.c
    1905 :info:fetch A    pymol/layer1/FontGLUTHel12.c
    1906 :info:fetch A    pymol/layer1/ButMode.c
    1907 :info:fetch A    pymol/layer1/TypeFace.c
    1908 :info:fetch A    pymol/layer1/FontGLUTHel18.c
    1909 :info:fetch A    pymol/layer1/ButMode.h
    1910 :info:fetch A    pymol/layer1/TypeFace.h
    1911 :info:fetch A    pymol/layer1/FontType.c
    1912 :info:fetch A    pymol/layer1/View.c
    1913 :info:fetch A    pymol/layer1/FontTTF2.h
    1914 :info:fetch A    pymol/layer1/FontType.h
    1915 :info:fetch A    pymol/layer1/Shaker.c
    1916 :info:fetch A    pymol/layer1/View.h
    1917 :info:fetch A    pymol/layer1/Shaker.h
    1918 :info:fetch A    pymol/layer1/PConv.c
    1919 :info:fetch A    pymol/layer1/Rep.c
    1920 :info:fetch A    pymol/layer1/PyMOLObject.c
    1921 :info:fetch A    pymol/layer1/Symmetry.c
    1922 :info:fetch A    pymol/layer1/PConv.h
    1923 :info:fetch A    pymol/layer1/Rep.h
    1924 :info:fetch A    pymol/layer1/Character.c
    1925 :info:fetch A    pymol/layer1/PyMOLObject.h
    1926 :info:fetch A    pymol/layer1/Scene.c
    1927 :info:fetch A    pymol/layer1/Symmetry.h
    1928 :info:fetch A    pymol/layer1/Character.h
    1929 :info:fetch A    pymol/layer1/FontGLUT.c
    1930 :info:fetch A    pymol/layer1/Scene.h
    1931 :info:fetch A    pymol/layer1/Font.c
    1932 :info:fetch A    pymol/layer1/FontGLUT.h
    1933 :info:fetch A    pymol/layer1/Font.h
    1934 :info:fetch A    pymol/layer1/Control.c
    1935 :info:fetch A    pymol/layer1/ScrollBar.c
    1936 :info:fetch A    pymol/layer1/Text.c
    1937 :info:fetch A    pymol/layer1/Control.h
    1938 :info:fetch A    pymol/layer1/Makefile.am
    1939 :info:fetch A    pymol/layer1/ScrollBar.h
    1940 :info:fetch A    pymol/layer1/Text.h
    1941 :info:fetch A    pymol/layer1/FontTTF.h
    1942 :info:fetch A    pymol/layer2
    1943 :info:fetch A    pymol/layer2/ObjectVolume.c
    1944 :info:fetch A    pymol/layer2/ObjectCGO.c
    1945 :info:fetch A    pymol/layer2/Makefile.in
    1946 :info:fetch A    pymol/layer2/RepCylBond.c
    1947 :info:fetch A    pymol/layer2/ObjectVolume.h
    1948 :info:fetch A    pymol/layer2/ObjectCGO.h
    1949 :info:fetch A    pymol/layer2/RepCylBond.h
    1950 :info:fetch A    pymol/layer2/AtomInfo.c
    1951 :info:fetch A    pymol/layer2/DistSet.c
    1952 :info:fetch A    pymol/layer2/ObjectSurface.c
    1953 :info:fetch A    pymol/layer2/AtomInfo.h
    1954 :info:fetch A    pymol/layer2/RepDihedral.c
    1955 :info:fetch A    pymol/layer2/DistSet.h
    1956 :info:fetch A    pymol/layer2/ObjectSurface.h
    1957 :info:fetch A    pymol/layer2/ObjectSlice.c
    1958 :info:fetch A    pymol/layer2/RepLabel.c
    1959 :info:fetch A    pymol/layer2/RepDihedral.h
    1960 :info:fetch A    pymol/layer2/RepLabel.h
    1961 :info:fetch A    pymol/layer2/ObjectSlice.h
    1962 :info:fetch A    pymol/layer2/RepSphere.c
    1963 :info:fetch A    pymol/layer2/Makefile.delsci
    1964 :info:fetch A    pymol/layer2/SculptCache.c
    1965 :info:fetch A    pymol/layer2/ObjectGadgetRamp.c
    1966 :info:fetch A    pymol/layer2/RepSphere.h
    1967 :info:fetch A    pymol/layer2/RepMesh.c
    1968 :info:fetch A    pymol/layer2/SculptCache.h
    1969 :info:fetch A    pymol/layer2/ObjectGadgetRamp.h
    1970 :info:fetch A    pymol/layer2/RepMesh.h
    1971 :info:fetch A    pymol/layer2/RepDistDash.c
    1972 :info:fetch A    pymol/layer2/ObjectMolecule2.c
    1973 :info:fetch A    pymol/layer2/RepDistDash.h
    1974 :info:fetch A    pymol/layer2/ObjectCallback.c
    1975 :info:fetch A    pymol/layer2/ObjectCallback.h
    1976 :info:fetch A    pymol/layer2/RepEllipsoid.c
    1977 :info:fetch A    pymol/layer2/VFont.c
    1978 :info:fetch A    pymol/layer2/RepDot.c
    1979 :info:fetch A    pymol/layer2/RepSurface.c
    1980 :info:fetch A    pymol/layer2/RepEllipsoid.h
    1981 :info:fetch A    pymol/layer2/VFont.h
    1982 :info:fetch A    pymol/layer2/RepDot.h
    1983 :info:fetch A    pymol/layer2/RepSurface.h
    1984 :info:fetch A    pymol/layer2/ObjectMap.c
    1985 :info:fetch A    pymol/layer2/ObjectMap.h
    1986 :info:fetch A    pymol/layer2/Sculpt.c
    1987 :info:fetch A    pymol/layer2/RepDistLabel.c
    1988 :info:fetch A    pymol/layer2/RepCartoon.c
    1989 :info:fetch A    pymol/layer2/RepNonbonded.c
    1990 :info:fetch A    pymol/layer2/Sculpt.h
    1991 :info:fetch A    pymol/layer2/RepDistLabel.h
    1992 :info:fetch A    pymol/layer2/RepWireBond.c
    1993 :info:fetch A    pymol/layer2/RepCartoon.h
    1994 :info:fetch A    pymol/layer2/CoordSet.c
    1995 :info:fetch A    pymol/layer2/RepNonbonded.h
    1996 :info:fetch A    pymol/layer2/RepRibbon.c
    1997 :info:fetch A    pymol/layer2/RepNonbondedSphere.c
    1998 :info:fetch A    pymol/layer2/RepWireBond.h
    1999 :info:fetch A    pymol/layer2/CoordSet.h
    2000 :info:fetch A    pymol/layer2/RepRibbon.h
    2001 :info:fetch A    pymol/layer2/RepNonbondedSphere.h
    2002 :info:fetch A    pymol/layer2/ObjectDist.c
    2003 :info:fetch A    pymol/layer2/ObjectMolecule.c
    2004 :info:fetch A    pymol/layer2/RepAngle.c
    2005 :info:fetch A    pymol/layer2/ObjectDist.h
    2006 :info:fetch A    pymol/layer2/ObjectMolecule.h
    2007 :info:fetch A    pymol/layer2/RepAngle.h
    2008 :info:fetch A    pymol/layer2/ObjectAlignment.c
    2009 :info:fetch A    pymol/layer2/GadgetSet.c
    2010 :info:fetch A    pymol/layer2/ObjectAlignment.h
    2011 :info:fetch A    pymol/layer2/GadgetSet.h
    2012 :info:fetch A    pymol/layer2/ObjectGadget.c
    2013 :info:fetch A    pymol/layer2/ObjectGroup.c
    2014 :info:fetch A    pymol/layer2/ObjectMesh.c
    2015 :info:fetch A    pymol/layer2/ObjectGadget.h
    2016 :info:fetch A    pymol/layer2/Makefile.am
    2017 :info:fetch A    pymol/layer2/ObjectGroup.h
    2018 :info:fetch A    pymol/layer2/ObjectMesh.h
    2019 :info:fetch A    pymol/layer3
    2020 :info:fetch A    pymol/layer3/Makefile.delsci
    2021 :info:fetch A    pymol/layer3/Seeker.c
    2022 :info:fetch A    pymol/layer3/PlugIOManager.h
    2023 :info:fetch A    pymol/layer3/Selector.c
    2024 :info:fetch A    pymol/layer3/Executive.c
    2025 :info:fetch A    pymol/layer3/Makefile.in
    2026 :info:fetch A    pymol/layer3/Seeker.h
    2027 :info:fetch A    pymol/layer3/Selector.h
    2028 :info:fetch A    pymol/layer3/Editor.c
    2029 :info:fetch A    pymol/layer3/Executive.h
    2030 :info:fetch A    pymol/layer3/Makefile.am
    2031 :info:fetch A    pymol/layer3/PlugIOManager.c
    2032 :info:fetch A    pymol/layer3/Editor.h
    2033 :info:fetch A    pymol/layer3/Executive_pre.h
    2034 :info:fetch A    pymol/contrib
    2035 :info:fetch A    pymol/contrib/Makefile.delsci
    2036 :info:fetch A    pymol/contrib/uiuc
    2037 :info:fetch A    pymol/contrib/uiuc/plugins
    2038 :info:fetch A    pymol/contrib/uiuc/plugins/LICENSE
    2039 :info:fetch A    pymol/contrib/uiuc/plugins/include
    2040 :info:fetch A    pymol/contrib/uiuc/plugins/include/vmdconio.h
    2041 :info:fetch A    pymol/contrib/uiuc/plugins/include/molfile_plugin.h
    2042 :info:fetch A    pymol/contrib/uiuc/plugins/include/vmdplugin.h
    2043 :info:fetch A    pymol/contrib/uiuc/plugins/include/import_graphics_plugin.h
    2044 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin
    2045 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/LICENSE
    2046 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src
    2047 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h
    2048 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c
    2049 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c
    2050 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp
    2051 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp
    2052 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp
    2053 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c
    2054 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp
    2055 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp
    2056 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp
    2057 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c
    2058 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp
    2059 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp
    2060 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp
    2061 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/largefiles.h
    2062 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/hash.c
    2063 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp
    2064 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c
    2065 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/objects.make
    2066 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c
    2067 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h
    2068 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/hash.h
    2069 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp
    2070 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c
    2071 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c
    2072 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h
    2073 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h
    2074 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/inthash.h
    2075 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp
    2076 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c
    2077 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp
    2078 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c
    2079 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp
    2080 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c
    2081 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp
    2082 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/unit_conversion.h
    2083 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/vmddir.h
    2084 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp
    2085 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp
    2086 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp
    2087 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/gaussianplugin.h
    2088 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c
    2089 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp
    2090 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp
    2091 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c
    2092 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp
    2093 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/corplugin.c
    2094 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c
    2095 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h
    2096 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c
    2097 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h
    2098 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/fortread.h
    2099 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c
    2100 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp
    2101 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/fastio.h
    2102 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp
    2103 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp
    2104 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx
    2105 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp
    2106 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h
    2107 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp
    2108 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp
    2109 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c
    2110 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c
    2111 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp
    2112 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c
    2113 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c
    2114 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp
    2115 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c
    2116 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c
    2117 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp
    2118 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp
    2119 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c
    2120 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp
    2121 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c
    2122 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp
    2123 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h
    2124 :info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/update.py
    2125 :info:fetch A    pymol/contrib/uiuc/README
    2126 :info:fetch A    pymol/contrib/sglite
    2127 :info:fetch A    pymol/contrib/sglite/Makefile.delsci
    2128 :info:fetch A    pymol/contrib/sglite/LICENSE
    2129 :info:fetch A    pymol/contrib/sglite/Makefile.in
    2130 :info:fetch A    pymol/contrib/sglite/sgstr.c
    2131 :info:fetch A    pymol/contrib/sglite/sgtidy.c
    2132 :info:fetch A    pymol/contrib/sglite/sggen.c
    2133 :info:fetch A    pymol/contrib/sglite/sgnorm.c
    2134 :info:fetch A    pymol/contrib/sglite/sgutil.c
    2135 :info:fetch A    pymol/contrib/sglite/sghkl.c
    2136 :info:fetch A    pymol/contrib/sglite/sgfile.c
    2137 :info:fetch A    pymol/contrib/sglite/sglitemodule.def
    2138 :info:fetch A    pymol/contrib/sglite/sgprop.c
    2139 :info:fetch A    pymol/contrib/sglite/sghall.c
    2140 :info:fetch A    pymol/contrib/sglite/sgtype.c
    2141 :info:fetch A    pymol/contrib/sglite/sgcharmx.c
    2142 :info:fetch A    pymol/contrib/sglite/sgmetric.c
    2143 :info:fetch A    pymol/contrib/sglite/sgcb.c
    2144 :info:fetch A    pymol/contrib/sglite/sgss.c
    2145 :info:fetch A    pymol/contrib/sglite/sgsymbols.c
    2146 :info:fetch A    pymol/contrib/sglite/sgmath.c
    2147 :info:fetch A    pymol/contrib/sglite/sgconst.h
    2148 :info:fetch A    pymol/contrib/sglite/runtests.c
    2149 :info:fetch A    pymol/contrib/sglite/sgrefset.h
    2150 :info:fetch A    pymol/contrib/sglite/Makefile.am
    2151 :info:fetch A    pymol/contrib/sglite/sgglobal.c
    2152 :info:fetch A    pymol/contrib/sglite/sgltr.c
    2153 :info:fetch A    pymol/contrib/sglite/sglite.h
    2154 :info:fetch A    pymol/contrib/sglite/sglitemodule.c
    2155 :info:fetch A    pymol/contrib/champ
    2156 :info:fetch A    pymol/contrib/champ/test
    2157 :info:fetch A    pymol/contrib/champ/test/20export_naming.py
    2158 :info:fetch A    pymol/contrib/champ/test/22export_partial_charges.py
    2159 :info:fetch A    pymol/contrib/champ/test/50nci.py
    2160 :info:fetch A    pymol/contrib/champ/test/21export_formal_charges.py
    2161 :info:fetch A    pymol/contrib/champ/test/01basic.py
    2162 :info:fetch A    pymol/contrib/champ/test/10stereo.py
    2163 :info:fetch A    pymol/contrib/champ/test/11stereo.py
    2164 :info:fetch A    pymol/contrib/champ/Makefile.delsci
    2165 :info:fetch A    pymol/contrib/champ/os_std.h
    2166 :info:fetch A    pymol/contrib/champ/LICENSE
    2167 :info:fetch A    pymol/contrib/champ/Makefile.in
    2168 :info:fetch A    pymol/contrib/champ/chiral.c
    2169 :info:fetch A    pymol/contrib/champ/mac.h
    2170 :info:fetch A    pymol/contrib/champ/feedback2.c
    2171 :info:fetch A    pymol/contrib/champ/chiral.h
    2172 :info:fetch A    pymol/contrib/champ/os_memory.c
    2173 :info:fetch A    pymol/contrib/champ/err2.c
    2174 :info:fetch A    pymol/contrib/champ/feedback2.h
    2175 :info:fetch A    pymol/contrib/champ/list.c
    2176 :info:fetch A    pymol/contrib/champ/README
    2177 :info:fetch A    pymol/contrib/champ/os_memory.h
    2178 :info:fetch A    pymol/contrib/champ/err2.h
    2179 :info:fetch A    pymol/contrib/champ/list.h
    2180 :info:fetch A    pymol/contrib/champ/vla.c
    2181 :info:fetch A    pymol/contrib/champ/strblock.c
    2182 :info:fetch A    pymol/contrib/champ/os_python.h
    2183 :info:fetch A    pymol/contrib/champ/sort.c
    2184 :info:fetch A    pymol/contrib/champ/vla.h
    2185 :info:fetch A    pymol/contrib/champ/champ.c
    2186 :info:fetch A    pymol/contrib/champ/Makefile.am
    2187 :info:fetch A    pymol/contrib/champ/strblock.h
    2188 :info:fetch A    pymol/contrib/champ/const.h
    2189 :info:fetch A    pymol/contrib/champ/sort.h
    2190 :info:fetch A    pymol/contrib/champ/champ_module.c
    2191 :info:fetch A    pymol/contrib/champ/champ.h
    2192 :info:fetch A    pymol/contrib/modules
    2193 :info:fetch A    pymol/contrib/modules/ExtensionClass.stx
    2194 :info:fetch A    pymol/contrib/modules/extensionclass.def
    2195 :info:fetch A    pymol/contrib/modules/ExtensionClass.c-py152
    2196 :info:fetch A    pymol/contrib/modules/Makefile.in
    2197 :info:fetch A    pymol/contrib/modules/ExtensionClass.LICENSE
    2198 :info:fetch A    pymol/contrib/modules/ExtensionClass.c
    2199 :info:fetch A    pymol/contrib/modules/Makefile.static
    2200 :info:fetch A    pymol/contrib/modules/Setup.in
    2201 :info:fetch A    pymol/contrib/modules/ExtensionClass.h-py152
    2202 :info:fetch A    pymol/contrib/modules/ExtensionClass.h
    2203 :info:fetch A    pymol/contrib/modules/notes
    2204 :info:fetch A    pymol/contrib/modules/Makefile.am
    2205 :info:fetch A    pymol/contrib/modules/Makefile.pre.in.src
    2206 :info:fetch A    pymol/contrib/README
    2207 :info:fetch A    pymol/layer4
    2208 :info:fetch A    pymol/layer4/Makefile.delsci
    2209 :info:fetch A    pymol/layer4/Export.c
    2210 :info:fetch A    pymol/layer4/Makefile.in
    2211 :info:fetch A    pymol/layer4/Cmd.c
    2212 :info:fetch A    pymol/layer4/PopUp.c
    2213 :info:fetch A    pymol/layer4/Menu.c
    2214 :info:fetch A    pymol/layer4/Export.h
    2215 :info:fetch A    pymol/layer4/Cmd.h
    2216 :info:fetch A    pymol/layer4/Makefile.am
    2217 :info:fetch A    pymol/layer4/PopUp.h
    2218 :info:fetch A    pymol/layer4/Menu.h
    2219 :info:fetch A    pymol/setup
    2220 :info:fetch A    pymol/setup/Rules.sunos5
    2221 :info:fetch A    pymol/setup/pymol.csh.template
    2222 :info:fetch A    pymol/setup/Rules.osx-fink
    2223 :info:fetch A    pymol/setup/pymol.com.template
    2224 :info:fetch A    pymol/setup/Rules.linux
    2225 :info:fetch A    pymol/setup/Rules.osx-framework
    2226 :info:fetch A    pymol/setup/pymol.com.basic
    2227 :info:fetch A    pymol/setup/Rules.sunos5-mindep
    2228 :info:fetch A    pymol/setup/pymol.com.linux-rh7x
    2229 :info:fetch A    pymol/setup/INSTALL.unix-mindep
    2230 :info:fetch A    pymol/setup/setup.sh.unix-mindep
    2231 :info:fetch A    pymol/setup/sample.pymolrc
    2232 :info:fetch A    pymol/setup/Rules.make
    2233 :info:fetch A    pymol/setup/Rules.linux-fc9
    2234 :info:fetch A    pymol/setup/setup.sh.unix-helper
    2235 :info:fetch A    pymol/setup/setup.sh
    2236 :info:fetch A    pymol/setup/setup.sh.macosx-x11
    2237 :info:fetch A    pymol/setup/pymol.com.osx-fink
    2238 :info:fetch A    pymol/setup/Rules.sunos5-semistat
    2239 :info:fetch A    pymol/setup/Rules.linux-rh7x
    2240 :info:fetch A    pymol/setup/Rules.irix-mindep
    2241 :info:fetch A    pymol/layer5
    2242 :info:fetch A    pymol/layer5/Makefile.delsci
    2243 :info:fetch A    pymol/layer5/PyMOL.c
    2244 :info:fetch A    pymol/layer5/TestPyMOL.c
    2245 :info:fetch A    pymol/layer5/Makefile.in
    2246 :info:fetch A    pymol/layer5/main.c
    2247 :info:fetch A    pymol/layer5/PyMOL.h
    2248 :info:fetch A    pymol/layer5/TestPyMOL.h
    2249 :info:fetch A    pymol/layer5/Makefile.am
    2250 :info:fetch A    pymol/layer5/main.h
    2251 :info:fetch A    pymol/products
    2252 :info:fetch A    pymol/products/.preserve
    2253 :info:fetch A    pymol/INSTALL
    2254 :info:fetch A    pymol/DEVELOPERS
    2255 :info:fetch A    pymol/COPYING
    2256 :info:fetch A    pymol/modules
    2257 :info:fetch A    pymol/modules/compile_pymol.py
    2258 :info:fetch A    pymol/modules/pymol
    2259 :info:fetch A    pymol/modules/pymol/colorramping.py
    2260 :info:fetch A    pymol/modules/pymol/creating.py
    2261 :info:fetch A    pymol/modules/pymol/wizarding.py
    2262 :info:fetch A    pymol/modules/pymol/__init__.py
