Ticket #34542: upgrade atlas.txt

File upgrade atlas.txt, 18.8 KB (added by shawathome@…, 12 years ago)
Line 
1mike:~ michaelshaw$ sudo port upgrade atlas
2--->  Fetching archive for atlas
3--->  Attempting to fetch atlas-3.9.75_0.darwin_10.x86_64.tbz2 from http://packages.macports.org/atlas
4--->  Attempting to fetch atlas-3.9.75_0.darwin_10.x86_64.tbz2.rmd160 from http://packages.macports.org/atlas
5--->  Installing atlas @3.9.75_0
6--->  Cleaning atlas
7--->  Deactivating atlas @3.9.47_0+gcc44
8--->  Cleaning atlas
9--->  Activating atlas @3.9.75_0
10--->  Cleaning atlas
11--->  Updating database of binaries: 100.0%
12--->  Scanning binaries for linking errors: 100.0%
13--->  Found 60 broken file(s), matching files to ports
14--->  Found 14 broken port(s), determining rebuild order
15--->  Rebuilding in order
16     poppler @0.18.4
17     atlas @3.9.75
18     py25-numpy @1.6.1 +atlas+gcc44
19     py25-pygtksourceview @2.6.0
20     py26-numpy @1.6.1 +atlas+gcc44
21     py26-pygtksourceview @2.10.1
22     py27-numpy @1.6.1 +atlas+gcc44
23     agave @0.4.7
24     ffmpeg @0.7.11
25     gimp2 @2.6.12 +help_browser+python27
26     gimp-jp2 @2.2.0
27     strigi @0.7.5
28     kdelibs4 @4.7.2
29     kde4-runtime @4.7.2
30--->  Computing dependencies for poppler
31--->  Dependencies to be installed: openjpeg
32Portfile changed since last build; discarding previous state.
33--->  Fetching archive for openjpeg
34--->  Attempting to fetch openjpeg-1.5.0_1.darwin_10.x86_64.tbz2 from http://packages.macports.org/openjpeg
35--->  Attempting to fetch openjpeg-1.5.0_1.darwin_10.x86_64.tbz2.rmd160 from http://packages.macports.org/openjpeg
36--->  Installing openjpeg @1.5.0_1
37--->  Activating openjpeg @1.5.0_1
38--->  Cleaning openjpeg
39--->  Cleaning poppler
40--->  Cleaning atlas
41--->  Computing dependencies for py25-numpy
42--->  Cleaning py25-numpy
43--->  Computing dependencies for py25-pygtksourceview
44--->  Cleaning py25-pygtksourceview
45--->  Computing dependencies for py26-numpy
46--->  Cleaning py26-numpy
47--->  Computing dependencies for py26-pygtksourceview
48--->  Cleaning py26-pygtksourceview
49--->  Computing dependencies for py27-numpy
50--->  Cleaning py27-numpy
51--->  Computing dependencies for agave
52--->  Cleaning agave
53--->  Computing dependencies for ffmpeg
54--->  Fetching archive for ffmpeg
55--->  Attempting to fetch ffmpeg-0.7.11_1+mmx.darwin_10.x86_64.tbz2 from http://packages.macports.org/ffmpeg
56--->  Fetching distfiles for ffmpeg
57--->  Attempting to fetch ffmpeg-0.7.11.tar.bz2 from http://distfiles.macports.org/ffmpeg
58--->  Verifying checksum(s) for ffmpeg
59--->  Extracting ffmpeg
60--->  Applying patches to ffmpeg
61--->  Configuring ffmpeg
62--->  Building ffmpeg
63--->  Staging ffmpeg into destroot
64--->  Installing ffmpeg @0.7.11_1+mmx
65--->  Cleaning ffmpeg
66--->  Computing dependencies for ffmpeg
67--->  Deactivating ffmpeg @0.7.11_1
68--->  Cleaning ffmpeg
69--->  Activating ffmpeg @0.7.11_1+mmx
70
71*******
72******* This build of ffmpeg includes GPLed code and
73******* is therefore licensed under GPL v2 or later.
