problem building gildas in ElCapitan

[jpinedaf (Jaime Pineda)]

Hi,

I tried to install Gildas on my desktop which I just upgraded to ElCapitan. The Macports installation is fresh, and I already have the latest XCode and gcc installed. I also used port select to select the macport installed gcc. However I get the following error message:

(cd ./built/x86_64-darwin-gfortran && /opt/local/bin/gfortran-mp-5 -dynamiclib -L/opt/local/lib -Wl,-headerpad_max_install_names -shared -o /opt/local/lib/gildas/x86_64-darwin-gfortran/lib/libsic.so -install_name /opt/local/lib/gildas/x86_64-darwin-gfortran/lib/libsic.so getcar.o ctrlc.o import-c.o sic-message-c.o sic-sicimport.o gmaster-c.o sic_python.o sic_parse_mod.o sic_inter_mod.o sic-interfaces-public.o sic-interfaces-private.o sic-interfaces.o aliasvar.o argauto.o abbrev.o analyse.o argumexp.o codefunc.o compute.o controlc.o defvar.o delete.o delvar.o desc.o dofunc.o dofuncl.o dofuncs.o dofuncd.o dofunci.o editor.o error.o evaluate.o examine.o execsic.o expand_macro.o expr.o fill.o fits.o foreign.o forme.o get.o getcom.o getlin.o hashing.o header.o help.o import.o inicli.o inihel.o interstate.o intrinsic.o let.o liste.o loop.o lun.o macro.o math.o minimize.o modify.o operand.o powell.o procedure.o prompt.o read.o reduce.o sicfits.o gmessage.o sicopt.o sic-package.o sic-python-f.o sicsay.o sicset.o sicsub.o sicvms.o siman.o sort.o stack.o symbol.o task.o transpose.o varexp.o varexp-generic.o vector.o wrpro.o xvariable.o zroutines.o gmaster.o sic-message.o \

-o /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work/gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib/libsic.so -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work/gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib -L/opt/local/lib -L/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib -L/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Versions/Current/ -lggui -lgcore -lgio -lgwcs -lgmath -lgsys -lginc -lslatec -framework Accelerate -lcfitsio -L/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib -ldl -framework CoreFoundation -lpython2.7 -lm -ldl -install_name @executable_path/../lib/libsic.so)

Undefined symbols for architecture x86_64:

"_ftvers_", referenced from:

_sicapropos_ in sicset.o _sicapropos_cfitsio_vers_ in sicset.o

ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status make[3]: * opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work/gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib/libsic.so Error 1 make[2]: * [default-install] Error 1 make[1]: * [default-install] Error 1 make: * [default-install] Error 1 Command failed: source admin/gildas-env.sh -c /opt/local/bin/gfortran-mp-5 -s /opt/local/include:/opt/local/lib:/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Versions/Current/ && export GAG_SLDFLAGS='-shared -o /opt/local/lib/gildas/x86_64-darwin-gfortran/lib/$(notdir $@) -install_name /opt/local/lib/gildas/x86_64-darwin-gfortran/lib/$(notdir $@)' && export DYLD_LIBRARY_PATH=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work/gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib && make install Exit code: 2 Error: org.macports.build for port gildas returned: command execution failed Warning: targets not executed for gildas: org.macports.activate org.macports.build org.macports.destroot org.macports.install Please see the log file for port gildas for details:

/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/main.log

To report a bug, follow the instructions in the guide:

​http://guide.macports.org/#project.tickets

Error: Processing of port gildas failed

The last lines of the log report gives this information: :info:build (cd ./built/x86_64-darwin-gfortran && /opt/local/bin/gfortran-mp-5 -dynamiclib -L/opt/local/lib -Wl,-headerpad_max_install_names -shared -o /opt/local/lib/gildas/x86_64-darwin-gfortran/lib/libsic.so -install_name /opt/local/lib/gildas/x86_64-darwin-gfortran/lib/libsic.so getcar.o ctrlc.o import-c.o sic-message-c.o sic-sicimport.o gmaster-c.o sic_python.o sic_parse_mod.o sic_inter_mod.o sic-interfaces-public.o sic-interfaces-private.o sic-interfaces.o aliasvar.o argauto.o abbrev.o analyse.o argumexp.o codefunc.o compute.o controlc.o defvar.o delete.o delvar.o desc.o dofunc.o dofuncl.o dofuncs.o dofuncd.o dofunci.o editor.o error.o evaluate.o examine.o execsic.o expand_macro.o expr.o fill.o fits.o foreign.o forme.o get.o getcom.o getlin.o hashing.o header.o help.o import.o inicli.o inihel.o interstate.o intrinsic.o let.o liste.o loop.o lun.o macro.o math.o minimize.o modify.o operand.o powell.o procedure.o prompt.o read.o reduce.o sicfits.o gmessage.o sicopt.o sic-package.o sic-python-f.o sicsay.o sicset.o sicsub.o sicvms.o siman.o sort.o stack.o symbol.o task.o transpose.o varexp.o varexp-generic.o vector.o wrpro.o xvariable.o zroutines.o gmaster.o sic-message.o \ :info:build -o /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work/gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib/libsic.so -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work/gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib -L/opt/local/lib -L/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib -L/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Versions/Current/ -lggui -lgcore -lgio -lgwcs -lgmath -lgsys -lginc -lslatec -framework Accelerate -lcfitsio -L/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib -ldl -framework CoreFoundation -lpython2.7 -lm -ldl -install_name @executable_path/../lib/libsic.so) :info:build Undefined symbols for architecture x86_64: :info:build "_ftvers_", referenced from: :info:build _sicapropos_ in sicset.o :info:build _sicapropos_cfitsio_vers_ in sicset.o :info:build ld: symbol(s) not found for architecture x86_64 :info:build collect2: error: ld returned 1 exit status :info:build make[3]: * opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work/gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib/libsic.so Error 1 :info:build make[2]: * [default-install] Error 1 :info:build make[1]: * [default-install] Error 1 :info:build make: * [default-install] Error 1 :info:build Command failed: source admin/gildas-env.sh -c /opt/local/bin/gfortran-mp-5 -s /opt/local/include:/opt/local/lib:/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Versions/Current/ && export GAG_SLDFLAGS='-shared -o /opt/local/lib/gildas/x86_64-darwin-gfortran/lib/$(notdir $@) -install_name /opt/local/lib/gildas/x86_64-darwin-gfortran/lib/$(notdir $@)' && export DYLD_LIBRARY_PATH=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work/gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib && make install :info:build Exit code: 2 :error:build org.macports.build for port gildas returned: command execution failed :debug:build Error code: NONE :debug:build Backtrace: command execution failed

while executing

"proc-org.macports.build-build-0 org.macports.build"

("eval" body line 1) invoked from within

"eval $procedure $targetname" :info:build Warning: targets not executed for gildas: org.macports.activate org.macports.build org.macports.destroot org.macports.install :notice:build Please see the log file for port gildas for details:

/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/main.log

Cheers, Jaime