    2263 :info:fetch A    pymol/modules/pymol/moving.py
    2264 :info:fetch A    pymol/modules/pymol/completing.py
    2265 :info:fetch A    pymol/modules/pymol/preset.py
    2266 :info:fetch A    pymol/modules/pymol/externing.py
    2267 :info:fetch A    pymol/modules/pymol/parsing.py
    2268 :info:fetch A    pymol/modules/pymol/fitting.py
    2269 :info:fetch A    pymol/modules/pymol/menu.py
    2270 :info:fetch A    pymol/modules/pymol/computing.py
    2271 :info:fetch A    pymol/modules/pymol/importing.py
    2272 :info:fetch A    pymol/modules/pymol/cgo.py
    2273 :info:fetch A    pymol/modules/pymol/m4x.py
    2274 :info:fetch A    pymol/modules/pymol/api.py
    2275 :info:fetch A    pymol/modules/pymol/internal.py
    2276 :info:fetch A    pymol/modules/pymol/util.py
    2277 :info:fetch A    pymol/modules/pymol/selecting.py
    2278 :info:fetch A    pymol/modules/pymol/experimenting.py
    2279 :info:fetch A    pymol/modules/pymol/exporting.py
    2280 :info:fetch A    pymol/modules/pymol/feedingback.py
    2281 :info:fetch A    pymol/modules/pymol/gui.py
    2282 :info:fetch A    pymol/modules/pymol/editor.py
    2283 :info:fetch A    pymol/modules/pymol/locking.py
    2284 :info:fetch A    pymol/modules/pymol/plugins
    2285 :info:fetch A    pymol/modules/pymol/plugins/__init__.py
    2286 :info:fetch A    pymol/modules/pymol/plugins/managergui.py
    2287 :info:fetch A    pymol/modules/pymol/plugins/repository.py
    2288 :info:fetch A    pymol/modules/pymol/plugins/installation.py
    2289 :info:fetch A    pymol/modules/pymol/plugins/legacysupport.py
    2290 :info:fetch A    pymol/modules/pymol/controlling.py
    2291 :info:fetch A    pymol/modules/pymol/constants_palette.py
    2292 :info:fetch A    pymol/modules/pymol/vfont.py
    2293 :info:fetch A    pymol/modules/pymol/parser.py
    2294 :info:fetch A    pymol/modules/pymol/callback.py
    2295 :info:fetch A    pymol/modules/pymol/opengl
    2296 :info:fetch A    pymol/modules/pymol/opengl/gl
    2297 :info:fetch A    pymol/modules/pymol/opengl/gl/__init__.py
    2298 :info:fetch A    pymol/modules/pymol/opengl/__init__.py
    2299 :info:fetch A    pymol/modules/pymol/opengl/glu
    2300 :info:fetch A    pymol/modules/pymol/opengl/glu/__init__.py
    2301 :info:fetch A    pymol/modules/pymol/opengl/glut
    2302 :info:fetch A    pymol/modules/pymol/opengl/glut/__init__.py
    2303 :info:fetch A    pymol/modules/pymol/keyboard.py
    2304 :info:fetch A    pymol/modules/pymol/cmd.py
    2305 :info:fetch A    pymol/modules/pymol/querying.py
    2306 :info:fetch A    pymol/modules/pymol/keywords.py
    2307 :info:fetch A    pymol/modules/pymol/viewing.py
    2308 :info:fetch A    pymol/modules/pymol/invocation.py
    2309 :info:fetch A    pymol/modules/pymol/contrib
    2310 :info:fetch A    pymol/modules/pymol/contrib/__init__.py
    2311 :info:fetch A    pymol/modules/pymol/wizard
    2312 :info:fetch A    pymol/modules/pymol/wizard/box.py
    2313 :info:fetch A    pymol/modules/pymol/wizard/charge.py
    2314 :info:fetch A    pymol/modules/pymol/wizard/benchmark.py
    2315 :info:fetch A    pymol/modules/pymol/wizard/distance.py
    2316 :info:fetch A    pymol/modules/pymol/wizard/pair_fit.py
    2317 :info:fetch A    pymol/modules/pymol/wizard/__init__.py
    2318 :info:fetch A    pymol/modules/pymol/wizard/appearance.py
    2319 :info:fetch A    pymol/modules/pymol/wizard/renaming.py
    2320 :info:fetch A    pymol/modules/pymol/wizard/fedora.py
    2321 :info:fetch A    pymol/modules/pymol/wizard/stereodemo.py
    2322 :info:fetch A    pymol/modules/pymol/wizard/security.py
    2323 :info:fetch A    pymol/modules/pymol/wizard/sculpting.py
    2324 :info:fetch A    pymol/modules/pymol/wizard/annotation.py
    2325 :info:fetch A    pymol/modules/pymol/wizard/density.py
    2326 :info:fetch A    pymol/modules/pymol/wizard/label.py
    2327 :info:fetch A    pymol/modules/pymol/wizard/pseudoatom.py
    2328 :info:fetch A    pymol/modules/pymol/wizard/toggle.py
    2329 :info:fetch A    pymol/modules/pymol/wizard/dragging.py
    2330 :info:fetch A    pymol/modules/pymol/wizard/message.py
    2331 :info:fetch A    pymol/modules/pymol/wizard/demo.py
    2332 :info:fetch A    pymol/modules/pymol/wizard/mutagenesis.py
    2333 :info:fetch A    pymol/modules/pymol/wizard/measurement.py
    2334 :info:fetch A    pymol/modules/pymol/wizard/filter.py
    2335 :info:fetch A    pymol/modules/pymol/wizard/cleanup.py
    2336 :info:fetch A    pymol/modules/pymol/checking.py
    2337 :info:fetch A    pymol/modules/pymol/shortcut.py
    2338 :info:fetch A    pymol/modules/pymol/commanding.py
    2339 :info:fetch A    pymol/modules/pymol/constants.py
    2340 :info:fetch A    pymol/modules/pymol/setting.py
    2341 :info:fetch A    pymol/modules/pymol/movie.py
    2342 :info:fetch A    pymol/modules/pymol/povray.py
    2343 :info:fetch A    pymol/modules/pymol/selector.py
    2344 :info:fetch A    pymol/modules/pymol/editing.py
    2345 :info:fetch A    pymol/modules/pymol/xray.py
    2346 :info:fetch A    pymol/modules/pymol/rpc.py
    2347 :info:fetch A    pymol/modules/pymol/embed
    2348 :info:fetch A    pymol/modules/pymol/embed/wxpymol
    2349 :info:fetch A    pymol/modules/pymol/embed/wxpymol/__init__.py
    2350 :info:fetch A    pymol/modules/pymol/embed/epymol
    2351 :info:fetch A    pymol/modules/pymol/embed/epymol/__init__.py
    2352 :info:fetch A    pymol/modules/pymol/embed/__init__.py
    2353 :info:fetch A    pymol/modules/pymol/monitoring.py
    2354 :info:fetch A    pymol/modules/pymol/xwin.py
    2355 :info:fetch A    pymol/modules/pymol/helping.py
    2356 :info:fetch A    pymol/modules/pymol/headering.py
    2357 :info:fetch A    pymol/modules/launch_pymol.py
    2358 :info:fetch A    pymol/modules/pmg_tk
    2359 :info:fetch A    pymol/modules/pmg_tk/TextEditor.py
    2360 :info:fetch A    pymol/modules/pmg_tk/startup
    2361 :info:fetch A    pymol/modules/pmg_tk/startup/__init__.py
    2362 :info:fetch A    pymol/modules/pmg_tk/startup/remote_pdb_load.py
    2363 :info:fetch A    pymol/modules/pmg_tk/startup/apbs_tools.py
    2364 :info:fetch A    pymol/modules/pmg_tk/Setting.py
    2365 :info:fetch A    pymol/modules/pmg_tk/PyMOLMapLoad.py
    2366 :info:fetch A    pymol/modules/pmg_tk/__init__.py
    2367 :info:fetch A    pymol/modules/pmg_tk/pmw.tgz
    2368 :info:fetch A    pymol/modules/pmg_tk/skins
    2369 :info:fetch A    pymol/modules/pmg_tk/skins/demo
    2370 :info:fetch A    pymol/modules/pmg_tk/skins/demo/__init__.py
    2371 :info:fetch A    pymol/modules/pmg_tk/skins/__init__.py
    2372 :info:fetch A    pymol/modules/pmg_tk/skins/normal
    2373 :info:fetch A    pymol/modules/pmg_tk/skins/normal/__init__.py
    2374 :info:fetch A    pymol/modules/pmg_tk/skins/normal/ModalWindow.py
    2375 :info:fetch A    pymol/modules/pmg_tk/skins/normal/builder.py
    2376 :info:fetch A    pymol/modules/pmg_tk/SetEditor.py
    2377 :info:fetch A    pymol/modules/pmg_tk/Demo.py
    2378 :info:fetch A    pymol/modules/pmg_tk/PMGApp.py
    2379 :info:fetch A    pymol/modules/pmg_tk/ColorEditor.py
    2380 :info:fetch A    pymol/modules/pmg_tk/volume.py
    2381 :info:fetch A    pymol/modules/pmg_wx
    2382 :info:fetch A    pymol/modules/pmg_wx/__init__.py
    2383 :info:fetch A    pymol/modules/cealign
    2384 :info:fetch A    pymol/modules/cealign/src
    2385 :info:fetch A    pymol/modules/cealign/src/ccealignmodule.H
    2386 :info:fetch A    pymol/modules/cealign/src/ce_types.h
    2387 :info:fetch A    pymol/modules/cealign/src/tnt
    2388 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_matrix.h
    2389 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_array2d.h
    2390 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_array3d.h
    2391 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_linalg.h
    2392 :info:fetch A    pymol/modules/cealign/src/tnt/jama_eig.h
    2393 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_math_utils.h
    2394 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_stopwatch.h
    2395 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_subscript.h
    2396 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_fortran_array1d_utils.h
    2397 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_sparse_vector.h
    2398 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_fortran_array2d_utils.h
    2399 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_fortran_array3d_utils.h
    2400 :info:fetch A    pymol/modules/cealign/src/tnt/tnt.h
    2401 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_sparse_matrix.h
    2402 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_i_refvec.h
    2403 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_array1d_utils.h
    2404 :info:fetch A    pymol/modules/cealign/src/tnt/jama_lu.h
    2405 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_array2d_utils.h
    2406 :info:fetch A    pymol/modules/cealign/src/tnt/jama_cholesky.h
    2407 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_array3d_utils.h
    2408 :info:fetch A    pymol/modules/cealign/src/tnt/jama_qr.h
    2409 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_version.h
    2410 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_lapack.h
    2411 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_fortran_array1d.h
    2412 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_fortran_array2d.h
    2413 :info:fetch A    pymol/modules/cealign/src/tnt/jama_svd.h
    2414 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_fortran_array3d.h
    2415 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_vector.h
    2416 :info:fetch A    pymol/modules/cealign/src/tnt/tnt_array1d.h
    2417 :info:fetch A    pymol/modules/cealign/src/ccealignmodule.cpp
    2418 :info:fetch A    pymol/modules/pymol2
    2419 :info:fetch A    pymol/modules/pymol2/__init__.py
    2420 :info:fetch A    pymol/modules/pymol2/make_cmd2.py
    2421 :info:fetch A    pymol/modules/pymol2/cmd2.py
    2422 :info:fetch A    pymol/modules/chempy
    2423 :info:fetch A    pymol/modules/chempy/cpv.py
    2424 :info:fetch A    pymol/modules/chempy/xyz.py
    2425 :info:fetch A    pymol/modules/chempy/bmin
    2426 :info:fetch A    pymol/modules/chempy/bmin/util.py
    2427 :info:fetch A    pymol/modules/chempy/bmin/__init__.py
    2428 :info:fetch A    pymol/modules/chempy/bmin/state.py
    2429 :info:fetch A    pymol/modules/chempy/bmin/commands.py
    2430 :info:fetch A    pymol/modules/chempy/bmin/realtime.py
    2431 :info:fetch A    pymol/modules/chempy/__init__.py
    2432 :info:fetch A    pymol/modules/chempy/fragments
    2433 :info:fetch A    pymol/modules/chempy/fragments/__init__.py
    2434 :info:fetch A    pymol/modules/chempy/gamess1.py
    2435 :info:fetch A    pymol/modules/chempy/mae.py
    2436 :info:fetch A    pymol/modules/chempy/mass.py
    2437 :info:fetch A    pymol/modules/chempy/pdb.py
    2438 :info:fetch A    pymol/modules/chempy/arc.py
    2439 :info:fetch A    pymol/modules/chempy/bonds.py
    2440 :info:fetch A    pymol/modules/chempy/cc1.py
    2441 :info:fetch A    pymol/modules/chempy/fast
    2442 :info:fetch A    pymol/modules/chempy/fast/__init__.py
    2443 :info:fetch A    pymol/modules/chempy/io.py
    2444 :info:fetch A    pymol/modules/chempy/protein.py
    2445 :info:fetch A    pymol/modules/chempy/protein_residues.py
    2446 :info:fetch A    pymol/modules/chempy/place.py
    2447 :info:fetch A    pymol/modules/chempy/water_residues.py
    2448 :info:fetch A    pymol/modules/chempy/protein_amber.py
    2449 :info:fetch A    pymol/modules/chempy/gms.py
    2450 :info:fetch A    pymol/modules/chempy/pkl.py
    2451 :info:fetch A    pymol/modules/chempy/water_amber.py
    2452 :info:fetch A    pymol/modules/chempy/bond_amber.py
    2453 :info:fetch A    pymol/modules/chempy/dictdb.py
    2454 :info:fetch A    pymol/modules/chempy/charge.py
    2455 :info:fetch A    pymol/modules/chempy/brick.py
    2456 :info:fetch A    pymol/modules/chempy/neighbor.py
    2457 :info:fetch A    pymol/modules/chempy/cif.py
    2458 :info:fetch A    pymol/modules/chempy/champ
    2459 :info:fetch A    pymol/modules/chempy/champ/amber99.py
    2460 :info:fetch A    pymol/modules/chempy/champ/formal_charges.py
    2461 :info:fetch A    pymol/modules/chempy/champ/__init__.py
    2462 :info:fetch A    pymol/modules/chempy/champ/assign.py
    2463 :info:fetch A    pymol/modules/chempy/lst.py
    2464 :info:fetch A    pymol/modules/chempy/tinker
    2465 :info:fetch A    pymol/modules/chempy/tinker/__init__.py
    2466 :info:fetch A    pymol/modules/chempy/tinker/state.py
    2467 :info:fetch A    pymol/modules/chempy/tinker/realtime.py
    2468 :info:fetch A    pymol/modules/chempy/tinker/keyword.py
    2469 :info:fetch A    pymol/modules/chempy/tinker/amber.py
    2470 :info:fetch A    pymol/modules/chempy/protein_amber99.py
    2471 :info:fetch A    pymol/modules/chempy/mol2.py
    2472 :info:fetch A    pymol/modules/chempy/sdf.py
    2473 :info:fetch A    pymol/modules/chempy/mmd.py
    2474 :info:fetch A    pymol/modules/chempy/map.py
    2475 :info:fetch A    pymol/modules/chempy/solvate.py
    2476 :info:fetch A    pymol/modules/chempy/cex.py
    2477 :info:fetch A    pymol/modules/chempy/hetatm.py
    2478 :info:fetch A    pymol/modules/chempy/models.py
    2479 :info:fetch A    pymol/modules/chempy/protein_mmff.py
    2480 :info:fetch A    pymol/modules/chempy/mol.py
    2481 :info:fetch A    pymol/modules/chempy/bond_mmff.py
    2482 :info:fetch A    pymol/modules/web
    2483 :info:fetch A    pymol/modules/web/__init__.py
    2484 :info:fetch A    pymol/modules/web/javascript
    2485 :info:fetch A    pymol/modules/web/javascript/json2.js
    2486 :info:fetch A    pymol/modules/web/javascript/pymol.js
    2487 :info:fetch A    pymol/modules/web/pymolhttpd.py
    2488 :info:fetch A    pymol/modules/web/examples
    2489 :info:fetch A    pymol/modules/web/examples/justhttpd.py
    2490 :info:fetch A    pymol/modules/web/examples/sample01
    2491 :info:fetch A    pymol/modules/web/examples/sample01/htdocs
    2492 :info:fetch A    pymol/modules/web/examples/sample01/htdocs/result.html
    2493 :info:fetch A    pymol/modules/web/examples/sample01/htdocs/index.html
    2494 :info:fetch A    pymol/modules/web/examples/sample01/htdocs/header.html
    2495 :info:fetch A    pymol/modules/web/examples/sample01/htdocs/api.html
    2496 :info:fetch A    pymol/modules/web/examples/sample01/start.pwg
    2497 :info:fetch A    pymol/modules/web/examples/sample02
    2498 :info:fetch A    pymol/modules/web/examples/sample02/htdocs
    2499 :info:fetch A    pymol/modules/web/examples/sample02/htdocs/index.html
    2500 :info:fetch A    pymol/modules/web/examples/sample02/start.pwg
    2501 :info:fetch A    pymol/modules/web/examples/sample11
    2502 :info:fetch A    pymol/modules/web/examples/sample11/index.html
    2503 :info:fetch A    pymol/modules/web/examples/sample11/start8081.pwg
    2504 :info:fetch A    pymol/modules/web/examples/sample03
    2505 :info:fetch A    pymol/modules/web/examples/sample03/htdocs
    2506 :info:fetch A    pymol/modules/web/examples/sample03/htdocs/index.html
    2507 :info:fetch A    pymol/modules/web/examples/sample03/start.pwg
    2508 :info:fetch A    pymol/modules/web/examples/sample12
    2509 :info:fetch A    pymol/modules/web/examples/sample12/json2.js
    2510 :info:fetch A    pymol/modules/web/examples/sample12/index.html
    2511 :info:fetch A    pymol/modules/web/examples/sample12/pymol.js
    2512 :info:fetch A    pymol/modules/web/examples/sample12/start8082.pwg
    2513 :info:fetch A    pymol/modules/web/examples/sample04
    2514 :info:fetch A    pymol/modules/web/examples/sample04/htdocs
    2515 :info:fetch A    pymol/modules/web/examples/sample04/htdocs/I5S.jpg
    2516 :info:fetch A    pymol/modules/web/examples/sample04/htdocs/R69.jpg
    2517 :info:fetch A    pymol/modules/web/examples/sample04/htdocs/pdbshow.js
    2518 :info:fetch A    pymol/modules/web/examples/sample04/htdocs/json2.js
    2519 :info:fetch A    pymol/modules/web/examples/sample04/htdocs/index.html
    2520 :info:fetch A    pymol/modules/web/examples/sample04/htdocs/626.jpg
    2521 :info:fetch A    pymol/modules/web/examples/sample04/htdocs/hash.js
    2522 :info:fetch A    pymol/modules/web/examples/sample04/start.pwg
    2523 :info:fetch A    pymol/modules/web/examples/sample13
    2524 :info:fetch A    pymol/modules/web/examples/sample13/index.html
    2525 :info:fetch A    pymol/modules/web/examples/sample13/jquery.js
    2526 :info:fetch A    pymol/modules/web/examples/sample13/start8083.pwg
    2527 :info:fetch A    pymol/modules/web/examples/sample14
    2528 :info:fetch A    pymol/modules/web/examples/sample14/json2.js
    2529 :info:fetch A    pymol/modules/web/examples/sample14/index.html
    2530 :info:fetch A    pymol/modules/web/examples/sample14/pymol.js
    2531 :info:fetch A    pymol/modules/web/examples/sample14/start8084.pwg
    2532 :info:fetch A    pymol/modules/web/examples/__init__.py
    2533 :info:fetch A    pymol/modules/web/examples/sample05
    2534 :info:fetch A    pymol/modules/web/examples/sample05/htdocs
    2535 :info:fetch A    pymol/modules/web/examples/sample05/htdocs/index.html
    2536 :info:fetch A    pymol/modules/web/examples/sample05/start.pwg
    2537 :info:fetch A    pymol/modules/web/examples/sample15
    2538 :info:fetch A    pymol/modules/web/examples/sample15/start8086.pwg
    2539 :info:fetch A    pymol/modules/web/examples/sample15/json2.js
    2540 :info:fetch A    pymol/modules/web/examples/sample15/index.html
    2541 :info:fetch A    pymol/modules/web/examples/sample15/pymol.js
    2542 :info:fetch A    pymol/modules/web/examples/sample15/start8085.pwg
    2543 :info:fetch A    pymol/modules/web/examples/sample06
    2544 :info:fetch A    pymol/modules/web/examples/sample06/htdocs
    2545 :info:fetch A    pymol/modules/web/examples/sample06/htdocs/json2.js
    2546 :info:fetch A    pymol/modules/web/examples/sample06/htdocs/index.html
    2547 :info:fetch A    pymol/modules/web/examples/sample06/htdocs/pymol.js
    2548 :info:fetch A    pymol/modules/web/examples/sample06/start.pwg
    2549 :info:fetch A    pymol/modules/web/examples/sample16
    2550 :info:fetch A    pymol/modules/web/examples/sample16/start8086.pwg
    2551 :info:fetch A    pymol/modules/web/examples/sample16/json2.js
    2552 :info:fetch A    pymol/modules/web/examples/sample16/index.html
    2553 :info:fetch A    pymol/modules/web/examples/sample16/pymol.js
    2554 :info:fetch A    pymol/modules/web/examples/sample07
    2555 :info:fetch A    pymol/modules/web/examples/sample07/htdocs
    2556 :info:fetch A    pymol/modules/web/examples/sample07/htdocs/test.html
    2557 :info:fetch A    pymol/modules/web/examples/sample07/htdocs/index.html
    2558 :info:fetch A    pymol/modules/web/examples/sample07/start.pwg
    2559 :info:fetch A    pymol/modules/web/examples/sample08
    2560 :info:fetch A    pymol/modules/web/examples/sample08/htdocs
    2561 :info:fetch A    pymol/modules/web/examples/sample08/htdocs/json2.js
    2562 :info:fetch A    pymol/modules/web/examples/sample08/htdocs/index.html
    2563 :info:fetch A    pymol/modules/web/examples/sample08/htdocs/pymol.js
    2564 :info:fetch A    pymol/modules/web/examples/sample08/start.pwg
    2565 :info:fetch A    pymol/modules/web/examples/data
    2566 :info:fetch A    pymol/modules/web/examples/data/2fzz.pdb
    2567 :info:fetch A    pymol/modules/web/examples/data/ref.pdb
    2568 :info:fetch A    pymol/modules/web/examples/data/2jdo.pdb.gz
    2569 :info:fetch A    pymol/modules/web/examples/data/map.ccp4
    2570 :info:fetch A    pymol/modules/web/examples/data/2j4z_AZ.pdb.gz
    2571 :info:fetch A    pymol/modules/web/examples/data/2j4z_BY.pdb.gz
    2572 :info:fetch A    pymol/modules/web/examples/data/2jdt.pdb.gz
    2573 :info:fetch A    pymol/modules/web/examples/data/1xh4.pdb.gz
    2574 :info:fetch A    pymol/modules/web/examples/data/1iqj.pdb