74*******
75******* The following modules are GPLed:
76*******
77*******      postproc
78*******      libx264
79*******      libxvid
80*******
81******* To include all nonfree, GPLed and LGPL code use variant +nonfree
82******* To remove nonfree and GPLed code leaving only LGPL code use variant +no_gpl
83*******
84
85--->  Cleaning ffmpeg
86--->  Computing dependencies for gimp2
87--->  Cleaning gimp2
88--->  Computing dependencies for gimp-jp2
89--->  Cleaning gimp-jp2
90--->  Computing dependencies for strigi
91--->  Cleaning strigi
92--->  Computing dependencies for kdelibs4
93--->  Fetching archive for kdelibs4
94--->  Attempting to fetch kdelibs4-4.8.3_0.darwin_10.x86_64.tbz2 from http://packages.macports.org/kdelibs4
95--->  Fetching distfiles for kdelibs4
96--->  Attempting to fetch kdelibs-4.8.3.tar.xz from http://mirror.facebook.net/kde/stable/4.8.3/src/
97--->  Verifying checksum(s) for kdelibs4
98--->  Extracting kdelibs4
99--->  Applying patches to kdelibs4
100--->  Configuring kdelibs4
101--->  Building kdelibs4
102--->  Staging kdelibs4 into destroot
103--->  Installing kdelibs4 @4.8.3_0
104--->  Cleaning kdelibs4
105--->  Computing dependencies for kdelibs4
106--->  Deactivating kde4-runtime @4.7.2_0
107--->  Deactivating kdelibs4 @4.7.2_0
108--->  Cleaning kdelibs4
109--->  Activating kdelibs4 @4.8.3_0
110##########################################################
111# Don't forget that dbus needs to be started as the local
112# user (not with sudo) before any KDE programs will launch
113# To start it run the following command:                 
114# launchctl load -w /Library/LaunchAgents/org.freedesktop.dbus-session.plist
115##########################################################
116--->  Cleaning kdelibs4
117--->  Computing dependencies for kde4-runtime
118--->  Fetching archive for kde4-runtime
119--->  Attempting to fetch kde4-runtime-4.8.3_0.darwin_10.x86_64.tbz2 from http://packages.macports.org/kde4-runtime
120--->  Fetching distfiles for kde4-runtime
121--->  Attempting to fetch kde-runtime-4.8.3.tar.xz from http://mirror.facebook.net/kde/stable/4.8.3/src/
122--->  Verifying checksum(s) for kde4-runtime
123--->  Extracting kde4-runtime
124--->  Applying patches to kde4-runtime
125--->  Configuring kde4-runtime
126--->  Building kde4-runtime
127--->  Staging kde4-runtime into destroot
128--->  Installing kde4-runtime @4.8.3_0
129--->  Cleaning kde4-runtime
130--->  Computing dependencies for kde4-runtime
131--->  Activating kde4-runtime @4.8.3_0
132##########################################################
133# Don't forget that dbus needs to be started as the local
134# user (not with sudo) before any KDE programs will launch
135# To start it run the following command:                 
136# launchctl load -w /Library/LaunchAgents/org.freedesktop.dbus-session.plist
137##########################################################
138--->  Cleaning kde4-runtime
139--->  Updating database of binaries: 100.0%
140--->  Scanning binaries for linking errors: 100.0%
141--->  Found 29 broken file(s), matching files to ports
142--->  Found 9 broken port(s), determining rebuild order
143--->  Rebuilding in order
144     gimp2 @2.6.12 +help_browser+python27
145     strigi @0.7.5
146     atlas @3.9.75
147     py25-numpy @1.6.1 +atlas+gcc44
148     py25-pygtksourceview @2.6.0
149     py26-numpy @1.6.1 +atlas+gcc44
150     py26-pygtksourceview @2.10.1
151     py27-numpy @1.6.1 +atlas+gcc44
152     agave @0.4.7
153--->  Computing dependencies for gimp2
154--->  Cleaning gimp2
155--->  Unable to uninstall gimp2 @2.6.12_0+help_browser+python27, the following ports depend on it:
156--->    gimp-app @2.6.0_1
157--->    gimp-app @2.6.0_2
158--->    gimp-app @2.6.11_0
159--->    gimp-app @2.6.11_1
160--->    gimp-app @2.6.12_0
161--->    gimp-jp2 @2.2.0_3
162--->    gimp-jp2 @2.2.0_4
163--->    gimp-lqr-plugin @0.7.1_0
164--->    gimp-lqr-plugin @0.7.1_1
165--->    gutenprint @5.2.3_2
166--->    gutenprint @5.2.3_3
167--->    gutenprint @5.2.7_0
168--->    icns-gimp @0.1_0
169--->    icns-gimp @0.1_1
170--->    ufraw @0.17_0
171--->    ufraw @0.17_1
172--->    ufraw @0.17_2
173--->    ufraw @0.18_0
174--->    ufraw @0.18_1
175--->    xsane @0.996_3
176--->    xsane @0.996_4
177--->    xsane @0.998_0
178Warning: Uninstall forced.  Proceeding despite dependencies.