    2575 :info:fetch A    pymol/modules/web/examples/data/2c1a.pdb.gz
    2576 :info:fetch A    pymol/modules/web/examples/data/1xh9.pdb.gz
    2577 :info:fetch A    pymol/modules/web/examples/data/2g00.pdb
    2578 :info:fetch A    pymol/modules/web/examples/data/2owb.pdb.gz
    2579 :info:fetch A    pymol/modules/web/examples/index.html
    2580 :info:fetch A    pymol/modules/web/examples/content
    2581 :info:fetch A    pymol/modules/web/examples/content/pwg.html
    2582 :info:fetch A    pymol/modules/web/examples/content/summary.html
    2583 :info:fetch A    pymol/modules/web/examples/content/reference.html
    2584 :info:fetch A    pymol/modules/web/examples/content/running.html
    2585 :info:fetch A    pymol/modules/web/examples/content/SOP.html
    2586 :info:fetch A    pymol/modules/web/examples/content/mime1.jpg
    2587 :info:fetch A    pymol/modules/web/examples/content/mime2.jpg
    2588 :info:fetch A    pymol/modules/web/examples/content/server.html
    2589 :info:fetch A    pymol/modules/web/examples/content/requests.html
    2590 :info:fetch A    pymol/modules/sitecustomize.py
    2591 :info:fetch A    pymol/data
    2592 :info:fetch A    pymol/data/pymol
    2593 :info:fetch A    pymol/data/pymol/cmyk.png
    2594 :info:fetch A    pymol/data/pymol/matrices
    2595 :info:fetch A    pymol/data/pymol/matrices/BLOSUM62
    2596 :info:fetch A    pymol/data/pymol/hsv.ppm
    2597 :info:fetch A    pymol/data/pymol/splash.png
    2598 :info:fetch A    pymol/data/pmg_tk
    2599 :info:fetch A    pymol/data/pmg_tk/bitmaps
    2600 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder
    2601 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/aro65.xbm
    2602 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/aro66.xbm
    2603 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/aro67.xbm
    2604 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/cyc3.xbm
    2605 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/cyc4.xbm
    2606 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/cyc5.xbm
    2607 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/cyc6.xbm
    2608 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/cyc7.xbm
    2609 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/aro5.xbm
    2610 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/aro6.xbm
    2611 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/aro65.gif
    2612 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/aro66.gif
    2613 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/aro67.gif
    2614 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/cyc3.gif
    2615 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/cyc4.gif
    2616 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/cyc5.gif
    2617 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/cyc6.gif
    2618 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/cyc7.gif
    2619 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/aro5.gif
    2620 :info:fetch A    pymol/data/pmg_tk/bitmaps/builder/aro6.gif
    2621 :info:fetch A    pymol/data/xray
    2622 :info:fetch A    pymol/data/xray/atomformfactor5.dat
    2623 :info:fetch A    pymol/data/xray/spgbase.dat
    2624 :info:fetch A    pymol/data/xray/atomformfactor2.dat
    2625 :info:fetch A    pymol/data/demo
    2626 :info:fetch A    pymol/data/demo/cgo03.py
    2627 :info:fetch A    pymol/data/demo/1hpv.r3d
    2628 :info:fetch A    pymol/data/demo/1tii.pdb
    2629 :info:fetch A    pymol/data/demo/il2.pdb
    2630 :info:fetch A    pymol/data/demo/pept.pdb
    2631 :info:fetch A    pymol/data/demo/pept.pkl
    2632 :info:fetch A    pymol/data/chempy
    2633 :info:fetch A    pymol/data/chempy/fragments
    2634 :info:fetch A    pymol/data/chempy/fragments/ala.pkl
    2635 :info:fetch A    pymol/data/chempy/fragments/nt_thr.pkl
    2636 :info:fetch A    pymol/data/chempy/fragments/ct_arg.pkl
    2637 :info:fetch A    pymol/data/chempy/fragments/gluh.pkl
    2638 :info:fetch A    pymol/data/chempy/fragments/ct_phe.pkl
    2639 :info:fetch A    pymol/data/chempy/fragments/nt_hid.pkl
    2640 :info:fetch A    pymol/data/chempy/fragments/nt_hie.pkl
    2641 :info:fetch A    pymol/data/chempy/fragments/napthylene.pkl
    2642 :info:fetch A    pymol/data/chempy/fragments/lys.pkl
    2643 :info:fetch A    pymol/data/chempy/fragments/cyclobutane.pkl
    2644 :info:fetch A    pymol/data/chempy/fragments/ile.pkl
    2645 :info:fetch A    pymol/data/chempy/fragments/tyr.pkl
    2646 :info:fetch A    pymol/data/chempy/fragments/cycloheptane.pkl
    2647 :info:fetch A    pymol/data/chempy/fragments/gln.pkl
    2648 :info:fetch A    pymol/data/chempy/fragments/nt_hip.pkl
    2649 :info:fetch A    pymol/data/chempy/fragments/nt_asn.pkl
    2650 :info:fetch A    pymol/data/chempy/fragments/ct_thr.pkl
    2651 :info:fetch A    pymol/data/chempy/fragments/nt_val.pkl
    2652 :info:fetch A    pymol/data/chempy/fragments/cyclopentane.pkl
    2653 :info:fetch A    pymol/data/chempy/fragments/nt_asp.pkl
    2654 :info:fetch A    pymol/data/chempy/fragments/nt_his.pkl
    2655 :info:fetch A    pymol/data/chempy/fragments/nt_leu.pkl
    2656 :info:fetch A    pymol/data/chempy/fragments/glu.pkl
    2657 :info:fetch A    pymol/data/chempy/fragments/trifluoromethane.pkl
    2658 :info:fetch A    pymol/data/chempy/fragments/ct_hid.pkl
    2659 :info:fetch A    pymol/data/chempy/fragments/gly.pkl
    2660 :info:fetch A    pymol/data/chempy/fragments/ct_hie.pkl
    2661 :info:fetch A    pymol/data/chempy/fragments/nt_asph.pkl
    2662 :info:fetch A    pymol/data/chempy/fragments/indane.pkl
    2663 :info:fetch A    pymol/data/chempy/fragments/nt_ala.pkl
    2664 :info:fetch A    pymol/data/chempy/fragments/pro.pkl
    2665 :info:fetch A    pymol/data/chempy/fragments/formamide.pkl
    2666 :info:fetch A    pymol/data/chempy/fragments/trp.pkl
    2667 :info:fetch A    pymol/data/chempy/fragments/ct_hip.pkl
    2668 :info:fetch A    pymol/data/chempy/fragments/cyclopentadiene.pkl
    2669 :info:fetch A    pymol/data/chempy/fragments/ct_asn.pkl
    2670 :info:fetch A    pymol/data/chempy/fragments/nt_lys.pkl
    2671 :info:fetch A    pymol/data/chempy/fragments/ct_val.pkl
    2672 :info:fetch A    pymol/data/chempy/fragments/ct_his.pkl
    2673 :info:fetch A    pymol/data/chempy/fragments/acetylene.pkl
    2674 :info:fetch A    pymol/data/chempy/fragments/ct_asp.pkl
    2675 :info:fetch A    pymol/data/chempy/fragments/nt_ile.pkl
    2676 :info:fetch A    pymol/data/chempy/fragments/sulfone.pkl
    2677 :info:fetch A    pymol/data/chempy/fragments/ct_leu.pkl
    2678 :info:fetch A    pymol/data/chempy/fragments/nt_tyr.pkl
    2679 :info:fetch A    pymol/data/chempy/fragments/nt_gln.pkl
    2680 :info:fetch A    pymol/data/chempy/fragments/ct_ala.pkl
    2681 :info:fetch A    pymol/data/chempy/fragments/met.pkl
    2682 :info:fetch A    pymol/data/chempy/fragments/nt_lysn.pkl
    2683 :info:fetch A    pymol/data/chempy/fragments/nt_glu.pkl
    2684 :info:fetch A    pymol/data/chempy/fragments/nt_argn.pkl
    2685 :info:fetch A    pymol/data/chempy/fragments/ser.pkl
    2686 :info:fetch A    pymol/data/chempy/fragments/nt_gly.pkl
    2687 :info:fetch A    pymol/data/chempy/fragments/ct_lys.pkl
    2688 :info:fetch A    pymol/data/chempy/fragments/cyclopropane.pkl
    2689 :info:fetch A    pymol/data/chempy/fragments/cys.pkl
    2690 :info:fetch A    pymol/data/chempy/fragments/ct_ile.pkl
    2691 :info:fetch A    pymol/data/chempy/fragments/nt_gluh.pkl
    2692 :info:fetch A    pymol/data/chempy/fragments/nt_pro.pkl
    2693 :info:fetch A    pymol/data/chempy/fragments/cyclohexane.pkl
    2694 :info:fetch A    pymol/data/chempy/fragments/phosphite.pkl
    2695 :info:fetch A    pymol/data/chempy/fragments/ct_tyr.pkl
    2696 :info:fetch A    pymol/data/chempy/fragments/nt_trp.pkl
    2697 :info:fetch A    pymol/data/chempy/fragments/ct_gln.pkl
    2698 :info:fetch A    pymol/data/chempy/fragments/methanol.pkl
    2699 :info:fetch A    pymol/data/chempy/fragments/arg.pkl
    2700 :info:fetch A    pymol/data/chempy/fragments/cyanide.pkl
    2701 :info:fetch A    pymol/data/chempy/fragments/benzocycloheptane.pkl
    2702 :info:fetch A    pymol/data/chempy/fragments/phe.pkl
    2703 :info:fetch A    pymol/data/chempy/fragments/ethylene.pkl
    2704 :info:fetch A    pymol/data/chempy/fragments/ct_glu.pkl
    2705 :info:fetch A    pymol/data/chempy/fragments/nhh.pkl
    2706 :info:fetch A    pymol/data/chempy/fragments/butane.pkl
    2707 :info:fetch A    pymol/data/chempy/fragments/ct_asph.pkl
    2708 :info:fetch A    pymol/data/chempy/fragments/ct_gly.pkl
    2709 :info:fetch A    pymol/data/chempy/fragments/methane.pkl
    2710 :info:fetch A    pymol/data/chempy/fragments/ct_pro.pkl
    2711 :info:fetch A    pymol/data/chempy/fragments/benzene.pkl
    2712 :info:fetch A    pymol/data/chempy/fragments/nt_met.pkl
    2713 :info:fetch A    pymol/data/chempy/fragments/ace.pkl
    2714 :info:fetch A    pymol/data/chempy/fragments/nt_ser.pkl
    2715 :info:fetch A    pymol/data/chempy/fragments/peptide.pkl
    2716 :info:fetch A    pymol/data/chempy/fragments/ct_trp.pkl
    2717 :info:fetch A    pymol/data/chempy/fragments/asph.pkl
    2718 :info:fetch A    pymol/data/chempy/fragments/nitro.pkl
    2719 :info:fetch A    pymol/data/chempy/fragments/thr.pkl
    2720 :info:fetch A    pymol/data/chempy/fragments/nt_cys.pkl
    2721 :info:fetch A    pymol/data/chempy/fragments/realtime.pkl
    2722 :info:fetch A    pymol/data/chempy/fragments/formaldehyde.pkl
    2723 :info:fetch A    pymol/data/chempy/fragments/hid.pkl
    2724 :info:fetch A    pymol/data/chempy/fragments/hie.pkl
    2725 :info:fetch A    pymol/data/chempy/fragments/nt_arg.pkl
    2726 :info:fetch A    pymol/data/chempy/fragments/ct_lysn.pkl
    2727 :info:fetch A    pymol/data/chempy/fragments/ct_met.pkl
    2728 :info:fetch A    pymol/data/chempy/fragments/ct_argn.pkl
    2729 :info:fetch A    pymol/data/chempy/fragments/nt_phe.pkl
    2730 :info:fetch A    pymol/data/chempy/fragments/formic.pkl
    2731 :info:fetch A    pymol/data/chempy/fragments/ct_ser.pkl
    2732 :info:fetch A    pymol/data/chempy/fragments/nme.pkl
    2733 :info:fetch A    pymol/data/chempy/fragments/hip.pkl
    2734 :info:fetch A    pymol/data/chempy/fragments/asn.pkl
    2735 :info:fetch A    pymol/data/chempy/fragments/val.pkl
    2736 :info:fetch A    pymol/data/chempy/fragments/his.pkl
    2737 :info:fetch A    pymol/data/chempy/fragments/asp.pkl
    2738 :info:fetch A    pymol/data/chempy/fragments/ct_cys.pkl
    2739 :info:fetch A    pymol/data/chempy/fragments/lysn.pkl
    2740 :info:fetch A    pymol/data/chempy/fragments/leu.pkl
    2741 :info:fetch A    pymol/data/chempy/fragments/ct_gluh.pkl
    2742 :info:fetch A    pymol/data/chempy/fragments/argn.pkl
    2743 :info:fetch A    pymol/data/chempy/water.pdb
    2744 :info:fetch A    pymol/data/chempy/sidechains
    2745 :info:fetch A    pymol/data/chempy/sidechains/generate1.py
    2746 :info:fetch A    pymol/data/chempy/sidechains/generate2.py
    2747 :info:fetch A    pymol/data/chempy/sidechains/sc_bb_dep.pkl
    2748 :info:fetch A    pymol/data/chempy/sidechains/sc_bb_dep.py
    2749 :info:fetch A    pymol/data/chempy/sidechains/sc_bb_ind.pkl
    2750 :info:fetch A    pymol/data/chempy/sidechains/sc_bb_ind.py
    2751 :info:fetch A    pymol/data/chempy/sidechains/sc_library.pkl
    2752 :info:fetch A    pymol/data/chempy/tinker
    2753 :info:fetch A    pymol/data/chempy/tinker/Makefile.delsci
    2754 :info:fetch A    pymol/data/chempy/tinker/make99_simple.py
    2755 :info:fetch A    pymol/data/chempy/tinker/parm_simple.dat
    2756 :info:fetch A    pymol/data/chempy/tinker/parm99_simple.dat
    2757 :info:fetch A    pymol/data/chempy/tinker/chempy.prm
    2758 :info:fetch A    pymol/data/chempy/tinker/parm94.dat
    2759 :info:fetch A    pymol/data/chempy/tinker/parm94_rsm.dat
    2760 :info:fetch A    pymol/data/chempy/tinker/parm96.dat
    2761 :info:fetch A    pymol/data/chempy/tinker/parm96_rsm.dat
    2762 :info:fetch A    pymol/data/chempy/tinker/parm99.dat
    2763 :info:fetch A    pymol/data/chempy/tinker/make_simple.py
    2764 :info:fetch A    pymol/data/chempy/tinker/parm_simple.inp
    2765 :info:fetch A    pymol/data/chempy/tinker/parm99_wld.dat
    2766 :info:fetch A    pymol/data/shaders
    2767 :info:fetch A    pymol/data/shaders/bg.vs
    2768 :info:fetch A    pymol/data/shaders/indicator.fs
    2769 :info:fetch A    pymol/data/shaders/screen.fs
    2770 :info:fetch A    pymol/data/shaders/labelscreen.fs
    2771 :info:fetch A    pymol/data/shaders/label.fs
    2772 :info:fetch A    pymol/data/shaders/defaultscreen.fs
    2773 :info:fetch A    pymol/data/shaders/default.fs
    2774 :info:fetch A    pymol/data/shaders/sphere.fs
    2775 :info:fetch A    pymol/data/shaders/volume.vs
    2776 :info:fetch A    pymol/data/shaders/indicator.vs
    2777 :info:fetch A    pymol/data/shaders/default_es2.fs
    2778 :info:fetch A    pymol/data/shaders/screen.vs
    2779 :info:fetch A    pymol/data/shaders/ramp.fs
    2780 :info:fetch A    pymol/data/shaders/labelscreen.vs
    2781 :info:fetch A    pymol/data/shaders/label.vs
    2782 :info:fetch A    pymol/data/shaders/spheredirect.vs
    2783 :info:fetch A    pymol/data/shaders/sphere_arb_fs.fs
    2784 :info:fetch A    pymol/data/shaders/anaglyph.fs
    2785 :info:fetch A    pymol/data/shaders/default.vs
    2786 :info:fetch A    pymol/data/shaders/defaultscreen.vs
    2787 :info:fetch A    pymol/data/shaders/compute_fog_color.fs
    2788 :info:fetch A    pymol/data/shaders/sphere.vs
    2789 :info:fetch A    pymol/data/shaders/compute_color_for_light.fs
    2790 :info:fetch A    pymol/data/shaders/cylinder.fs
    2791 :info:fetch A    pymol/data/shaders/default_es.fs
    2792 :info:fetch A    pymol/data/shaders/anaglyph_header.fs
    2793 :info:fetch A    pymol/data/shaders/default_es2.vs
    2794 :info:fetch A    pymol/data/shaders/ramp.vs
    2795 :info:fetch A    pymol/data/shaders/cylinder_no_ff.fs
    2796 :info:fetch A    pymol/data/shaders/shadertext.txt
    2797 :info:fetch A    pymol/data/shaders/bg.fs
    2798 :info:fetch A    pymol/data/shaders/cylinder.vs
    2799 :info:fetch A    pymol/data/shaders/default_es.vs
    2800 :info:fetch A    pymol/data/shaders/call_compute_color_for_light.fs
    2801 :info:fetch A    pymol/data/shaders/sphere_arb_vs.vs
    2802 :info:fetch A    pymol/data/shaders/volume.fs
    2803 :info:fetch A    pymol/data/tut
    2804 :info:fetch A    pymol/data/tut/1hpv.pdb
    2805 :info:fetch A    pymol/NEWS
    2806 :info:fetch A    pymol/examples
    2807 :info:fetch A    pymol/examples/devel
    2808 :info:fetch A    pymol/examples/devel/hole_vmd_tri.pym
    2809 :info:fetch A    pymol/examples/devel/cgo_axes.py
    2810 :info:fetch A    pymol/examples/devel/cgo_label_hack.py
    2811 :info:fetch A    pymol/examples/devel/sd_annotate.pml
    2812 :info:fetch A    pymol/examples/devel/count_molecules.py
    2813 :info:fetch A    pymol/examples/devel/particle01.py
    2814 :info:fetch A    pymol/examples/devel/gl02.py
    2815 :info:fetch A    pymol/examples/devel/cgo_3Dtext01.py
    2816 :info:fetch A    pymol/examples/devel/chempy_model02.py
    2817 :info:fetch A    pymol/examples/devel/xmlrpc02.py
    2818 :info:fetch A    pymol/examples/devel/importing.py
    2819 :info:fetch A    pymol/examples/devel/my_ext_gui.py
    2820 :info:fetch A    pymol/examples/devel/cgo01.py
    2821 :info:fetch A    pymol/examples/devel/cgo03.py
    2822 :info:fetch A    pymol/examples/devel/cgo05.py
    2823 :info:fetch A    pymol/examples/devel/pick_wiz.py
    2824 :info:fetch A    pymol/examples/devel/cgo07.py
    2825 :info:fetch A    pymol/examples/devel/sele_wiz.py
    2826 :info:fetch A    pymol/examples/devel/scenes_to_movie01.pml
    2827 :info:fetch A    pymol/examples/devel/webgui02.py
    2828 :info:fetch A    pymol/examples/devel/syncmol.py
    2829 :info:fetch A    pymol/examples/devel/cam2crd.pym
    2830 :info:fetch A    pymol/examples/devel/brick01.py
    2831 :info:fetch A    pymol/examples/devel/extend_demo01.py
    2832 :info:fetch A    pymol/examples/devel/mutate01.pml
    2833 :info:fetch A    pymol/examples/devel/link_demo.py
    2834 :info:fetch A    pymol/examples/devel/mutate02.py
    2835 :info:fetch A    pymol/examples/devel/gl01.py
    2836 :info:fetch A    pymol/examples/devel/particle02.py
    2837 :info:fetch A    pymol/examples/devel/gl03.py
    2838 :info:fetch A    pymol/examples/devel/tkwindow.py
    2839 :info:fetch A    pymol/examples/devel/chempy_model01.py
    2840 :info:fetch A    pymol/examples/devel/xmlrpc01.py
    2841 :info:fetch A    pymol/examples/devel/demo.sdf
    2842 :info:fetch A    pymol/examples/devel/chempy_model03.py
    2843 :info:fetch A    pymol/examples/devel/cgo02.py
    2844 :info:fetch A    pymol/examples/devel/cgo04.py
    2845 :info:fetch A    pymol/examples/devel/start_pymol.py
    2846 :info:fetch A    pymol/examples/devel/cgo06.py
    2847 :info:fetch A    pymol/examples/devel/cgo08.py
    2848 :info:fetch A    pymol/examples/devel/povray01.py
    2849 :info:fetch A    pymol/examples/devel/webgui01.py
    2850 :info:fetch A    pymol/examples/devel/click_ordered_list.py
    2851 :info:fetch A    pymol/examples/devel/membrane.py
    2852 :info:fetch A    pymol/examples/devel/cgo_plane.py
    2853 :info:fetch A    pymol/examples/chempy
    2854 :info:fetch A    pymol/examples/chempy/generate_mmff.py
    2855 :info:fetch A    pymol/examples/chempy/generate_amber.py
    2856 :info:fetch A    pymol/examples/cookbook
    2857 :info:fetch A    pymol/examples/cookbook/build_peptide.py
    2858 :info:fetch A    pymol/examples/cookbook/dali.py
    2859 :info:fetch A    pymol/examples/cookbook/ss_xfer.pml
    2860 :info:fetch A    pymol/examples/cookbook/contact.pml
    2861 :info:fetch A    pymol/examples/cookbook/packing.pml
    2862 :info:fetch A    pymol/examples/cookbook/seq_match_sele.pml
    2863 :info:fetch A    pymol/examples/cookbook/multiclip_ray.pml
    2864 :info:fetch A    pymol/examples/cookbook/packsurf.pml
    2865 :info:fetch A    pymol/examples/cookbook/density.pml
    2866 :info:fetch A    pymol/examples/cookbook/groel_es.pml
    2867 :info:fetch A    pymol/examples/cookbook/ribosome.pml
    2868 :info:fetch A    pymol/examples/cookbook/area_diff.pml
    2869 :info:fetch A    pymol/examples/cookbook/scenes2movie.pml
    2870 :info:fetch A    pymol/examples/cookbook/symsph.py
    2871 :info:fetch A    pymol/examples/cookbook/ref_frame.pml
    2872 :info:fetch A    pymol/examples/launching
    2873 :info:fetch A    pymol/examples/launching/launch.py
    2874 :info:fetch A    pymol/examples/launching/launch_viewer1.py
    2875 :info:fetch A    pymol/examples/launching/launch_viewer2.py
    2876 :info:fetch A    pymol/examples/launching/launch_demo.py
    2877 :info:fetch A    pymol/examples/launching/launch_no_tk.py
    2878 :info:fetch A    pymol/examples/launching/README
    2879 :info:fetch A    pymol/examples/package
    2880 :info:fetch A    pymol/examples/package/redhat
    2881 :info:fetch A    pymol/examples/package/redhat/pymol-0.96-1.rh70.py152.spec
    2882 :info:fetch A    pymol/examples/package/redhat/pymol-0.96-1.rh62.py152.spec
    2883 :info:fetch A    pymol/examples/package/redhat/pymol-0.93-1.rh72.py21.spec
    2884 :info:fetch A    pymol/examples/package/redhat/pymol-0.93-1.rh80.py22.spec
    2885 :info:fetch A    pymol/examples/package/redhat/pymol-0.93-1.rh90.py22.spec
    2886 :info:fetch A    pymol/examples/package/redhat/pymol-0.93-1.rh73.py22.spec
    2887 :info:fetch A    pymol/examples/package/redhat/pymol-0.93-1.rh70.py152.spec
    2888 :info:fetch A    pymol/examples/package/redhat/pymol-0.96-1.rh72.py21.spec
    2889 :info:fetch A    pymol/examples/package/redhat/pymol-0.96-1.rh80.py22.spec
    2890 :info:fetch A    pymol/examples/package/redhat/pymol-0.93-1.rh62.py152.spec
    2891 :info:fetch A    pymol/examples/package/redhat/pymol-0.96-1.rh90.py22.spec
    2892 :info:fetch A    pymol/examples/package/redhat/pymol-0.96-1.rh73.py22.spec
    2893 :info:fetch Exported revision 4074.
    2894 :debug:fetch Privilege de-escalation not attempted as not running as root.
    2895 :debug:checksum checksum phase started at Sun Oct 19 16:56:23 AEDT 2014
    2896 :notice:checksum --->  Verifying checksums for pymol
    2897 :debug:checksum Executing org.macports.checksum (pymol)
    2898 :debug:checksum Privilege de-escalation not attempted as not running as root.
    2899 :debug:extract extract phase started at Sun Oct 19 16:56:23 AEDT 2014
    2900 :notice:extract --->  Extracting pymol
    2901 :debug:extract Executing org.macports.extract (pymol)
    2902 :debug:extract Privilege de-escalation not attempted as not running as root.
    2903 :debug:patch patch phase started at Sun Oct 19 16:56:23 AEDT 2014
    2904 :debug:patch Executing org.macports.patch (pymol)
    2905 :notice:patch --->  Applying patches to pymol
    2906 :info:patch --->  Applying setup_py.diff
    2907 :debug:patch Environment:
    2908 CC_PRINT_OPTIONS='YES'
    2909 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
    2910 CPATH='/opt/local/include'
    2911 LIBRARY_PATH='/opt/local/lib'
    2912 MACOSX_DEPLOYMENT_TARGET='10.9'
    2913 :debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0'
    2914 :debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol/files/setup_py.diff'
    2915 :info:patch patching file setup.py
    2916 :info:patch --->  Applying pymol_shell.diff
    2917 :debug:patch Environment:
    2918 CC_PRINT_OPTIONS='YES'
    2919 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
    2920 CPATH='/opt/local/include'
    2921 LIBRARY_PATH='/opt/local/lib'
    2922 MACOSX_DEPLOYMENT_TARGET='10.9'
    2923 :debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0'
    2924 :debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol/files/pymol_shell.diff'
    2925 :info:patch patching file setup/pymol_macports
    2926 :info:patch --->  Applying pmg_tk_platform.patch
    2927 :debug:patch Environment:
    2928 CC_PRINT_OPTIONS='YES'
    2929 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
    2930 CPATH='/opt/local/include'
    2931 LIBRARY_PATH='/opt/local/lib'
    2932 MACOSX_DEPLOYMENT_TARGET='10.9'
    2933 :debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0'
    2934 :debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol/files/pmg_tk_platform.patch'
    2935 :info:patch patching file modules/pmg_tk/skins/normal/__init__.py
    2936 :info:patch Hunk #1 succeeded at 259 (offset 23 lines).
    2937 :info:patch Hunk #2 succeeded at 278 (offset 23 lines).
    2938 :info:patch Hunk #3 succeeded at 305 (offset 23 lines).
    2939 :info:patch patching file modules/pmg_tk/PMGApp.py
    2940 :info:patch Hunk #1 succeeded at 203 (offset 19 lines).
    2941 :info:patch Hunk #2 succeeded at 221 (offset 19 lines).
    2942 :info:patch --->  Applying apbs-psize.patch
    2943 :debug:patch Environment:
    2944 CC_PRINT_OPTIONS='YES'
    2945 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
    2946 CPATH='/opt/local/include'
    2947 LIBRARY_PATH='/opt/local/lib'
    2948 MACOSX_DEPLOYMENT_TARGET='10.9'
    2949 :debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0'
    2950 :debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol/files/apbs-psize.patch'
    2951 :info:patch patching file modules/pmg_tk/startup/apbs_tools.py
    2952 :info:patch --->  Applying apbs_tkinter.patch
    2953 :debug:patch Environment:
    2954 CC_PRINT_OPTIONS='YES'
    2955 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
    2956 CPATH='/opt/local/include'
    2957 LIBRARY_PATH='/opt/local/lib'
    2958 MACOSX_DEPLOYMENT_TARGET='10.9'
    2959 :debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0'
    2960 :debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol/files/apbs_tkinter.patch'
    2961 :info:patch patching file modules/pmg_tk/startup/apbs_tools.py
    2962 :info:patch Hunk #12 succeeded at 2284 (offset 4 lines).
    2963 :info:patch Hunk #13 succeeded at 2335 (offset 4 lines).
    2964 :info:patch Hunk #14 succeeded at 2352 (offset 4 lines).
    2965 :info:patch Hunk #15 succeeded at 2372 (offset 4 lines).
    2966 :info:patch Hunk #16 succeeded at 2394 (offset 4 lines).
    2967 :info:patch --->  Applying pymol-clang.diff
    2968 :debug:patch Environment:
    2969 CC_PRINT_OPTIONS='YES'
    2970 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
    2971 CPATH='/opt/local/include'
    2972 LIBRARY_PATH='/opt/local/lib'
    2973 MACOSX_DEPLOYMENT_TARGET='10.9'
    2974 :debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0'
    2975 :debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol/files/pymol-clang.diff'
    2976 :info:patch patching file layer0/ShaderMgr.c
    2977 :info:patch patching file layer0/Map.c
    2978 :info:patch patching file layer1/Basis.c
    2979 :info:patch patching file layer1/CGO.c
    2980 :info:patch patching file layer1/Ortho.c
    2981 :info:patch patching file layer1/P.c
    2982 :info:patch patching file layer1/Extrude.c
    2983 :info:patch patching file layer1/Scene.c
    2984 :info:patch patching file layer1/Control.c
    2985 :info:patch patching file layer2/RepSphere.c
    2986 :info:patch patching file layer2/ObjectMolecule2.c
    2987 :info:patch patching file layer2/RepDot.c
    2988 :info:patch patching file layer2/RepSurface.c
    2989 :info:patch patching file layer2/RepCartoon.c
    2990 :info:patch patching file layer2/ObjectMolecule.c
    2991 :info:patch patching file layer3/Selector.c
    2992 :info:patch patching file layer3/Executive.c
    2993 :info:patch patching file layer3/PlugIOManager.c
    2994 :info:patch patching file layer4/Cmd.c
    2995 :info:patch patching file contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp
    2996 :info:patch patching file contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp
    2997 :info:patch patching file contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c
    2998 :info:patch patching file contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c
    2999 :info:patch patching file contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c
    3000 :info:patch patching file contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp
    3001 :info:patch patching file contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp
    3002 :info:patch patching file modules/cealign/src/tnt/tnt_fortran_array1d.h
    3003 :info:patch patching file modules/cealign/src/tnt/tnt_array1d.h
    3004 :debug:patch Executing proc-post-org.macports.patch-patch-0
    3005 :info:patch --->  Patching setup.py: s|@PREFIX@|/opt/local|g
    3006 :debug:patch Executing reinplace: /usr/bin/sed s|@PREFIX@|/opt/local|g < /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup.py >@ file10 2>@stderr
    3007 :debug:patch euid/egid changed to: 0/0
    3008 :debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup.py to macports
    3009 :debug:patch euid/egid changed to: 502/501
    3010 :debug:patch euid/egid changed to: 0/0
    3011 :debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup.py
    3012 :debug:patch euid/egid changed to: 502/501
    3013 :info:patch --->  Patching pymol_macports: s|@@PYTHON_PKGDIR@@|/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages|g
    3014 :debug:patch Executing reinplace: /usr/bin/sed s|@@PYTHON_PKGDIR@@|/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages|g < /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports >@ file10 2>@stderr
    3015 :debug:patch euid/egid changed to: 0/0
    3016 :debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports to macports
    3017 :debug:patch euid/egid changed to: 502/501
    3018 :debug:patch euid/egid changed to: 0/0
    3019 :debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports
    3020 :debug:patch euid/egid changed to: 502/501
    3021 :info:patch --->  Patching pymol_macports: s|@@PYTHON_BINARY@@|/opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7|g
    3022 :debug:patch Executing reinplace: /usr/bin/sed s|@@PYTHON_BINARY@@|/opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7|g < /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports >@ file10 2>@stderr
    3023 :debug:patch euid/egid changed to: 0/0
    3024 :debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports to macports
    3025 :debug:patch euid/egid changed to: 502/501
    3026 :debug:patch euid/egid changed to: 0/0
    3027 :debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports
    3028 :debug:patch euid/egid changed to: 502/501
    3029 :info:patch --->  Patching setup.py: s|"-O3",|"-O3", "-g",|g
    3030 :debug:patch Executing reinplace: /usr/bin/sed {s|"-O3",|"-O3", "-g",|g} < /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup.py >@ file10 2>@stderr
    3031 :debug:patch euid/egid changed to: 0/0
    3032 :debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup.py to macports
    3033 :debug:patch euid/egid changed to: 502/501
    3034 :debug:patch euid/egid changed to: 0/0
    3035 :debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup.py
    3036 :debug:patch euid/egid changed to: 502/501
    3037 :debug:patch Privilege de-escalation not attempted as not running as root.
    3038 :debug:configure configure phase started at Sun Oct 19 16:56:24 AEDT 2014
    3039 :notice:configure --->  Configuring pymol
    3040 :debug:configure Using compiler 'Xcode Clang'
    3041 :debug:configure Executing proc-pre-org.macports.configure-configure-0
    3042 :debug:configure Found Dependency: path: /usr/bin filename: svn regex: ^svn$
    3043 :debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: python27 freeglut freetype glew libpng mesa py27-numpy py27-pmw py27-scipy py27-tkinter xdpyinfo
    3044 :debug:configure Ignoring active_variants requirement for tcl because source-type install only considers depends_fetch depends_extract depends_lib depends_build depends_run and those do not contain tcl
    3045 :debug:configure Ignoring active_variants requirement for tk because source-type install only considers depends_fetch depends_extract depends_lib depends_build depends_run and those do not contain tk
    3046 :debug:configure Executing org.macports.configure (pymol)
    3047 :debug:configure Privilege de-escalation not attempted as not running as root.
    3048 :debug:build build phase started at Sun Oct 19 16:56:24 AEDT 2014
    3049 :notice:build --->  Building pymol
    3050 :debug:build Executing proc-pre-org.macports.build-build-0
    3051 :debug:build Executing org.macports.build (pymol)
    3052 :debug:build Privilege de-escalation not attempted as not running as root.
    3053 :debug:destroot destroot phase started at Sun Oct 19 16:56:24 AEDT 2014
    3054 :notice:destroot --->  Staging pymol into destroot
    3055 :debug:destroot Can't run destroot under sudo without elevated privileges (due to mtree).
    3056 :debug:destroot Run destroot without sudo to avoid root privileges.
    3057 :debug:destroot Going to escalate privileges back to root.
    3058 :debug:destroot euid changed to: 0. egid changed to: 0.