179--->  Deactivating gimp2 @2.6.12_0+help_browser+python27
180--->  Unable to deactivate gimp2 @2.6.12_0+help_browser+python27, the following ports depend on it:
181--->    gimp-app @2.6.12_0
182--->    gimp-jp2 @2.2.0_4
183--->    gimp-lqr-plugin @0.7.1_1
184--->    gutenprint @5.2.7_0
185--->    icns-gimp @0.1_1
186--->    ufraw @0.18_1
187--->    xsane @0.998_0
188Warning: Deactivate forced.  Proceeding despite dependencies.
189--->  Cleaning gimp2
190--->  Uninstalling gimp2 @2.6.12_0+help_browser+python27
191--->  Cleaning gimp2
192--->  Computing dependencies for gimp2
193--->  Fetching distfiles for gimp2
194--->  Attempting to fetch gimp-2.6.12.tar.bz2 from http://distfiles.macports.org/gimp2
195--->  Verifying checksum(s) for gimp2
196--->  Extracting gimp2
197--->  Applying patches to gimp2
198--->  Configuring gimp2
199--->  Building gimp2
200--->  Staging gimp2 into destroot
201--->  Installing gimp2 @2.6.12_0+help_browser+python27
202--->  Activating gimp2 @2.6.12_0+help_browser+python27
203--->  Cleaning gimp2
204--->  Computing dependencies for strigi
205--->  Cleaning strigi
206--->  Unable to uninstall strigi @0.7.5_1, the following ports depend on it:
207--->    kdelibs4 @4.4.5_2
208--->    kdelibs4 @4.6.1_0
209--->    kdelibs4 @4.6.4_0
210--->    kdelibs4 @4.6.5_0
211--->    kdelibs4 @4.6.5_2
212--->    kdelibs4 @4.7.0_0
213--->    kdelibs4 @4.7.0_1
214--->    kdelibs4 @4.7.1_0
215--->    kdelibs4 @4.7.1_1
216--->    kdelibs4 @4.7.2_0
217--->    kdelibs4 @4.8.3_0
218--->    soprano @2.4.4_0
219--->    soprano @2.5.2_0
220--->    soprano @2.5.63_0
221--->    soprano @2.6.0_0
222--->    soprano @2.6.51_0
223--->    soprano @2.6.51_1
224--->    soprano @2.6.52_1
225--->    soprano @2.6.52_2
226--->    soprano @2.7.0_0
227--->    soprano @2.7.4_0
228Warning: Uninstall forced.  Proceeding despite dependencies.
229--->  Deactivating strigi @0.7.5_1
230--->  Unable to deactivate strigi @0.7.5_1, the following ports depend on it:
231--->    kdelibs4 @4.8.3_0
232--->    soprano @2.7.4_0
233Warning: Deactivate forced.  Proceeding despite dependencies.