    3059 :info:destroot ./usr missing (created)
    3060 :info:destroot . missing (directory not created: File exists)
    3061 :info:destroot ./Applications missing (created)
    3062 :info:destroot ./Developer missing (created)
    3063 :info:destroot ./Library missing (created)
    3064 :info:destroot ./bin missing (created)
    3065 :info:destroot ./etc missing (created)
    3066 :info:destroot ./include missing (created)
    3067 :info:destroot ./lib missing (created)
    3068 :info:destroot ./lib/pkgconfig missing (created)
    3069 :info:destroot ./libexec missing (created)
    3070 :info:destroot ./sbin missing (created)
    3071 :info:destroot ./share missing (created)
    3072 :info:destroot ./share/info missing (created)
    3073 :info:destroot ./share/man missing (created)
    3074 :info:destroot ./share/man/cat1 missing (created)
    3075 :info:destroot ./share/man/cat2 missing (created)
    3076 :info:destroot ./share/man/cat3 missing (created)
    3077 :info:destroot ./share/man/cat4 missing (created)
    3078 :info:destroot ./share/man/cat5 missing (created)
    3079 :info:destroot ./share/man/cat6 missing (created)
    3080 :info:destroot ./share/man/cat7 missing (created)
    3081 :info:destroot ./share/man/cat8 missing (created)
    3082 :info:destroot ./share/man/cat9 missing (created)
    3083 :info:destroot ./share/man/catl missing (created)
    3084 :info:destroot ./share/man/catn missing (created)
    3085 :info:destroot ./share/man/man1 missing (created)
    3086 :info:destroot ./share/man/man2 missing (created)
    3087 :info:destroot ./share/man/man3 missing (created)
    3088 :info:destroot ./share/man/man4 missing (created)
    3089 :info:destroot ./share/man/man5 missing (created)
    3090 :info:destroot ./share/man/man6 missing (created)
    3091 :info:destroot ./share/man/man7 missing (created)
    3092 :info:destroot ./share/man/man8 missing (created)
    3093 :info:destroot ./share/man/man9 missing (created)
    3094 :info:destroot ./share/man/manl missing (created)
    3095 :info:destroot ./share/man/mann missing (created)
    3096 :info:destroot ./share/nls missing (created)
    3097 :info:destroot ./share/nls/C missing (created)
    3098 :info:destroot ./share/nls/af_ZA.ISO8859-1 missing (created)
    3099 :info:destroot ./share/nls/af_ZA.ISO8859-15 missing (created)
    3100 :info:destroot ./share/nls/bg_BG.CP1251 missing (created)
    3101 :info:destroot ./share/nls/cs_CZ.ISO8859-2 missing (created)
    3102 :info:destroot ./share/nls/da_DK.ISO8859-1 missing (created)
    3103 :info:destroot ./share/nls/da_DK.ISO8859-15 missing (created)
    3104 :info:destroot ./share/nls/de_AT.ISO8859-1 missing (created)
    3105 :info:destroot ./share/nls/de_AT.ISO8859-15 missing (created)
    3106 :info:destroot ./share/nls/de_CH.ISO8859-1 missing (created)
    3107 :info:destroot ./share/nls/de_CH.ISO8859-15 missing (created)
    3108 :info:destroot ./share/nls/de_DE.ISO8859-1 missing (created)
    3109 :info:destroot ./share/nls/de_DE.ISO8859-15 missing (created)
    3110 :info:destroot ./share/nls/el_GR.ISO8859-7 missing (created)
    3111 :info:destroot ./share/nls/en_AU.ISO8859-1 missing (created)
    3112 :info:destroot ./share/nls/en_AU.ISO8859-15 missing (created)
    3113 :info:destroot ./share/nls/en_AU.US-ASCII missing (created)
    3114 :info:destroot ./share/nls/en_CA.ISO8859-1 missing (created)
    3115 :info:destroot ./share/nls/en_CA.ISO8859-15 missing (created)
    3116 :info:destroot ./share/nls/en_CA.US-ASCII missing (created)
    3117 :info:destroot ./share/nls/en_GB.ISO8859-1 missing (created)
    3118 :info:destroot ./share/nls/en_GB.ISO8859-15 missing (created)
    3119 :info:destroot ./share/nls/en_GB.US-ASCII missing (created)
    3120 :info:destroot ./share/nls/en_NZ.ISO8859-1 missing (created)
    3121 :info:destroot ./share/nls/en_NZ.ISO8859-15 missing (created)
    3122 :info:destroot ./share/nls/en_NZ.US-ASCII missing (created)
    3123 :info:destroot ./share/nls/en_US.ISO8859-1 missing (created)
    3124 :info:destroot ./share/nls/en_US.ISO8859-15 missing (created)
    3125 :info:destroot ./share/nls/es_ES.ISO8859-1 missing (created)
    3126 :info:destroot ./share/nls/es_ES.ISO8859-15 missing (created)
    3127 :info:destroot ./share/nls/et_EE.ISO8859-15 missing (created)
    3128 :info:destroot ./share/nls/fi_FI.ISO8859-1 missing (created)
    3129 :info:destroot ./share/nls/fi_FI.ISO8859-15 missing (created)
    3130 :info:destroot ./share/nls/fr_BE.ISO8859-1 missing (created)
    3131 :info:destroot ./share/nls/fr_BE.ISO8859-15 missing (created)
    3132 :info:destroot ./share/nls/fr_CA.ISO8859-1 missing (created)
    3133 :info:destroot ./share/nls/fr_CA.ISO8859-15 missing (created)
    3134 :info:destroot ./share/nls/fr_CH.ISO8859-1 missing (created)
    3135 :info:destroot ./share/nls/fr_CH.ISO8859-15 missing (created)
    3136 :info:destroot ./share/nls/fr_FR.ISO8859-1 missing (created)
    3137 :info:destroot ./share/nls/fr_FR.ISO8859-15 missing (created)
    3138 :info:destroot ./share/nls/hi_IN.ISCII-DEV missing (created)
    3139 :info:destroot ./share/nls/hr_HR.ISO8859-2 missing (created)
    3140 :info:destroot ./share/nls/hu_HU.ISO8859-2 missing (created)
    3141 :info:destroot ./share/nls/is_IS.ISO8859-1 missing (created)
    3142 :info:destroot ./share/nls/is_IS.ISO8859-15 missing (created)
    3143 :info:destroot ./share/nls/it_CH.ISO8859-1 missing (created)
    3144 :info:destroot ./share/nls/it_CH.ISO8859-15 missing (created)
    3145 :info:destroot ./share/nls/it_IT.ISO8859-1 missing (created)
    3146 :info:destroot ./share/nls/it_IT.ISO8859-15 missing (created)
    3147 :info:destroot ./share/nls/ja_JP.SJIS missing (created)
    3148 :info:destroot ./share/nls/ja_JP.eucJP missing (created)
    3149 :info:destroot ./share/nls/ko_KR.eucKR missing (created)
    3150 :info:destroot ./share/nls/la_LN.ISO8859-1 missing (created)
    3151 :info:destroot ./share/nls/la_LN.ISO8859-15 missing (created)
    3152 :info:destroot ./share/nls/la_LN.ISO8859-2 missing (created)
    3153 :info:destroot ./share/nls/la_LN.ISO8859-4 missing (created)
    3154 :info:destroot ./share/nls/la_LN.US-ASCII missing (created)
    3155 :info:destroot ./share/nls/lt_LT.ISO8859-4 missing (created)
    3156 :info:destroot ./share/nls/nl_BE.ISO8859-1 missing (created)
    3157 :info:destroot ./share/nls/nl_BE.ISO8859-15 missing (created)
    3158 :info:destroot ./share/nls/nl_NL.ISO8859-1 missing (created)
    3159 :info:destroot ./share/nls/nl_NL.ISO8859-15 missing (created)
    3160 :info:destroot ./share/nls/no_NO.ISO8859-1 missing (created)
    3161 :info:destroot ./share/nls/no_NO.ISO8859-15 missing (created)
    3162 :info:destroot ./share/nls/pl_PL.ISO8859-2 missing (created)
    3163 :info:destroot ./share/nls/pt_BR.ISO8859-1 missing (created)
    3164 :info:destroot ./share/nls/pt_PT.ISO8859-1 missing (created)
    3165 :info:destroot ./share/nls/pt_PT.ISO8859-15 missing (created)
    3166 :info:destroot ./share/nls/ro_RO.ISO8859-2 missing (created)
    3167 :info:destroot ./share/nls/ru_RU.CP866 missing (created)
    3168 :info:destroot ./share/nls/ru_RU.ISO8859-5 missing (created)
    3169 :info:destroot ./share/nls/ru_RU.KOI8-R missing (created)
    3170 :info:destroot ./share/nls/sk_SK.ISO8859-2 missing (created)
    3171 :info:destroot ./share/nls/sl_SI.ISO8859-2 missing (created)
    3172 :info:destroot ./share/nls/sv_SE.ISO8859-1 missing (created)
    3173 :info:destroot ./share/nls/sv_SE.ISO8859-15 missing (created)
    3174 :info:destroot ./share/nls/tr_TR.ISO8859-9 missing (created)
    3175 :info:destroot ./share/nls/uk_UA.ISO8859-5 missing (created)
    3176 :info:destroot ./share/nls/uk_UA.KOI8-U missing (created)
    3177 :info:destroot ./share/nls/zh_CN.eucCN missing (created)
    3178 :info:destroot ./share/nls/zh_TW.Big5 missing (created)
    3179 :info:destroot ./share/skel missing (created)
    3180 :info:destroot ./src missing (created)
    3181 :info:destroot ./var missing (created)
    3182 :info:destroot ./www missing (created)
    3183 :debug:destroot Executing proc-pre-org.macports.destroot-destroot-0
    3184 :info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/share/doc
    3185 :info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/share/doc/pymol
    3186 :info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/share/doc/pymol/examples
    3187 :debug:destroot Executing proc-pre-org.macports.destroot-destroot-1
    3188 :debug:destroot Executing org.macports.destroot (pymol)
    3189 :debug:destroot Environment:
    3190 CC='/usr/bin/clang'
    3191 CC_PRINT_OPTIONS='YES'
    3192 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
    3193 CPATH='/opt/local/include'
    3194 CXX='/usr/bin/clang++'
    3195 LIBRARY_PATH='/opt/local/lib'
    3196 MACOSX_DEPLOYMENT_TARGET='10.9'
    3197 :debug:destroot Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg install --prefix=/opt/local/Library/Frameworks/Python.framework/Versions/2.7 --root=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot'
    3198 :debug:destroot Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg install --prefix=/opt/local/Library/Frameworks/Python.framework/Versions/2.7 --root=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot
    3199 :info:destroot fatal: Not a git repository (or any of the parent directories): .git
    3200 :info:destroot svn: E155007: '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol' is not a working copy
    3201 :info:destroot running install
    3202 :info:destroot running build
    3203 :info:destroot running build_py
    3204 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7
    3205 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol
    3206 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/embed
    3207 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/embed/epymol
    3208 :info:destroot copying modules/pymol/embed/epymol/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/embed/epymol
    3209 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/chempy
    3210 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/chempy/tinker
    3211 :info:destroot copying modules/chempy/tinker/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/tinker
    3212 :info:destroot copying modules/chempy/tinker/amber.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/tinker
    3213 :info:destroot copying modules/chempy/tinker/keyword.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/tinker
    3214 :info:destroot copying modules/chempy/tinker/realtime.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/tinker
    3215 :info:destroot copying modules/chempy/tinker/state.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/tinker
    3216 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pmg_tk
    3217 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins
    3218 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/demo
    3219 :info:destroot copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/demo
    3220 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup
    3221 :info:destroot copying modules/pmg_tk/startup/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup
    3222 :info:destroot copying modules/pmg_tk/startup/apbs_tools.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup
    3223 :info:destroot copying modules/pmg_tk/startup/remote_pdb_load.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup
    3224 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/opengl
    3225 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/glu
    3226 :info:destroot copying modules/pymol/opengl/glu/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/glu
    3227 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pmg_wx
    3228 :info:destroot copying modules/pmg_wx/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_wx
    3229 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/chempy/fast
    3230 :info:destroot copying modules/chempy/fast/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/fast
    3231 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/chempy/fragments
    3232 :info:destroot copying modules/chempy/fragments/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/fragments
    3233 :info:destroot copying modules/pmg_tk/skins/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins
    3234 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/web
    3235 :info:destroot copying modules/web/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/web
    3236 :info:destroot copying modules/web/pymolhttpd.py -> build/lib.macosx-10.9-x86_64-2.7/web
    3237 :info:destroot copying modules/pymol/embed/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/embed
    3238 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/contrib
    3239 :info:destroot copying modules/pymol/contrib/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/contrib
    3240 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/glut
    3241 :info:destroot copying modules/pymol/opengl/glut/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/glut
    3242 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol2
    3243 :info:destroot copying modules/pymol2/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol2
    3244 :info:destroot copying modules/pymol2/cmd2.py -> build/lib.macosx-10.9-x86_64-2.7/pymol2
    3245 :info:destroot copying modules/pymol2/make_cmd2.py -> build/lib.macosx-10.9-x86_64-2.7/pymol2
    3246 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/web/examples
    3247 :info:destroot copying modules/web/examples/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/web/examples
    3248 :info:destroot copying modules/web/examples/justhttpd.py -> build/lib.macosx-10.9-x86_64-2.7/web/examples
    3249 :info:destroot copying modules/pmg_tk/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk
    3250 :info:destroot copying modules/pmg_tk/ColorEditor.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk
    3251 :info:destroot copying modules/pmg_tk/Demo.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk
    3252 :info:destroot copying modules/pmg_tk/PMGApp.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk
    3253 :info:destroot copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk
    3254 :info:destroot copying modules/pmg_tk/SetEditor.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk
    3255 :info:destroot copying modules/pmg_tk/Setting.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk
    3256 :info:destroot copying modules/pmg_tk/TextEditor.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk
    3257 :info:destroot copying modules/pmg_tk/volume.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk
    3258 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal
    3259 :info:destroot copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal
    3260 :info:destroot copying modules/pmg_tk/skins/normal/builder.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal
    3261 :info:destroot copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal
    3262 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/chempy/champ
    3263 :info:destroot copying modules/chempy/champ/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/champ
    3264 :info:destroot copying modules/chempy/champ/amber99.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/champ
    3265 :info:destroot copying modules/chempy/champ/assign.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/champ
    3266 :info:destroot copying modules/chempy/champ/formal_charges.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/champ
    3267 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/embed/wxpymol
    3268 :info:destroot copying modules/pymol/embed/wxpymol/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/embed/wxpymol
    3269 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3270 :info:destroot copying modules/pymol/wizard/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3271 :info:destroot copying modules/pymol/wizard/annotation.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3272 :info:destroot copying modules/pymol/wizard/appearance.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3273 :info:destroot copying modules/pymol/wizard/benchmark.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3274 :info:destroot copying modules/pymol/wizard/box.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3275 :info:destroot copying modules/pymol/wizard/charge.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3276 :info:destroot copying modules/pymol/wizard/cleanup.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3277 :info:destroot copying modules/pymol/wizard/demo.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3278 :info:destroot copying modules/pymol/wizard/density.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3279 :info:destroot copying modules/pymol/wizard/distance.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3280 :info:destroot copying modules/pymol/wizard/dragging.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3281 :info:destroot copying modules/pymol/wizard/fedora.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3282 :info:destroot copying modules/pymol/wizard/filter.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3283 :info:destroot copying modules/pymol/wizard/label.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3284 :info:destroot copying modules/pymol/wizard/measurement.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3285 :info:destroot copying modules/pymol/wizard/message.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3286 :info:destroot copying modules/pymol/wizard/mutagenesis.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3287 :info:destroot copying modules/pymol/wizard/pair_fit.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3288 :info:destroot copying modules/pymol/wizard/pseudoatom.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3289 :info:destroot copying modules/pymol/wizard/renaming.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3290 :info:destroot copying modules/pymol/wizard/sculpting.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3291 :info:destroot copying modules/pymol/wizard/security.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3292 :info:destroot copying modules/pymol/wizard/stereodemo.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3293 :info:destroot copying modules/pymol/wizard/toggle.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
    3294 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/gl
    3295 :info:destroot copying modules/pymol/opengl/gl/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/gl
    3296 :info:destroot copying modules/pymol/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3297 :info:destroot copying modules/pymol/api.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3298 :info:destroot copying modules/pymol/callback.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3299 :info:destroot copying modules/pymol/cgo.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3300 :info:destroot copying modules/pymol/checking.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3301 :info:destroot copying modules/pymol/cmd.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3302 :info:destroot copying modules/pymol/colorramping.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3303 :info:destroot copying modules/pymol/commanding.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3304 :info:destroot copying modules/pymol/completing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3305 :info:destroot copying modules/pymol/computing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3306 :info:destroot copying modules/pymol/constants.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3307 :info:destroot copying modules/pymol/constants_palette.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3308 :info:destroot copying modules/pymol/controlling.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3309 :info:destroot copying modules/pymol/creating.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3310 :info:destroot copying modules/pymol/editing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3311 :info:destroot copying modules/pymol/editor.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3312 :info:destroot copying modules/pymol/experimenting.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3313 :info:destroot copying modules/pymol/exporting.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3314 :info:destroot copying modules/pymol/externing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3315 :info:destroot copying modules/pymol/feedingback.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3316 :info:destroot copying modules/pymol/fitting.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3317 :info:destroot copying modules/pymol/gui.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3318 :info:destroot copying modules/pymol/headering.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3319 :info:destroot copying modules/pymol/helping.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3320 :info:destroot copying modules/pymol/importing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3321 :info:destroot copying modules/pymol/internal.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3322 :info:destroot copying modules/pymol/invocation.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3323 :info:destroot copying modules/pymol/keyboard.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3324 :info:destroot copying modules/pymol/keywords.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3325 :info:destroot copying modules/pymol/locking.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3326 :info:destroot copying modules/pymol/m4x.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3327 :info:destroot copying modules/pymol/menu.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3328 :info:destroot copying modules/pymol/monitoring.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3329 :info:destroot copying modules/pymol/movie.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3330 :info:destroot copying modules/pymol/moving.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3331 :info:destroot copying modules/pymol/parser.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3332 :info:destroot copying modules/pymol/parsing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3333 :info:destroot copying modules/pymol/povray.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3334 :info:destroot copying modules/pymol/preset.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3335 :info:destroot copying modules/pymol/querying.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3336 :info:destroot copying modules/pymol/rpc.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3337 :info:destroot copying modules/pymol/selecting.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3338 :info:destroot copying modules/pymol/selector.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3339 :info:destroot copying modules/pymol/setting.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3340 :info:destroot copying modules/pymol/shortcut.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3341 :info:destroot copying modules/pymol/util.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3342 :info:destroot copying modules/pymol/vfont.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3343 :info:destroot copying modules/pymol/viewing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3344 :info:destroot copying modules/pymol/wizarding.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3345 :info:destroot copying modules/pymol/xray.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3346 :info:destroot copying modules/pymol/xwin.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
    3347 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/chempy/bmin
    3348 :info:destroot copying modules/chempy/bmin/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/bmin
    3349 :info:destroot copying modules/chempy/bmin/commands.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/bmin
    3350 :info:destroot copying modules/chempy/bmin/realtime.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/bmin
    3351 :info:destroot copying modules/chempy/bmin/state.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/bmin
    3352 :info:destroot copying modules/chempy/bmin/util.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/bmin
    3353 :info:destroot copying modules/chempy/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3354 :info:destroot copying modules/chempy/arc.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3355 :info:destroot copying modules/chempy/bond_amber.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3356 :info:destroot copying modules/chempy/bond_mmff.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3357 :info:destroot copying modules/chempy/bonds.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3358 :info:destroot copying modules/chempy/brick.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3359 :info:destroot copying modules/chempy/cc1.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3360 :info:destroot copying modules/chempy/cex.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3361 :info:destroot copying modules/chempy/charge.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3362 :info:destroot copying modules/chempy/cif.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3363 :info:destroot copying modules/chempy/cpv.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3364 :info:destroot copying modules/chempy/dictdb.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3365 :info:destroot copying modules/chempy/gamess1.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3366 :info:destroot copying modules/chempy/gms.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3367 :info:destroot copying modules/chempy/hetatm.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3368 :info:destroot copying modules/chempy/io.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3369 :info:destroot copying modules/chempy/lst.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3370 :info:destroot copying modules/chempy/mae.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3371 :info:destroot copying modules/chempy/map.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3372 :info:destroot copying modules/chempy/mass.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3373 :info:destroot copying modules/chempy/mmd.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3374 :info:destroot copying modules/chempy/models.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3375 :info:destroot copying modules/chempy/mol.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3376 :info:destroot copying modules/chempy/mol2.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3377 :info:destroot copying modules/chempy/neighbor.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3378 :info:destroot copying modules/chempy/pdb.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3379 :info:destroot copying modules/chempy/pkl.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3380 :info:destroot copying modules/chempy/place.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3381 :info:destroot copying modules/chempy/protein.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3382 :info:destroot copying modules/chempy/protein_amber.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3383 :info:destroot copying modules/chempy/protein_amber99.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3384 :info:destroot copying modules/chempy/protein_mmff.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3385 :info:destroot copying modules/chempy/protein_residues.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3386 :info:destroot copying modules/chempy/sdf.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3387 :info:destroot copying modules/chempy/solvate.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3388 :info:destroot copying modules/chempy/water_amber.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3389 :info:destroot copying modules/chempy/water_residues.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3390 :info:destroot copying modules/chempy/xyz.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
    3391 :info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/plugins
    3392 :info:destroot copying modules/pymol/plugins/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/plugins
    3393 :info:destroot copying modules/pymol/plugins/installation.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/plugins
    3394 :info:destroot copying modules/pymol/plugins/legacysupport.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/plugins
    3395 :info:destroot copying modules/pymol/plugins/managergui.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/plugins
    3396 :info:destroot copying modules/pymol/plugins/repository.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/plugins
    3397 :info:destroot copying modules/pymol/opengl/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/opengl
    3398 :info:destroot running build_ext
    3399 :info:destroot building 'pymol._cmd' extension
    3400 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7
    3401 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/ov
    3402 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/ov/src
    3403 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/layer0
    3404 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/layer1
    3405 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/layer2
    3406 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/layer3
    3407 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/layer4
    3408 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/layer5
    3409 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/modules
    3410 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/modules/cealign
    3411 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/modules/cealign/src
    3412 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/build
    3413 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/build/generated
    3414 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/contrib
    3415 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc
    3416 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins
    3417 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin
    3418 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src
    3419 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/ov_utility.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/ov_utility.o -ffast-math -funroll-loops -O3 -g -fcommon
    3420 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Err.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Err.o -ffast-math -funroll-loops -O3 -g -fcommon
    3421 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Pixmap.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Pixmap.o -ffast-math -funroll-loops -O3 -g -fcommon
    3422 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Basis.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Basis.o -ffast-math -funroll-loops -O3 -g -fcommon
    3423 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/ButMode.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/ButMode.o -ffast-math -funroll-loops -O3 -g -fcommon
    3424 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVContext.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVContext.o -ffast-math -funroll-loops -O3 -g -fcommon
    3425 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVHeap.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVHeap.o -ffast-math -funroll-loops -O3 -g -fcommon
    3426 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Queue.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Queue.o -ffast-math -funroll-loops -O3 -g -fcommon
    3427 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVHeapArray.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVHeapArray.o -ffast-math -funroll-loops -O3 -g -fcommon
    3428 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Feedback.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Feedback.o -ffast-math -funroll-loops -O3 -g -fcommon
    3429 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Raw.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Raw.o -ffast-math -funroll-loops -O3 -g -fcommon
    3430 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVLexicon.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVLexicon.o -ffast-math -funroll-loops -O3 -g -fcommon
    3431 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVOneToAny.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVOneToAny.o -ffast-math -funroll-loops -O3 -g -fcommon
    3432 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/ShaderMgr.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/ShaderMgr.o -ffast-math -funroll-loops -O3 -g -fcommon
    3433 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVOneToOne.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVOneToOne.o -ffast-math -funroll-loops -O3 -g -fcommon
    3434 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Field.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Field.o -ffast-math -funroll-loops -O3 -g -fcommon
    3435 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVRandom.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVRandom.o -ffast-math -funroll-loops -O3 -g -fcommon
    3436 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Block.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Block.o -ffast-math -funroll-loops -O3 -g -fcommon
    3437 :info:destroot layer0/ShaderMgr.c:521:11: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
    3438 :info:destroot   if (err = glGetError()){
    3439 :info:destroot       ~~~~^~~~~~~~~~~~~~
    3440 :info:destroot layer0/ShaderMgr.c:521:11: note: place parentheses around the assignment to silence this warning
    3441 :info:destroot   if (err = glGetError()){
    3442 :info:destroot           ^
    3443 :info:destroot       (                 )
    3444 :info:destroot layer0/ShaderMgr.c:521:11: note: use '==' to turn this assignment into an equality comparison
    3445 :info:destroot   if (err = glGetError()){
    3446 :info:destroot           ^
    3447 :info:destroot           ==
    3448 :info:destroot layer0/ShaderMgr.c:528:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
    3449 :info:destroot     if (err = glGetError()){
    3450 :info:destroot         ~~~~^~~~~~~~~~~~~~
    3451 :info:destroot layer0/ShaderMgr.c:528:13: note: place parentheses around the assignment to silence this warning
    3452 :info:destroot     if (err = glGetError()){
    3453 :info:destroot             ^
    3454 :info:destroot         (                 )
    3455 :info:destroot layer0/ShaderMgr.c:528:13: note: use '==' to turn this assignment into an equality comparison
    3456 :info:destroot     if (err = glGetError()){
    3457 :info:destroot             ^
    3458 :info:destroot             ==
    3459 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Isosurf.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Isosurf.o -ffast-math -funroll-loops -O3 -g -fcommon
    3460 :info:destroot layer0/ShaderMgr.c:827:14: warning: unused variable 'err' [-Wunused-variable]
    3461 :info:destroot       GLenum err ;
    3462 :info:destroot              ^
    3463 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/CGO.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/CGO.o -ffast-math -funroll-loops -O3 -g -fcommon
    3464 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Crystal.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Crystal.o -ffast-math -funroll-loops -O3 -g -fcommon
    3465 :info:destroot layer0/Isosurf.c:2211:1: warning: control reaches end of non-void function [-Wreturn-type]
    3466 :info:destroot }
    3467 :info:destroot ^
    3468 :info:destroot layer1/CGO.c:1881:6: warning: unused variable 'ncolors' [-Wunused-variable]
    3469 :info:destroot         int ncolors = 0;
    3470 :info:destroot             ^
    3471 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Debug.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Debug.o -ffast-math -funroll-loops -O3 -g -fcommon
    3472 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Deferred.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Deferred.o -ffast-math -funroll-loops -O3 -g -fcommon
    3473 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/FontGLUTHel12.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUTHel12.o -ffast-math -funroll-loops -O3 -g -fcommon
    3474 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/FontGLUTHel18.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUTHel18.o -ffast-math -funroll-loops -O3 -g -fcommon
    3475 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/FontType.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontType.o -ffast-math -funroll-loops -O3 -g -fcommon
    3476 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Movie.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Movie.o -ffast-math -funroll-loops -O3 -g -fcommon
    3477 :info:destroot 3 warnings generated.
    3478 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Sphere.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Sphere.o -ffast-math -funroll-loops -O3 -g -fcommon
    3479 :info:destroot layer0/Sphere.c:34:20: warning: unused variable 'start_points' [-Wunused-const-variable]
    3480 :info:destroot static const float start_points[13][3] = {
    3481 :info:destroot                    ^
    3482 :info:destroot layer0/Sphere.c:49:18: warning: unused variable 'icosahedron' [-Wunused-const-variable]
    3483 :info:destroot static const int icosahedron[21][3] = {
    3484 :info:destroot                  ^
    3485 :info:destroot 2 warnings generated.
    3486 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Tetsurf.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Tetsurf.o -ffast-math -funroll-loops -O3 -g -fcommon
    3487 :info:destroot 1 warning generated.
    3488 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Map.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Map.o -ffast-math -funroll-loops -O3 -g -fcommon
    3489 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Ortho.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Ortho.o -ffast-math -funroll-loops -O3 -g -fcommon
    3490 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Match.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Match.o -ffast-math -funroll-loops -O3 -g -fcommon
    3491 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Texture.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Texture.o -ffast-math -funroll-loops -O3 -g -fcommon
    3492 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Matrix.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Matrix.o -ffast-math -funroll-loops -O3 -g -fcommon
    3493 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Tracker.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Tracker.o -ffast-math -funroll-loops -O3 -g -fcommon
    3494 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Triangle.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Triangle.o -ffast-math -funroll-loops -O3 -g -fcommon
    3495 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/P.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/P.o -ffast-math -funroll-loops -O3 -g -fcommon
    3496 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/MemoryCache.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/MemoryCache.o -ffast-math -funroll-loops -O3 -g -fcommon
    3497 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/MemoryDebug.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/MemoryDebug.o -ffast-math -funroll-loops -O3 -g -fcommon
    3498 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/PConv.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/PConv.o -ffast-math -funroll-loops -O3 -g -fcommon
    3499 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/MyPNG.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/MyPNG.o -ffast-math -funroll-loops -O3 -g -fcommon
    3500 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/os_gl.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/os_gl.o -ffast-math -funroll-loops -O3 -g -fcommon
    3501 :info:destroot layer0/os_gl.c:99:59: warning: 'gluErrorString' is deprecated: first deprecated in OS X 10.9 [-Wdeprecated-declarations]
    3502 :info:destroot     printf("OpenGL-Error: Where? %s: %s\n", pos, (char *) gluErrorString(glerr));
    3503 :info:destroot                                                           ^
    3504 :info:destroot /System/Library/Frameworks/OpenGL.framework/Headers/glu.h:260:24: note: 'gluErrorString' has been explicitly marked deprecated here
    3505 :info:destroot extern const GLubyte * gluErrorString (GLenum error) OPENGL_DEPRECATED(10_0, 10_9);
    3506 :info:destroot                        ^
    3507 :info:destroot 1 warning generated.
    3508 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Parse.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Parse.o -ffast-math -funroll-loops -O3 -g -fcommon
    3509 :info:destroot layer0/Parse.c:173:10: warning: array subscript is of type 'char' [-Wchar-subscripts]
    3510 :info:destroot       buf[blen] = 0;
    3511 :info:destroot          ^~~~~
    3512 :info:destroot 1 warning generated.
    3513 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/ScrollBar.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/ScrollBar.o -ffast-math -funroll-loops -O3 -g -fcommon
    3514 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Pop.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Pop.o -ffast-math -funroll-loops -O3 -g -fcommon
    3515 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Util.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Util.o -ffast-math -funroll-loops -O3 -g -fcommon
    3516 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/PyMOLObject.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/PyMOLObject.o -ffast-math -funroll-loops -O3 -g -fcommon
    3517 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Seq.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Seq.o -ffast-math -funroll-loops -O3 -g -fcommon
    3518 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Vector.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Vector.o -ffast-math -funroll-loops -O3 -g -fcommon
    3519 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Setting.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Setting.o -ffast-math -funroll-loops -O3 -g -fcommon
    3520 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Ray.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Ray.o -ffast-math -funroll-loops -O3 -g -fcommon
    3521 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Word.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Word.o -ffast-math -funroll-loops -O3 -g -fcommon
    3522 :info:destroot 1 warning generated.
    3523 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Character.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Character.o -ffast-math -funroll-loops -O3 -g -fcommon
    3524 :info:destroot layer1/Character.c:267:18: warning: unused variable 'vertexVals' [-Wunused-variable]
    3525 :info:destroot           const GLfloat vertexVals [] = {
    3526 :info:destroot                         ^
    3527 :info:destroot layer1/Character.c:273:18: warning: unused variable 'texVals' [-Wunused-variable]
    3528 :info:destroot           const GLfloat texVals [] = {
    3529 :info:destroot                         ^
    3530 :info:destroot 2 warnings generated.
    3531 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Color.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Color.o -ffast-math -funroll-loops -O3 -g -fcommon
    3532 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/GadgetSet.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/GadgetSet.o -ffast-math -funroll-loops -O3 -g -fcommon
    3533 :info:destroot layer1/Color.c:3069:16: warning: unused variable 'result' [-Wunused-variable]
    3534 :info:destroot   unsigned int result;
    3535 :info:destroot                ^
    3536 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectAlignment.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectAlignment.o -ffast-math -funroll-loops -O3 -g -fcommon
    3537 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Shaker.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Shaker.o -ffast-math -funroll-loops -O3 -g -fcommon
    3538 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectCallback.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectCallback.o -ffast-math -funroll-loops -O3 -g -fcommon
    3539 :info:destroot 1 warning generated.
    3540 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Control.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Control.o -ffast-math -funroll-loops -O3 -g -fcommon
    3541 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectCGO.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectCGO.o -ffast-math -funroll-loops -O3 -g -fcommon
    3542 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Symmetry.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Symmetry.o -ffast-math -funroll-loops -O3 -g -fcommon
    3543 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Extrude.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Extrude.o -ffast-math -funroll-loops -O3 -g -fcommon
    3544 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Text.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Text.o -ffast-math -funroll-loops -O3 -g -fcommon
    3545 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectDist.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectDist.o -ffast-math -funroll-loops -O3 -g -fcommon
    3546 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectGadget.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectGadget.o -ffast-math -funroll-loops -O3 -g -fcommon
    3547 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectGadgetRamp.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectGadgetRamp.o -ffast-math -funroll-loops -O3 -g -fcommon
    3548 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Font.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Font.o -ffast-math -funroll-loops -O3 -g -fcommon
    3549 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/FontGLUT.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUT.o -ffast-math -funroll-loops -O3 -g -fcommon
    3550 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/FontGLUT8x13.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUT8x13.o -ffast-math -funroll-loops -O3 -g -fcommon
    3551 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/FontGLUT9x15.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUT9x15.o -ffast-math -funroll-loops -O3 -g -fcommon
    3552 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/FontGLUTHel10.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUTHel10.o -ffast-math -funroll-loops -O3 -g -fcommon
    3553 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectSlice.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectSlice.o -ffast-math -funroll-loops -O3 -g -fcommon
    3554 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectGroup.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectGroup.o -ffast-math -funroll-loops -O3 -g -fcommon
    3555 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectMap.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMap.o -ffast-math -funroll-loops -O3 -g -fcommon
    3556 :info:destroot In file included from layer2/ObjectMap.c:42:
    3557 :info:destroot In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
    3558 :info:destroot In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:
    3559 :info:destroot /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by "          "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
    3560 :info:destroot #warning "Using deprecated NumPy API, disable it by " \
    3561 :info:destroot  ^
    3562 :info:destroot layer2/ObjectMap.c:2684:5: warning: implicit declaration of function 'UtilNCopy' is invalid in C99 [-Wimplicit-function-declaration]
    3563 :info:destroot     UtilNCopy(ms->Symmetry->SpaceGroup, space_group_numbers[ispg], WordLength);
    3564 :info:destroot     ^
    3565 :info:destroot In file included from layer2/ObjectMap.c:42:
    3566 :info:destroot In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:
    3567 :info:destroot /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: unused function '_import_array' [-Wunused-function]
    3568 :info:destroot _import_array(void)
    3569 :info:destroot ^
    3570 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectSurface.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectSurface.o -ffast-math -funroll-loops -O3 -g -fcommon
    3571 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Rep.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Rep.o -ffast-math -funroll-loops -O3 -g -fcommon
    3572 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Scene.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Scene.o -ffast-math -funroll-loops -O3 -g -fcommon
    3573 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectVolume.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectVolume.o -ffast-math -funroll-loops -O3 -g -fcommon
    3574 :info:destroot layer2/ObjectVolume.c:73:19: warning: unused variable 'oms' [-Wunused-variable]
    3575 :info:destroot   ObjectMapState *oms = NULL;
    3576 :info:destroot                   ^
    3577 :info:destroot layer2/ObjectVolume.c:471:9: warning: '&&' within '||' [-Wlogical-op-parentheses]
    3578 :info:destroot         && vs->Ramp[5 * (vs->RampSize - 1)] == 359.f) {
    3579 :info:destroot         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    3580 :info:destroot layer2/ObjectVolume.c:471:9: note: place parentheses around the '&&' expression to silence this warning
    3581 :info:destroot         && vs->Ramp[5 * (vs->RampSize - 1)] == 359.f) {
    3582 :info:destroot         ^
    3583 :info:destroot layer2/ObjectVolume.c:452:51: warning: expression result unused [-Wunused-value]
    3584 :info:destroot       a, vs->RefreshFlag, vs->ResurfaceFlag ENDFD(G);
    3585 :info:destroot                                                   ^
    3586 :info:destroot layer2/ObjectVolume.c:435:14: warning: unused variable 'map' [-Wunused-variable]
    3587 :info:destroot   ObjectMap *map = NULL;
    3588 :info:destroot              ^
    3589 :info:destroot layer2/ObjectVolume.c:695:10: warning: unused variable 'j' [-Wunused-variable]
    3590 :info:destroot   int i, j, ci[] = {
    3591 :info:destroot          ^
    3592 :info:destroot layer2/ObjectVolume.c:891:89: warning: '&&' within '||' [-Wlogical-op-parentheses]
    3593 :info:destroot         CShaderPrg_Set1f(shaderPrg, "fogIsSolidColor", bg_gradient || bg_image_filename && bg_image_filename[0] ? 0.f : 1.f);
    3594 :info:destroot                                                                    ~~ ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
    3595 :info:destroot layer2/ObjectVolume.c:891:89: note: place parentheses around the '&&' expression to silence this warning
    3596 :info:destroot         CShaderPrg_Set1f(shaderPrg, "fogIsSolidColor", bg_gradient || bg_image_filename && bg_image_filename[0] ? 0.f : 1.f);
    3597 :info:destroot                                                                                         ^
    3598 :info:destroot                                                                       (                                        )
    3599 :info:destroot layer2/ObjectVolume.c:726:8: warning: unused variable 'n' [-Wunused-variable]
    3600 :info:destroot   int *n = NULL;
    3601 :info:destroot        ^
    3602 :info:destroot layer2/ObjectVolume.c:1330:9: warning: unused variable 'min_val' [-Wunused-variable]
    3603 :info:destroot   float min_val, max_val;
    3604 :info:destroot         ^
    3605 :info:destroot layer2/ObjectVolume.c:1330:18: warning: unused variable 'max_val' [-Wunused-variable]
    3606 :info:destroot   float min_val, max_val;
    3607 :info:destroot                  ^
    3608 :info:destroot layer1/Scene.c:9193:7: warning: 'gluPerspective' is deprecated: first deprecated in OS X 10.9 - "Use GLKMatrix4MakePerspective" [-Wdeprecated-declarations]
    3609 :info:destroot       gluPerspective(fov, aspRat, I->FrontSafe, I->BackSafe);
    3610 :info:destroot       ^
    3611 :info:destroot /System/Library/Frameworks/OpenGL.framework/Headers/glu.h:278:13: note: 'gluPerspective' has been explicitly marked deprecated here
    3612 :info:destroot extern void gluPerspective (GLdouble fovy, GLdouble aspect, GLdouble zNear, GLdouble zFar) OPENGL_DEPRECATED_MSG(10_0, 10_9, "Use GLKMatrix4MakePerspective");
    3613 :info:destroot             ^
    3614 :info:destroot 9 warnings generated.
    3615 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepAngle.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepAngle.o -ffast-math -funroll-loops -O3 -g -fcommon
    3616 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepCartoon.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepCartoon.o -ffast-math -funroll-loops -O3 -g -fcommon
    3617 :info:destroot 3 warnings generated.
    3618 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectMesh.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMesh.o -ffast-math -funroll-loops -O3 -g -fcommon
    3619 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectMolecule.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMolecule.o -ffast-math -funroll-loops -O3 -g -fcommon
    3620 :info:destroot 1 warning generated.
    3621 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepMesh.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepMesh.o -ffast-math -funroll-loops -O3 -g -fcommon
    3622 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepCylBond.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepCylBond.o -ffast-math -funroll-loops -O3 -g -fcommon
    3623 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepNonbonded.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepNonbonded.o -ffast-math -funroll-loops -O3 -g -fcommon
    3624 :info:destroot layer2/RepCylBond.c:2361:13: warning: unused function 'subdivide' [-Wunused-function]
    3625 :info:destroot static void subdivide(int n, float *x, float *y)
    3626 :info:destroot             ^
    3627 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepNonbondedSphere.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepNonbondedSphere.o -ffast-math -funroll-loops -O3 -g -fcommon
    3628 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepRibbon.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepRibbon.o -ffast-math -funroll-loops -O3 -g -fcommon
    3629 :info:destroot 1 warning generated.
    3630 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepDihedral.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDihedral.o -ffast-math -funroll-loops -O3 -g -fcommon
    3631 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepSphere.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepSphere.o -ffast-math -funroll-loops -O3 -g -fcommon
    3632 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepDistDash.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDistDash.o -ffast-math -funroll-loops -O3 -g -fcommon
    3633 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepDistLabel.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDistLabel.o -ffast-math -funroll-loops -O3 -g -fcommon
    3634 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepSurface.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepSurface.o -ffast-math -funroll-loops -O3 -g -fcommon
    3635 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepDot.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDot.o -ffast-math -funroll-loops -O3 -g -fcommon
    3636 :info:destroot layer2/RepSurface.c:4281:31: warning: unused function 'SurfaceJobAtomInfoVLAFromPyTuple' [-Wunused-function]
    3637 :info:destroot OV_INLINE SurfaceJobAtomInfo *SurfaceJobAtomInfoVLAFromPyTuple(PyObject * tuple)
    3638 :info:destroot                               ^
    3639 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepEllipsoid.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepEllipsoid.o -ffast-math -funroll-loops -O3 -g -fcommon
    3640 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepLabel.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepLabel.o -ffast-math -funroll-loops -O3 -g -fcommon
    3641 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer3/PlugIOManager.c -o build/temp.macosx-10.9-x86_64-2.7/layer3/PlugIOManager.o -ffast-math -funroll-loops -O3 -g -fcommon
    3642 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer3/Seeker.c -o build/temp.macosx-10.9-x86_64-2.7/layer3/Seeker.o -ffast-math -funroll-loops -O3 -g -fcommon
    3643 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer3/Selector.c -o build/temp.macosx-10.9-x86_64-2.7/layer3/Selector.o -ffast-math -funroll-loops -O3 -g -fcommon
    3644 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/TypeFace.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/TypeFace.o -ffast-math -funroll-loops -O3 -g -fcommon
    3645 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/View.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/View.o -ffast-math -funroll-loops -O3 -g -fcommon
    3646 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Wizard.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Wizard.o -ffast-math -funroll-loops -O3 -g -fcommon
    3647 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/AtomInfo.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/AtomInfo.o -ffast-math -funroll-loops -O3 -g -fcommon
    3648 :info:destroot 1 warning generated.
    3649 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepWireBond.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepWireBond.o -ffast-math -funroll-loops -O3 -g -fcommon
    3650 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/CoordSet.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/CoordSet.o -ffast-math -funroll-loops -O3 -g -fcommon
    3651 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectMolecule2.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMolecule2.o -ffast-math -funroll-loops -O3 -g -fcommon
    3652 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/Sculpt.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/Sculpt.o -ffast-math -funroll-loops -O3 -g -fcommon
    3653 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/DistSet.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/DistSet.o -ffast-math -funroll-loops -O3 -g -fcommon
    3654 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3655 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:43:
    3656 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:706:12: warning: unused function 'symmetry_expand' [-Wunused-function]
    3657 :info:destroot static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
    3658 :info:destroot            ^
    3659 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:830:13: warning: unused function 'eatline' [-Wunused-function]
    3660 :info:destroot static void eatline(FILE * fd, int n)
    3661 :info:destroot             ^
    3662 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:841:13: warning: unused function 'eatwhitelines' [-Wunused-function]
    3663 :info:destroot static void eatwhitelines(FILE *file) {
    3664 :info:destroot             ^
    3665 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:890:12: warning: unused function 'iswhiteline' [-Wunused-function]
    3666 :info:destroot static int iswhiteline(char *s) {
    3667 :info:destroot            ^
    3668 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:896:14: warning: unused function 'strtoupper' [-Wunused-function]
    3669 :info:destroot static char *strtoupper(char *s) {
    3670 :info:destroot              ^
    3671 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:957:12: warning: unused function 'goto_keyline' [-Wunused-function]
    3672 :info:destroot static int goto_keyline(FILE *file, ...) {
    3673 :info:destroot            ^
    3674 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1001:12: warning: unused function 'have_keyline' [-Wunused-function]
    3675 :info:destroot static int have_keyline(FILE *file, const char *keystring1,
    3676 :info:destroot            ^
    3677 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1072:13: warning: unused function 'thisline' [-Wunused-function]
    3678 :info:destroot static void thisline(FILE *file) {
    3679 :info:destroot             ^
    3680 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1092:13: warning: unused function 'whereami' [-Wunused-function]
    3681 :info:destroot static void whereami(FILE *file) {
    3682 :info:destroot             ^
    3683 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:433:18: warning: unused function 'init_qmdata' [-Wunused-function]
    3684 :info:destroot static qmdata_t* init_qmdata(qmdata_t *data) {
    3685 :info:destroot                  ^
    3686 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:466:27: warning: unused function 'add_wavefunction' [-Wunused-function]
    3687 :info:destroot static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) {
    3688 :info:destroot                           ^
    3689 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:485:13: warning: unused function 'replace_wavefunction' [-Wunused-function]
    3690 :info:destroot static void replace_wavefunction(qm_timestep_t *ts, int n) {
    3691 :info:destroot             ^
    3692 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:502:13: warning: unused function 'del_wavefunction' [-Wunused-function]
    3693 :info:destroot static void del_wavefunction(qm_timestep_t *ts) {
    3694 :info:destroot             ^
    3695 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:535:13: warning: unused function 'angular_momentum_expon' [-Wunused-function]
    3696 :info:destroot static void angular_momentum_expon(int  *ang_mom_expon,
    3697 :info:destroot             ^
    3698 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:580:13: warning: unused function 'print_matrix4' [-Wunused-function]
    3699 :info:destroot static void print_matrix4(const float mat[16]) {
    3700 :info:destroot             ^
    3701 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1023:12: warning: unused function 'fpexpftoc' [-Wunused-function]
    3702 :info:destroot static int fpexpftoc(char *ftocstr) {
    3703 :info:destroot            ^
    3704 :info:destroot 16 warnings generated.