234--->  Cleaning strigi
235--->  Uninstalling strigi @0.7.5_1
236--->  Cleaning strigi
237--->  Computing dependencies for strigi
238--->  Fetching distfiles for strigi
239--->  Verifying checksum(s) for strigi
240--->  Extracting strigi
241--->  Applying patches to strigi
242--->  Configuring strigi
243--->  Building strigi
244--->  Staging strigi into destroot
245--->  Installing strigi @0.7.5_1
246--->  Activating strigi @0.7.5_1
247##########################################################
248# Don't forget that dbus needs to be started as the local
249# user (not with sudo) before any KDE programs will launch
250# To start it run the following command:                 
251# launchctl load -w /Library/LaunchAgents/org.freedesktop.dbus-session.plist
252##########################################################
253--->  Cleaning strigi
254--->  Cleaning atlas
255--->  Unable to uninstall atlas @3.9.75_0, the following ports depend on it:
256--->    py25-numpy @1.4.1_1+gcc44
257--->    py25-numpy @1.5.0_1+atlas+gcc44
258--->    py25-numpy @1.5.1_1+atlas+gcc44
259--->    py25-numpy @1.6.0_0+atlas+gcc44
260--->    py25-numpy @1.6.1_0+atlas+gcc44
261--->    py25-numpy @1.6.1_1+atlas+gcc44
262--->    py26-numpy @1.6.1_1+atlas+gcc44
263--->    py26-numpy @1.4.1_1+gcc44
264--->    py26-numpy @1.5.0_1+atlas+gcc44
265--->    py26-numpy @1.5.1_0+atlas+gcc44
266--->    py26-numpy @1.5.1_1+atlas+gcc44
267--->    py26-numpy @1.6.0_0+atlas+gcc44
268--->    py26-numpy @1.6.1_0+atlas+gcc44
269--->    py27-numpy @1.6.0_0+atlas+gcc44
270--->    py27-numpy @1.6.1_0+atlas+gcc44
271--->    py27-numpy @1.6.1_1+atlas+gcc44
272Warning: Uninstall forced.  Proceeding despite dependencies.
273--->  Deactivating atlas @3.9.75_0
274--->  Unable to deactivate atlas @3.9.75_0, the following ports depend on it:
275--->    py25-numpy @1.6.1_1+atlas+gcc44
276--->    py26-numpy @1.6.1_1+atlas+gcc44
277--->    py27-numpy @1.6.1_1+atlas+gcc44
278Warning: Deactivate forced.  Proceeding despite dependencies.
279--->  Cleaning atlas
280--->  Uninstalling atlas @3.9.75_0
281--->  Cleaning atlas
282--->  Computing dependencies for atlas
283--->  Dependencies to be installed: gcc46 cloog isl libmpc ppl glpk
284--->  Fetching distfiles for isl
285--->  Attempting to fetch isl-0.07.tar.bz2 from http://distfiles.macports.org/isl
286--->  Verifying checksum(s) for isl
287--->  Extracting isl
288--->  Applying patches to isl
289--->  Configuring isl
290--->  Building isl
291--->  Staging isl into destroot
292--->  Installing isl @0.07_0
293--->  Activating isl @0.07_0
294--->  Cleaning isl
295--->  Fetching distfiles for cloog
296--->  Attempting to fetch cloog-0.16.3.tar.gz from http://distfiles.macports.org/cloog
297--->  Verifying checksum(s) for cloog
298--->  Extracting cloog
299--->  Applying patches to cloog
300--->  Configuring cloog
301--->  Building cloog
302--->  Staging cloog into destroot
303--->  Installing cloog @0.16.3_0
304--->  Activating cloog @0.16.3_0
305--->  Cleaning cloog
306--->  Fetching distfiles for libmpc
307--->  Attempting to fetch mpc-0.9.tar.gz from http://distfiles.macports.org/libmpc
308--->  Verifying checksum(s) for libmpc
309--->  Extracting libmpc
310--->  Configuring libmpc
311--->  Building libmpc
312--->  Staging libmpc into destroot
313--->  Installing libmpc @0.9_0
314--->  Activating libmpc @0.9_0
315--->  Cleaning libmpc
316--->  Fetching distfiles for glpk
317--->  Attempting to fetch glpk-4.47.tar.gz from http://mirror.facebook.net/gnu/gnu/glpk
318--->  Attempting to fetch glpk-4.47.tar.gz from http://distfiles.macports.org/glpk
319--->  Verifying checksum(s) for glpk
320--->  Extracting glpk
321--->  Configuring glpk
322--->  Building glpk
323--->  Staging glpk into destroot
324--->  Installing glpk @4.47_0
325--->  Activating glpk @4.47_0
326--->  Cleaning glpk