    3705 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3706 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3707 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3708 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/SculptCache.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/SculptCache.o -ffast-math -funroll-loops -O3 -g -fcommon
    3709 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3710 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3711 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
    3712 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/fastio.h:468:12: warning: unused function 'fio_read_int32' [-Wunused-function]
    3713 :info:destroot static int fio_read_int32(fio_fd fd, int *i) {
    3714 :info:destroot            ^
    3715 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/fastio.h:472:12: warning: unused function 'fio_write_str' [-Wunused-function]
    3716 :info:destroot static int fio_write_str(fio_fd fd, const char *str) {
    3717 :info:destroot            ^
    3718 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:
    3719 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
    3720 :info:destroot static void swap2_unaligned(void *v, long ndata) {
    3721 :info:destroot             ^
    3722 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
    3723 :info:destroot static void swap2_aligned(void *v, long ndata) {
    3724 :info:destroot             ^
    3725 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/VFont.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/VFont.o -ffast-math -funroll-loops -O3 -g -fcommon
    3726 :info:destroot 4 warnings generated.
    3727 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3728 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer3/Editor.c -o build/temp.macosx-10.9-x86_64-2.7/layer3/Editor.o -ffast-math -funroll-loops -O3 -g -fcommon
    3729 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3730 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
    3731 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:890:12: warning: unused function 'iswhiteline' [-Wunused-function]
    3732 :info:destroot static int iswhiteline(char *s) {
    3733 :info:destroot            ^
    3734 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:896:14: warning: unused function 'strtoupper' [-Wunused-function]
    3735 :info:destroot static char *strtoupper(char *s) {
    3736 :info:destroot              ^
    3737 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1072:13: warning: unused function 'thisline' [-Wunused-function]
    3738 :info:destroot static void thisline(FILE *file) {
    3739 :info:destroot             ^
    3740 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1092:13: warning: unused function 'whereami' [-Wunused-function]
    3741 :info:destroot static void whereami(FILE *file) {
    3742 :info:destroot             ^
    3743 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:580:13: warning: unused function 'print_matrix4' [-Wunused-function]
    3744 :info:destroot static void print_matrix4(const float mat[16]) {
    3745 :info:destroot             ^
    3746 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1023:12: warning: unused function 'fpexpftoc' [-Wunused-function]
    3747 :info:destroot static int fpexpftoc(char *ftocstr) {
    3748 :info:destroot            ^
    3749 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:
    3750 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: unused function 'get_pte_label' [-Wunused-function]
    3751 :info:destroot static const char *get_pte_label(const int idx)
    3752 :info:destroot                    ^
    3753 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: unused function 'get_pte_mass' [-Wunused-function]
    3754 :info:destroot static float get_pte_mass(const int idx)
    3755 :info:destroot              ^
    3756 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: unused function 'get_pte_vdw_radius' [-Wunused-function]
    3757 :info:destroot static float get_pte_vdw_radius(const int idx)
    3758 :info:destroot              ^
    3759 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: unused function 'get_pte_idx' [-Wunused-function]
    3760 :info:destroot static int get_pte_idx(const char *label)
    3761 :info:destroot            ^
    3762 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:997:13: warning: unused function 'print_input_data' [-Wunused-function]
    3763 :info:destroot static void print_input_data(qmdata_t *data) {
    3764 :info:destroot             ^
    3765 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer3/Executive.c -o build/temp.macosx-10.9-x86_64-2.7/layer3/Executive.o -ffast-math -funroll-loops -O3 -g -fcommon
    3766 :info:destroot layer3/Executive.c:4495:50: warning: data argument not used by format string [-Wformat-extra-args]
    3767 :info:destroot       " GetHistogram-Error: wrong object type.", objName ENDFB(G);
    3768 :info:destroot       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  ^
    3769 :info:destroot layer3/Executive.c:5898:19: warning: incompatible pointer to integer conversion assigning to 'int' from 'CSymmetry *' [-Wint-conversion]
    3770 :info:destroot   ok_assert(1, ok = symmetry);
    3771 :info:destroot                   ^ ~~~~~~~~
    3772 :info:destroot layer0/Err.h:32:31: note: expanded from macro 'ok_assert'
    3773 :info:destroot #define ok_assert(x, c) {if(!(c)) ok_raise(x);}
    3774 :info:destroot                               ^
    3775 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3776 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:33:
    3777 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: unused function 'get_pte_idx' [-Wunused-function]
    3778 :info:destroot static int get_pte_idx(const char *label)
    3779 :info:destroot            ^
    3780 :info:destroot 11 warnings generated.
    3781 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -ffast-math -funroll-loops -O3 -g -fcommon
    3782 :info:destroot 1 warning generated.
    3783 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -ffast-math -funroll-loops -O3 -g -fcommon
    3784 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3785 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:403:16: warning: unused variable 'bszmask' [-Wunused-variable]
    3786 :info:destroot     fio_size_t bszmask;
    3787 :info:destroot                ^
    3788 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:87:
    3789 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/hash.h:37:
    3790 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/hash.c:183:21: warning: unused function 'hash_delete' [-Wunused-function]
    3791 :info:destroot VMDEXTERNSTATIC int hash_delete(hash_t *tptr, const char *key) {
    3792 :info:destroot                     ^
    3793 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/hash.c:270:24: warning: unused function 'hash_stats' [-Wunused-function]
    3794 :info:destroot VMDEXTERNSTATIC char * hash_stats(hash_t *tptr) {
    3795 :info:destroot                        ^
    3796 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:88:
    3797 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
    3798 :info:destroot static void swap2_unaligned(void *v, long ndata) {
    3799 :info:destroot             ^
    3800 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
    3801 :info:destroot static void swap4_unaligned(void *v, long ndata) {
    3802 :info:destroot             ^
    3803 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
    3804 :info:destroot static void swap8_unaligned(void *v, long ndata) {
    3805 :info:destroot             ^
    3806 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3807 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3808 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:29:
    3809 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28:
    3810 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
    3811 :info:destroot static void swap2_unaligned(void *v, long ndata) {
    3812 :info:destroot             ^
    3813 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
    3814 :info:destroot static void swap4_unaligned(void *v, long ndata) {
    3815 :info:destroot             ^
    3816 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
    3817 :info:destroot static void swap8_unaligned(void *v, long ndata) {
    3818 :info:destroot             ^
    3819 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
    3820 :info:destroot static void swap2_aligned(void *v, long ndata) {
    3821 :info:destroot             ^
    3822 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
    3823 :info:destroot static void swap8_aligned(void *v, long ndata) {
    3824 :info:destroot             ^
    3825 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:29:
    3826 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: unused function 'fort_eat_recmark' [-Wunused-function]
    3827 :info:destroot static int fort_eat_recmark(FILE *ifp, int recmarklen) {
    3828 :info:destroot            ^
    3829 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: unused function 'fort_get_endian_reclen' [-Wunused-function]
    3830 :info:destroot static int fort_get_endian_reclen(int reclen, int word0, int word1,
    3831 :info:destroot            ^
    3832 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: unused function 'fortread_4' [-Wunused-function]
    3833 :info:destroot static int fortread_4(void *dest, int n, int swap, FILE *fd) {
    3834 :info:destroot            ^
    3835 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer4/Cmd.c -o build/temp.macosx-10.9-x86_64-2.7/layer4/Cmd.o -ffast-math -funroll-loops -O3 -g -fcommon
    3836 :info:destroot 8 warnings generated.
    3837 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3838 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3839 :info:destroot layer4/Cmd.c:5985:29: warning: '&&' within '||' [-Wlogical-op-parentheses]
    3840 :info:destroot       if(ray || !G->HaveGUI && (!SceneGetCopyType(G) || width || height)) {
    3841 :info:destroot              ~~ ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    3842 :info:destroot layer4/Cmd.c:5985:29: note: place parentheses around the '&&' expression to silence this warning
    3843 :info:destroot       if(ray || !G->HaveGUI && (!SceneGetCopyType(G) || width || height)) {
    3844 :info:destroot                             ^
    3845 :info:destroot                 (                                                       )
    3846 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3847 :info:destroot 6 warnings generated.
    3848 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3849 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:42:
    3850 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: unused function 'vasp_timestep_unitcell' [-Wunused-function]
    3851 :info:destroot static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
    3852 :info:destroot             ^
    3853 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:7: warning: unused variable 's_expon' [-Wunused-variable]
    3854 :info:destroot         char s_expon[128], s_coeff1[128], s_coeff2[128];
    3855 :info:destroot              ^
    3856 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:21: warning: unused variable 's_coeff1' [-Wunused-variable]
    3857 :info:destroot         char s_expon[128], s_coeff1[128], s_coeff2[128];
    3858 :info:destroot                            ^
    3859 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:36: warning: unused variable 's_coeff2' [-Wunused-variable]
    3860 :info:destroot         char s_expon[128], s_coeff1[128], s_coeff2[128];
    3861 :info:destroot                                           ^
    3862 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:37:
    3863 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: unused function 'get_pte_label' [-Wunused-function]
    3864 :info:destroot static const char *get_pte_label(const int idx)
    3865 :info:destroot                    ^
    3866 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: unused function 'get_pte_mass' [-Wunused-function]
    3867 :info:destroot static float get_pte_mass(const int idx)
    3868 :info:destroot              ^
    3869 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: unused function 'get_pte_vdw_radius' [-Wunused-function]
    3870 :info:destroot static float get_pte_vdw_radius(const int idx)
    3871 :info:destroot              ^
    3872 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: unused function 'get_pte_idx' [-Wunused-function]
    3873 :info:destroot static int get_pte_idx(const char *label)
    3874 :info:destroot            ^
    3875 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:38:
    3876 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:706:12: warning: unused function 'symmetry_expand' [-Wunused-function]
    3877 :info:destroot static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
    3878 :info:destroot            ^
    3879 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1001:12: warning: unused function 'have_keyline' [-Wunused-function]
    3880 :info:destroot static int have_keyline(FILE *file, const char *keystring1,
    3881 :info:destroot            ^
    3882 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1072:13: warning: unused function 'thisline' [-Wunused-function]
    3883 :info:destroot static void thisline(FILE *file) {
    3884 :info:destroot             ^
    3885 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1092:13: warning: unused function 'whereami' [-Wunused-function]
    3886 :info:destroot static void whereami(FILE *file) {
    3887 :info:destroot             ^
    3888 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:485:13: warning: unused function 'replace_wavefunction' [-Wunused-function]
    3889 :info:destroot static void replace_wavefunction(qm_timestep_t *ts, int n) {
    3890 :info:destroot             ^
    3891 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:502:13: warning: unused function 'del_wavefunction' [-Wunused-function]
    3892 :info:destroot static void del_wavefunction(qm_timestep_t *ts) {
    3893 :info:destroot             ^
    3894 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:580:13: warning: unused function 'print_matrix4' [-Wunused-function]
    3895 :info:destroot static void print_matrix4(const float mat[16]) {
    3896 :info:destroot             ^
    3897 :info:destroot 1 warning generated.
    3898 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3899 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:41:
    3900 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function]
    3901 :info:destroot static int get_pte_idx_from_string(const char *label) {
    3902 :info:destroot            ^
    3903 :info:destroot 1 warning generated.
    3904 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3905 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:42:
    3906 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: unused function 'vasp_timestep_unitcell' [-Wunused-function]
    3907 :info:destroot static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
    3908 :info:destroot             ^
    3909 :info:destroot 1 warning generated.
    3910 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3911 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:41:
    3912 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function]
    3913 :info:destroot static int get_pte_idx_from_string(const char *label) {
    3914 :info:destroot            ^
    3915 :info:destroot 1 warning generated.
    3916 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3917 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:41:
    3918 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function]
    3919 :info:destroot static int get_pte_idx_from_string(const char *label) {
    3920 :info:destroot            ^
    3921 :info:destroot 1 warning generated.
    3922 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3923 :info:destroot 14 warnings generated.
    3924 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3925 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:82:23: warning: expression which evaluates to zero treated as a null pointer constant of type 'char *' [-Wnon-literal-null-conversion]
    3926 :info:destroot        if (end) end = '\0';
    3927 :info:destroot                       ^~~~
    3928 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:48:
    3929 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function]
    3930 :info:destroot static int get_pte_idx_from_string(const char *label) {
    3931 :info:destroot            ^
    3932 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3933 :info:destroot 2 warnings generated.
    3934 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3935 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:47:
    3936 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
    3937 :info:destroot static void swap2_unaligned(void *v, long ndata) {
    3938 :info:destroot             ^
    3939 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
    3940 :info:destroot static void swap4_unaligned(void *v, long ndata) {
    3941 :info:destroot             ^
    3942 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
    3943 :info:destroot static void swap8_unaligned(void *v, long ndata) {
    3944 :info:destroot             ^
    3945 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
    3946 :info:destroot static void swap2_aligned(void *v, long ndata) {
    3947 :info:destroot             ^
    3948 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
    3949 :info:destroot static void swap8_aligned(void *v, long ndata) {
    3950 :info:destroot             ^
    3951 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:48:
    3952 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: unused function 'fort_eat_recmark' [-Wunused-function]
    3953 :info:destroot static int fort_eat_recmark(FILE *ifp, int recmarklen) {
    3954 :info:destroot            ^
    3955 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: unused function 'fort_get_endian_reclen' [-Wunused-function]
    3956 :info:destroot static int fort_get_endian_reclen(int reclen, int word0, int word1,
    3957 :info:destroot            ^
    3958 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: unused function 'strnwscpy' [-Wunused-function]
    3959 :info:destroot static void strnwscpy(char *target, const char *source, const int len) {
    3960 :info:destroot             ^
    3961 :info:destroot 8 warnings generated.
    3962 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3963 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:40:
    3964 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
    3965 :info:destroot static void swap2_unaligned(void *v, long ndata) {
    3966 :info:destroot             ^
    3967 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
    3968 :info:destroot static void swap4_unaligned(void *v, long ndata) {
    3969 :info:destroot             ^
    3970 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
    3971 :info:destroot static void swap8_unaligned(void *v, long ndata) {
    3972 :info:destroot             ^
    3973 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
    3974 :info:destroot static void swap8_aligned(void *v, long ndata) {
    3975 :info:destroot             ^
    3976 :info:destroot 4 warnings generated.
    3977 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3978 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp:51:
    3979 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
    3980 :info:destroot static void swap2_unaligned(void *v, long ndata) {
    3981 :info:destroot             ^
    3982 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
    3983 :info:destroot static void swap4_unaligned(void *v, long ndata) {
    3984 :info:destroot             ^
    3985 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
    3986 :info:destroot static void swap8_unaligned(void *v, long ndata) {
    3987 :info:destroot             ^
    3988 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
    3989 :info:destroot static void swap2_aligned(void *v, long ndata) {
    3990 :info:destroot             ^
    3991 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
    3992 :info:destroot static void swap8_aligned(void *v, long ndata) {
    3993 :info:destroot             ^
    3994 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3995 :info:destroot 5 warnings generated.
    3996 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    3997 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:
    3998 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function]
    3999 :info:destroot static int get_pte_idx_from_string(const char *label) {
    4000 :info:destroot            ^
    4001 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:59:
    4002 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
    4003 :info:destroot static void swap2_unaligned(void *v, long ndata) {
    4004 :info:destroot             ^
    4005 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
    4006 :info:destroot static void swap4_unaligned(void *v, long ndata) {
    4007 :info:destroot             ^
    4008 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
    4009 :info:destroot static void swap8_unaligned(void *v, long ndata) {
    4010 :info:destroot             ^
    4011 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
    4012 :info:destroot static void swap2_aligned(void *v, long ndata) {
    4013 :info:destroot             ^
    4014 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
    4015 :info:destroot static void swap8_aligned(void *v, long ndata) {
    4016 :info:destroot             ^
    4017 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:60:
    4018 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: unused function 'fort_eat_recmark' [-Wunused-function]
    4019 :info:destroot static int fort_eat_recmark(FILE *ifp, int recmarklen) {
    4020 :info:destroot            ^
    4021 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: unused function 'fort_get_endian_reclen' [-Wunused-function]
    4022 :info:destroot static int fort_get_endian_reclen(int reclen, int word0, int word1,
    4023 :info:destroot            ^
    4024 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: unused function 'strnwscpy' [-Wunused-function]
    4025 :info:destroot static void strnwscpy(char *target, const char *source, const int len) {
    4026 :info:destroot             ^
    4027 :info:destroot 8 warnings generated.
    4028 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4029 :info:destroot 1 warning generated.
    4030 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4031 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
    4032 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:48:
    4033 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
    4034 :info:destroot static void swap2_unaligned(void *v, long ndata) {
    4035 :info:destroot             ^
    4036 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
    4037 :info:destroot static void swap4_unaligned(void *v, long ndata) {
    4038 :info:destroot             ^
    4039 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
    4040 :info:destroot static void swap8_unaligned(void *v, long ndata) {
    4041 :info:destroot             ^
    4042 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
    4043 :info:destroot static void swap2_aligned(void *v, long ndata) {
    4044 :info:destroot             ^
    4045 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4046 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4047 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4048 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4049 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:44:
    4050 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
    4051 :info:destroot static void swap2_unaligned(void *v, long ndata) {
    4052 :info:destroot             ^
    4053 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
    4054 :info:destroot static void swap4_unaligned(void *v, long ndata) {
    4055 :info:destroot             ^
    4056 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
    4057 :info:destroot static void swap8_unaligned(void *v, long ndata) {
    4058 :info:destroot             ^
    4059 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
    4060 :info:destroot static void swap2_aligned(void *v, long ndata) {
    4061 :info:destroot             ^
    4062 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
    4063 :info:destroot static void swap8_aligned(void *v, long ndata) {
    4064 :info:destroot             ^
    4065 :info:destroot 5 warnings generated.
    4066 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4067 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:42:
    4068 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: unused function 'get_pte_idx' [-Wunused-function]
    4069 :info:destroot static int get_pte_idx(const char *label)
    4070 :info:destroot            ^
    4071 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function]
    4072 :info:destroot static int get_pte_idx_from_string(const char *label) {
    4073 :info:destroot            ^
    4074 :info:destroot 4 warnings generated.
    4075 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4076 :info:destroot 2 warnings generated.
    4077 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4078 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:63:
    4079 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
    4080 :info:destroot static void swap4_unaligned(void *v, long ndata) {
    4081 :info:destroot             ^
    4082 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
    4083 :info:destroot static void swap8_unaligned(void *v, long ndata) {
    4084 :info:destroot             ^
    4085 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: unused function 'swap4_aligned' [-Wunused-function]
    4086 :info:destroot static void swap4_aligned(void *v, long ndata) {
    4087 :info:destroot             ^
    4088 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
    4089 :info:destroot static void swap8_aligned(void *v, long ndata) {
    4090 :info:destroot             ^
    4091 :info:destroot 4 warnings generated.
    4092 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4093 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:680:44: warning: field 'eno' is uninitialized when used here [-Wuninitialized]
    4094 :info:destroot       : std::runtime_error(text + strerror(eno)), eno(_eno){}
    4095 :info:destroot                                            ^
    4096 :info:destroot 1 warning generated.
    4097 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer4/Export.c -o build/temp.macosx-10.9-x86_64-2.7/layer4/Export.o -ffast-math -funroll-loops -O3 -g -fcommon
    4098 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1883:9: warning: unused variable 'last_ctnumber' [-Wunused-variable]
    4099 :info:destroot     int last_ctnumber = -1;
    4100 :info:destroot         ^
    4101 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer4/Menu.c -o build/temp.macosx-10.9-x86_64-2.7/layer4/Menu.o -ffast-math -funroll-loops -O3 -g -fcommon
    4102 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:70:
    4103 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/vmddir.h:137:12: warning: unused function 'vmd_file_is_executable' [-Wunused-function]
    4104 :info:destroot static int vmd_file_is_executable(const char * filename) {
    4105 :info:destroot            ^
    4106 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:71:
    4107 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
    4108 :info:destroot static void swap2_unaligned(void *v, long ndata) {
    4109 :info:destroot             ^
    4110 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
    4111 :info:destroot static void swap2_aligned(void *v, long ndata) {
    4112 :info:destroot             ^
    4113 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: unused function 'swap4_aligned' [-Wunused-function]
    4114 :info:destroot static void swap4_aligned(void *v, long ndata) {
    4115 :info:destroot             ^
    4116 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
    4117 :info:destroot static void swap8_aligned(void *v, long ndata) {
    4118 :info:destroot             ^
    4119 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer4/PopUp.c -o build/temp.macosx-10.9-x86_64-2.7/layer4/PopUp.o -ffast-math -funroll-loops -O3 -g -fcommon
    4120 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer5/main.c -o build/temp.macosx-10.9-x86_64-2.7/layer5/main.o -ffast-math -funroll-loops -O3 -g -fcommon
    4121 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer5/PyMOL.c -o build/temp.macosx-10.9-x86_64-2.7/layer5/PyMOL.o -ffast-math -funroll-loops -O3 -g -fcommon
    4122 :info:destroot 2 warnings generated.
    4123 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4124 :info:destroot layer5/PyMOL.c:959:37: warning: unused function 'return_status' [-Wunused-function]
    4125 :info:destroot CC_INLINE static PyMOLreturn_status return_status(int status)
    4126 :info:destroot                                     ^
    4127 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4128 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp:53:
    4129 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
    4130 :info:destroot static void swap2_unaligned(void *v, long ndata) {
    4131 :info:destroot             ^
    4132 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
    4133 :info:destroot static void swap4_unaligned(void *v, long ndata) {
    4134 :info:destroot             ^
    4135 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
    4136 :info:destroot static void swap8_unaligned(void *v, long ndata) {
    4137 :info:destroot             ^
    4138 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
    4139 :info:destroot static void swap2_aligned(void *v, long ndata) {
    4140 :info:destroot             ^
    4141 :info:destroot 4 warnings generated.
    4142 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4143 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4144 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:42:
    4145 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
    4146 :info:destroot static void swap2_unaligned(void *v, long ndata) {
    4147 :info:destroot             ^
    4148 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
    4149 :info:destroot static void swap4_unaligned(void *v, long ndata) {
    4150 :info:destroot             ^
    4151 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
    4152 :info:destroot static void swap8_unaligned(void *v, long ndata) {
    4153 :info:destroot             ^
    4154 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
    4155 :info:destroot static void swap2_aligned(void *v, long ndata) {
    4156 :info:destroot             ^
    4157 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
    4158 :info:destroot static void swap8_aligned(void *v, long ndata) {
    4159 :info:destroot             ^
    4160 :info:destroot 5 warnings generated.
    4161 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4162 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4163 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4164 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:277:13: warning: unused variable 'z' [-Wunused-variable]
    4165 :info:destroot   int x, y, z, xsize, ysize, zsize, xysize, total;
    4166 :info:destroot             ^
    4167 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:277:7: warning: unused variable 'x' [-Wunused-variable]
    4168 :info:destroot   int x, y, z, xsize, ysize, zsize, xysize, total;
    4169 :info:destroot       ^
    4170 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:277:10: warning: unused variable 'y' [-Wunused-variable]
    4171 :info:destroot   int x, y, z, xsize, ysize, zsize, xysize, total;
    4172 :info:destroot          ^
    4173 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:36:
    4174 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
    4175 :info:destroot static void swap2_unaligned(void *v, long ndata) {
    4176 :info:destroot             ^
    4177 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
    4178 :info:destroot static void swap4_unaligned(void *v, long ndata) {
    4179 :info:destroot             ^
    4180 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
    4181 :info:destroot static void swap8_unaligned(void *v, long ndata) {
    4182 :info:destroot             ^
    4183 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
    4184 :info:destroot static void swap2_aligned(void *v, long ndata) {
    4185 :info:destroot             ^
    4186 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
    4187 :info:destroot static void swap8_aligned(void *v, long ndata) {
    4188 :info:destroot             ^
    4189 :info:destroot 8 warnings generated.
    4190 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4191 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4192 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:47:
    4193 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
    4194 :info:destroot static void swap2_unaligned(void *v, long ndata) {
    4195 :info:destroot             ^
    4196 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
    4197 :info:destroot static void swap8_unaligned(void *v, long ndata) {
    4198 :info:destroot             ^
    4199 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
    4200 :info:destroot static void swap2_aligned(void *v, long ndata) {
    4201 :info:destroot             ^
    4202 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
    4203 :info:destroot static void swap8_aligned(void *v, long ndata) {
    4204 :info:destroot             ^
    4205 :info:destroot 4 warnings generated.
    4206 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4207 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4208 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:37:
    4209 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function]
    4210 :info:destroot static int get_pte_idx_from_string(const char *label) {
    4211 :info:destroot            ^
    4212 :info:destroot 1 warning generated.
    4213 :info:destroot 6 warnings generated.
    4214 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4215 :info:destroot 1 warning generated.
    4216 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer5/TestPyMOL.c -o build/temp.macosx-10.9-x86_64-2.7/layer5/TestPyMOL.o -ffast-math -funroll-loops -O3 -g -fcommon
    4217 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4218 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:207:10: warning: unused variable 'l' [-Wunused-variable]
    4219 :info:destroot   int z, l, sentinel, convcnt;
    4220 :info:destroot          ^
    4221 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:220:7: warning: unused variable 'leftover' [-Wunused-variable]
    4222 :info:destroot   int leftover = (nperslice - (nlines - 1) * 6);
    4223 :info:destroot       ^
    4224 :info:destroot 2 warnings generated.
    4225 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.macosx-10.9-x86_64-2.7/modules/cealign/src/ccealignmodule.o -ffast-math -funroll-loops -O3 -g -fcommon
    4226 :info:destroot 1 warning generated.
    4227 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4228 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4229 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:135:7: warning: unused variable 'retval' [-Wunused-variable]
    4230 :info:destroot   int retval;
    4231 :info:destroot       ^
    4232 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:45:
    4233 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/hash.h:37:
    4234 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/hash.c:183:21: warning: unused function 'hash_delete' [-Wunused-function]
    4235 :info:destroot VMDEXTERNSTATIC int hash_delete(hash_t *tptr, const char *key) {
    4236 :info:destroot                     ^
    4237 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/hash.c:270:24: warning: unused function 'hash_stats' [-Wunused-function]
    4238 :info:destroot VMDEXTERNSTATIC char * hash_stats(hash_t *tptr) {
    4239 :info:destroot                        ^
    4240 :info:destroot 3 warnings generated.
    4241 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mmcif.o -ffast-math -funroll-loops -O3 -g -fcommon
    4242 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp:85:14: warning: unused variable 'data' [-Wunused-variable]
    4243 :info:destroot   mmcifdata *data = (mmcifdata *)mydata;
    4244 :info:destroot              ^
    4245 :info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp:64:
    4246 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: unused function 'get_pte_label' [-Wunused-function]
    4247 :info:destroot static const char *get_pte_label(const int idx)
    4248 :info:destroot                    ^
    4249 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: unused function 'get_pte_mass' [-Wunused-function]
    4250 :info:destroot static float get_pte_mass(const int idx)
    4251 :info:destroot              ^
    4252 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: unused function 'get_pte_vdw_radius' [-Wunused-function]
    4253 :info:destroot static float get_pte_vdw_radius(const int idx)
    4254 :info:destroot              ^
    4255 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: unused function 'get_pte_idx' [-Wunused-function]
    4256 :info:destroot static int get_pte_idx(const char *label)
    4257 :info:destroot            ^
    4258 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function]
    4259 :info:destroot static int get_pte_idx_from_string(const char *label) {
    4260 :info:destroot            ^
    4261 :info:destroot contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp:98:14: warning: unused function 'open_mmcif_write' [-Wunused-function]
    4262 :info:destroot static void *open_mmcif_write(const char *filename, const char *filetype,
    4263 :info:destroot              ^
    4264 :info:destroot 7 warnings generated.
    4265 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4266 :info:destroot In file included from modules/cealign/src/ccealignmodule.cpp:32:
    4267 :info:destroot In file included from modules/cealign/src/ccealignmodule.H:37:
    4268 :info:destroot In file included from modules/cealign/src/tnt/tnt.h:43:
    4269 :info:destroot modules/cealign/src/tnt/tnt_matrix.h:549:15: warning: unused variable 'N' [-Wunused-variable]
    4270 :info:destroot     Subscript N = A.num_cols();
    4271 :info:destroot               ^
    4272 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4273 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -ffast-math -funroll-loops -O3 -g -fcommon
    4274 :info:destroot 1 warning generated.
    4275 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c build/generated/ShaderText.c -o build/temp.macosx-10.9-x86_64-2.7/build/generated/ShaderText.o -ffast-math -funroll-loops -O3 -g -fcommon
    4276 :info:destroot /usr/bin/clang++ -bundle -undefined dynamic_lookup -L/opt/local/lib -Wl,-headerpad_max_install_names -L/opt/local/lib/db48 build/temp.macosx-10.9-x86_64-2.7/ov/src/ov_utility.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVContext.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVHeap.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVHeapArray.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVLexicon.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVOneToAny.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVOneToOne.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVRandom.o build/temp.macosx-10.9-x86_64-2.7/layer0/Block.o build/temp.macosx-10.9-x86_64-2.7/layer0/Crystal.o build/temp.macosx-10.9-x86_64-2.7/layer0/Debug.o build/temp.macosx-10.9-x86_64-2.7/layer0/Deferred.o build/temp.macosx-10.9-x86_64-2.7/layer0/Err.o build/temp.macosx-10.9-x86_64-2.7/layer0/Feedback.o build/temp.macosx-10.9-x86_64-2.7/layer0/Field.o build/temp.macosx-10.9-x86_64-2.7/layer0/Isosurf.o build/temp.macosx-10.9-x86_64-2.7/layer0/Map.o build/temp.macosx-10.9-x86_64-2.7/layer0/Match.o build/temp.macosx-10.9-x86_64-2.7/layer0/Matrix.o build/temp.macosx-10.9-x86_64-2.7/layer0/MemoryCache.o build/temp.macosx-10.9-x86_64-2.7/layer0/MemoryDebug.o build/temp.macosx-10.9-x86_64-2.7/layer0/MyPNG.o build/temp.macosx-10.9-x86_64-2.7/layer0/os_gl.o build/temp.macosx-10.9-x86_64-2.7/layer0/Parse.o build/temp.macosx-10.9-x86_64-2.7/layer0/Pixmap.o build/temp.macosx-10.9-x86_64-2.7/layer0/Queue.o build/temp.macosx-10.9-x86_64-2.7/layer0/Raw.o build/temp.macosx-10.9-x86_64-2.7/layer0/ShaderMgr.o build/temp.macosx-10.9-x86_64-2.7/layer0/Sphere.o build/temp.macosx-10.9-x86_64-2.7/layer0/Tetsurf.o build/temp.macosx-10.9-x86_64-2.7/layer0/Texture.o build/temp.macosx-10.9-x86_64-2.7/layer0/Tracker.o build/temp.macosx-10.9-x86_64-2.7/layer0/Triangle.o build/temp.macosx-10.9-x86_64-2.7/layer0/Util.o build/temp.macosx-10.9-x86_64-2.7/layer0/Vector.o build/temp.macosx-10.9-x86_64-2.7/layer0/Word.o build/temp.macosx-10.9-x86_64-2.7/layer1/Basis.o build/temp.macosx-10.9-x86_64-2.7/layer1/ButMode.o build/temp.macosx-10.9-x86_64-2.7/layer1/CGO.o build/temp.macosx-10.9-x86_64-2.7/layer1/Character.o build/temp.macosx-10.9-x86_64-2.7/layer1/Color.o build/temp.macosx-10.9-x86_64-2.7/layer1/Control.o build/temp.macosx-10.9-x86_64-2.7/layer1/Extrude.o build/temp.macosx-10.9-x86_64-2.7/layer1/Font.o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUT.o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUT8x13.o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUT9x15.o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUTHel10.o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUTHel12.o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUTHel18.o build/temp.macosx-10.9-x86_64-2.7/layer1/FontType.o build/temp.macosx-10.9-x86_64-2.7/layer1/Movie.o build/temp.macosx-10.9-x86_64-2.7/layer1/Ortho.o build/temp.macosx-10.9-x86_64-2.7/layer1/P.o build/temp.macosx-10.9-x86_64-2.7/layer1/PConv.o build/temp.macosx-10.9-x86_64-2.7/layer1/Pop.o build/temp.macosx-10.9-x86_64-2.7/layer1/PyMOLObject.o build/temp.macosx-10.9-x86_64-2.7/layer1/Ray.o build/temp.macosx-10.9-x86_64-2.7/layer1/Rep.o build/temp.macosx-10.9-x86_64-2.7/layer1/Scene.o build/temp.macosx-10.9-x86_64-2.7/layer1/ScrollBar.o build/temp.macosx-10.9-x86_64-2.7/layer1/Seq.o build/temp.macosx-10.9-x86_64-2.7/layer1/Setting.o build/temp.macosx-10.9-x86_64-2.7/layer1/Shaker.o build/temp.macosx-10.9-x86_64-2.7/layer1/Symmetry.o build/temp.macosx-10.9-x86_64-2.7/layer1/Text.o build/temp.macosx-10.9-x86_64-2.7/layer1/TypeFace.o build/temp.macosx-10.9-x86_64-2.7/layer1/View.o build/temp.macosx-10.9-x86_64-2.7/layer1/Wizard.o build/temp.macosx-10.9-x86_64-2.7/layer2/AtomInfo.o build/temp.macosx-10.9-x86_64-2.7/layer2/CoordSet.o build/temp.macosx-10.9-x86_64-2.7/layer2/DistSet.o build/temp.macosx-10.9-x86_64-2.7/layer2/GadgetSet.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectAlignment.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectCallback.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectCGO.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectDist.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectGadget.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectGadgetRamp.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectGroup.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMap.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMesh.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMolecule.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMolecule2.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectSlice.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectSurface.o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectVolume.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepAngle.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepCartoon.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepCylBond.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDihedral.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDistDash.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDistLabel.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDot.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepEllipsoid.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepLabel.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepMesh.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepNonbonded.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepNonbondedSphere.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepRibbon.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepSphere.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepSurface.o build/temp.macosx-10.9-x86_64-2.7/layer2/RepWireBond.o build/temp.macosx-10.9-x86_64-2.7/layer2/Sculpt.o build/temp.macosx-10.9-x86_64-2.7/layer2/SculptCache.o build/temp.macosx-10.9-x86_64-2.7/layer2/VFont.o build/temp.macosx-10.9-x86_64-2.7/layer3/Editor.o build/temp.macosx-10.9-x86_64-2.7/layer3/Executive.o build/temp.macosx-10.9-x86_64-2.7/layer3/PlugIOManager.o build/temp.macosx-10.9-x86_64-2.7/layer3/Seeker.o build/temp.macosx-10.9-x86_64-2.7/layer3/Selector.o build/temp.macosx-10.9-x86_64-2.7/layer4/Cmd.o build/temp.macosx-10.9-x86_64-2.7/layer4/Export.o build/temp.macosx-10.9-x86_64-2.7/layer4/Menu.o build/temp.macosx-10.9-x86_64-2.7/layer4/PopUp.o build/temp.macosx-10.9-x86_64-2.7/layer5/main.o build/temp.macosx-10.9-x86_64-2.7/layer5/PyMOL.o build/temp.macosx-10.9-x86_64-2.7/layer5/TestPyMOL.o build/temp.macosx-10.9-x86_64-2.7/modules/cealign/src/ccealignmodule.o build/temp.macosx-10.9-x86_64-2.7/build/generated/ShaderText.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mmcif.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -L/opt/local/lib -L/usr/lib -L/usr/X11/lib -lpng -lfreetype -lGLEW -lGL -lGLU -lglut -o build/lib.macosx-10.9-x86_64-2.7/pymol/_cmd.so
    4277 :info:destroot building 'chempy.champ._champ' extension
    4278 :info:destroot creating build/temp.macosx-10.9-x86_64-2.7/contrib/champ
    4279 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/champ_module.o
    4280 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/champ.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/champ.o
    4281 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/chiral.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/chiral.o
    4282 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/err2.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/err2.o
    4283 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/feedback2.o
    4284 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/list.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/list.o
    4285 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/os_memory.o
    4286 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/sort.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/sort.o
    4287 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/strblock.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/strblock.o
    4288 :info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/vla.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/vla.o
    4289 :info:destroot /usr/bin/clang -bundle -undefined dynamic_lookup -L/opt/local/lib -Wl,-headerpad_max_install_names -L/opt/local/lib/db48 build/temp.macosx-10.9-x86_64-2.7/contrib/champ/champ.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/champ_module.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/chiral.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/err2.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/feedback2.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/list.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/os_memory.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/sort.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/strblock.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/vla.o -o build/lib.macosx-10.9-x86_64-2.7/chempy/champ/_champ.so
    4290 :info:destroot running install_lib
    4291 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework
    4292 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions
    4293 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7
    4294 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib
    4295 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
    4296 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages
    4297 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4298 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4299 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/arc.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4300 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bmin
    4301 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/bmin/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bmin
    4302 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/bmin/commands.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bmin
    4303 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/bmin/realtime.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bmin
    4304 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/bmin/state.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bmin
    4305 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/bmin/util.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bmin
    4306 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/bond_amber.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4307 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/bond_mmff.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4308 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/bonds.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4309 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/brick.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4310 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/cc1.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4311 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/cex.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4312 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/champ
    4313 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/champ/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/champ
    4314 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/champ/_champ.so -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/champ
    4315 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/champ/amber99.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/champ
    4316 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/champ/assign.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/champ
    4317 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/champ/formal_charges.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/champ
    4318 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/charge.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4319 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/cif.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4320 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/cpv.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4321 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/dictdb.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4322 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/fast
    4323 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/fast/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/fast
    4324 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/fragments
    4325 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/fragments/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/fragments
    4326 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/gamess1.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4327 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/gms.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4328 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/hetatm.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4329 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/io.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4330 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/lst.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4331 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/mae.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4332 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/map.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4333 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/mass.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4334 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/mmd.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4335 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/models.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4336 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/mol.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4337 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/mol2.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4338 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/neighbor.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4339 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/pdb.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4340 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/pkl.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4341 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/place.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4342 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/protein.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4343 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/protein_amber.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4344 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/protein_amber99.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4345 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/protein_mmff.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4346 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/protein_residues.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4347 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/sdf.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4348 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/solvate.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4349 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/tinker
    4350 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/tinker/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/tinker
    4351 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/tinker/amber.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/tinker
    4352 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/tinker/keyword.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/tinker
    4353 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/tinker/realtime.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/tinker
    4354 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/tinker/state.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/tinker
    4355 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/water_amber.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4356 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/water_residues.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4357 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/xyz.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
    4358 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
    4359 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
    4360 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/ColorEditor.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
    4361 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/Demo.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
    4362 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/PMGApp.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
    4363 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/PyMOLMapLoad.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
    4364 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/SetEditor.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
    4365 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/Setting.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
    4366 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins
    4367 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins
    4368 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins/demo
    4369 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/demo/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins/demo
    4370 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins/normal
    4371 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins/normal
    4372 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal/builder.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins/normal
    4373 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal/ModalWindow.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins/normal
    4374 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/startup
    4375 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/startup
    4376 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup/apbs_tools.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/startup
    4377 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup/remote_pdb_load.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/startup
    4378 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/TextEditor.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
    4379 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/volume.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
    4380 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_wx
    4381 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_wx/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_wx
    4382 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4383 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4384 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/_cmd.so -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4385 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/api.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4386 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/callback.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4387 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/cgo.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4388 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/checking.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4389 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/cmd.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4390 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/colorramping.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4391 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/commanding.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4392 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/completing.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4393 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/computing.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4394 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/constants.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4395 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/constants_palette.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4396 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/contrib
    4397 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/contrib/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/contrib
    4398 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/controlling.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4399 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/creating.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4400 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/editing.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4401 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/editor.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4402 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/embed
    4403 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/embed/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/embed
    4404 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/embed/epymol
    4405 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/embed/epymol/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/embed/epymol
    4406 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/embed/wxpymol
    4407 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/embed/wxpymol/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/embed/wxpymol
    4408 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/experimenting.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4409 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/exporting.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4410 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/externing.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4411 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/feedingback.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4412 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/fitting.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4413 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/gui.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4414 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/headering.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4415 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/helping.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4416 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/importing.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4417 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/internal.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4418 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/invocation.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4419 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/keyboard.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4420 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/keywords.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4421 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/locking.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4422 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/m4x.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4423 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/menu.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4424 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/monitoring.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4425 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/movie.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4426 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/moving.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
    4427 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl
    4428 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl
    4429 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl/gl
    4430 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/gl/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl/gl
    4431 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl/glu
    4432 :info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/glu/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl/glu
    4433 :info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl/glut
    4434 :info:destroot copying build/lib.macosx-10.9-