327--->  Fetching distfiles for ppl
328--->  Attempting to fetch ppl-0.12.1.tar.bz2 from http://distfiles.macports.org/ppl
329--->  Verifying checksum(s) for ppl
330--->  Extracting ppl
331--->  Configuring ppl
332--->  Building ppl
333--->  Staging ppl into destroot
334--->  Installing ppl @0.12.1_2
335--->  Activating ppl @0.12.1_2
336--->  Cleaning ppl
337--->  Fetching distfiles for gcc46
338--->  Attempting to fetch gcc-4.6.3.tar.bz2 from http://mirror.facebook.net/gnu/gnu/gcc/gcc-4.6.3
339--->  Attempting to fetch gcc-4.6.3.tar.bz2 from http://distfiles.macports.org/gcc46
340--->  Attempting to fetch ecj-4.5.jar from http://distfiles.macports.org/gcc46
341--->  Verifying checksum(s) for gcc46
342--->  Extracting gcc46
343--->  Configuring gcc46
344--->  Building gcc46
345--->  Staging gcc46 into destroot
346--->  Installing gcc46 @4.6.3_2
347--->  Activating gcc46 @4.6.3_2
348--->  Cleaning gcc46
349--->  Fetching distfiles for atlas
350--->  Attempting to fetch atlas3.9.75.tar.bz2 from http://distfiles.macports.org/atlas
351--->  Attempting to fetch lapack-3.4.0.tgz from http://distfiles.macports.org/atlas
352--->  Verifying checksum(s) for atlas
353--->  Extracting atlas
354--->  Applying patches to atlas
355--->  Configuring atlas
356--->  Building atlas
357--->  Staging atlas into destroot
358--->  Installing atlas @3.9.75_0
359--->  Activating atlas @3.9.75_0
360--->  Cleaning atlas
361--->  Computing dependencies for py25-numpy
362--->  Cleaning py25-numpy
363--->  Unable to uninstall py25-numpy @1.6.1_1+atlas+gcc44, the following ports depend on it:
364--->    py25-cairo @1.8.2_0
365--->    py25-cairo @1.8.2_1
366Warning: Uninstall forced.  Proceeding despite dependencies.
367--->  Deactivating py25-numpy @1.6.1_1+atlas+gcc44
368--->  Unable to deactivate py25-numpy @1.6.1_1+atlas+gcc44, the following ports depend on it:
369--->    py25-cairo @1.8.2_1
370Warning: Deactivate forced.  Proceeding despite dependencies.
371--->  Cleaning py25-numpy
372--->  Uninstalling py25-numpy @1.6.1_1+atlas+gcc44
373--->  Cleaning py25-numpy
374--->  Computing dependencies for py25-numpy
375--->  Fetching distfiles for py25-numpy
376--->  Verifying checksum(s) for py25-numpy
377--->  Extracting py25-numpy
378--->  Applying patches to py25-numpy
379--->  Configuring py25-numpy
380--->  Building py25-numpy
381--->  Staging py25-numpy into destroot
382--->  Installing py25-numpy @1.6.1_1+atlas+gcc44
383--->  Activating py25-numpy @1.6.1_1+atlas+gcc44
384--->  Cleaning py25-numpy
385--->  Computing dependencies for py25-pygtksourceview
386--->  Cleaning py25-pygtksourceview
387--->  Unable to uninstall py25-pygtksourceview @2.6.0_0, the following ports depend on it:
388--->    gedit @2.26.3_0
389Warning: Uninstall forced.  Proceeding despite dependencies.
390--->  Deactivating py25-pygtksourceview @2.6.0_0
391--->  Cleaning py25-pygtksourceview
392--->  Uninstalling py25-pygtksourceview @2.6.0_0
393--->  Cleaning py25-pygtksourceview
394--->  Computing dependencies for py25-pygtksourceview
395--->  Fetching distfiles for py25-pygtksourceview
396--->  Verifying checksum(s) for py25-pygtksourceview
397--->  Extracting py25-pygtksourceview
398--->  Configuring py25-pygtksourceview
399--->  Building py25-pygtksourceview
400--->  Staging py25-pygtksourceview into destroot
401--->  Installing py25-pygtksourceview @2.6.0_0
402--->  Activating py25-pygtksourceview @2.6.0_0
403--->  Cleaning py25-pygtksourceview
404--->  Computing dependencies for py26-numpy
405--->  Cleaning py26-numpy
406--->  Computing dependencies for py26-pygtksourceview
407--->  Cleaning py26-pygtksourceview
408--->  Unable to uninstall py26-pygtksourceview @2.10.1_0, the following ports depend on it:
409--->    gedit @2.30.4_0
410--->    gedit @2.30.4_2
411Warning: Uninstall forced.  Proceeding despite dependencies.
412--->  Deactivating py26-pygtksourceview @2.10.1_0
413--->  Cleaning py26-pygtksourceview
414--->  Uninstalling py26-pygtksourceview @2.10.1_0
415--->  Cleaning py26-pygtksourceview
416--->  Computing dependencies for py26-pygtksourceview
417--->  Fetching distfiles for py26-pygtksourceview
418--->  Verifying checksum(s) for py26-pygtksourceview
419--->  Extracting py26-pygtksourceview
420--->  Configuring py26-pygtksourceview
421--->  Building py26-pygtksourceview
422--->  Staging py26-pygtksourceview into destroot
423--->  Installing py26-pygtksourceview @2.10.1_0
424--->  Activating py26-pygtksourceview @2.10.1_0
425--->  Cleaning py26-pygtksourceview
426--->  Computing dependencies for py27-numpy
427--->  Cleaning py27-numpy
428--->  Deactivating py27-numpy @1.6.1_1+atlas+gcc44
429--->  Cleaning py27-numpy
430--->  Uninstalling py27-numpy @1.6.1_1+atlas+gcc44
431--->  Cleaning py27-numpy
432--->  Computing dependencies for py27-numpy
433--->  Fetching distfiles for py27-numpy
434--->  Verifying checksum(s) for py27-numpy
435--->  Extracting py27-numpy
436--->  Applying patches to py27-numpy
437--->  Configuring py27-numpy
438--->  Building py27-numpy
439--->  Staging py27-numpy into destroot
440--->  Installing py27-numpy @1.6.1_1+atlas+gcc44
441--->  Activating py27-numpy @1.6.1_1+atlas+gcc44
442--->  Cleaning py27-numpy
443--->  Computing dependencies for agave
444--->  Cleaning agave
445--->  Deactivating agave @0.4.7_0
446--->  Cleaning agave
447--->  Uninstalling agave @0.4.7_0
448--->  Cleaning agave
449--->  Computing dependencies for agave
450--->  Fetching distfiles for agave
451--->  Verifying checksum(s) for agave
452--->  Extracting agave
453--->  Applying patches to agave
454--->  Configuring agave
455--->  Building agave
456--->  Staging agave into destroot
457--->  Installing agave @0.4.7_0
458--->  Activating agave @0.4.7_0
459--->  Cleaning agave
460--->  Updating database of binaries: 100.0%
461--->  Scanning binaries for linking errors: 100.0%
462--->  Found 7 broken file(s), matching files to ports
463--->  Found 1 broken port(s), determining rebuild order
464--->  Rebuilding in order
465     py26-numpy @1.6.1 +atlas+gcc44
466--->  Computing dependencies for py26-numpy
467--->  Cleaning py26-numpy
468--->  Scanning binaries for linking errors: 100.0%
469--->  Found 7 broken file(s), matching files to ports
470Error: Port py26-numpy is still broken after rebuiling it more than 3 times.
471Error: Please run port -d -y rev-upgrade and use the output to report a bug.
472Port py26-numpy still broken after rebuilding 3 time(s)
473    while executing
474"error "Port $portname still broken after rebuilding [expr $broken_port_counts($portname) - 1] time(s)""
475    (procedure "revupgrade_scanandrebuild" line 256)
476    invoked from within
477"revupgrade_scanandrebuild broken_port_counts $opts"
478    (procedure "macports::revupgrade" line 5)
479    invoked from within
480"macports::revupgrade $opts"
481    (procedure "action_revupgrade" line 2)
482    invoked from within
483"action_revupgrade $action $portlist $opts"
484    (procedure "action_upgrade" line 24)
485    invoked from within
486"$action_proc $action $portlist [array get global_options]"
487    (procedure "process_cmd" line 95)
488    invoked from within
489"process_cmd $remaining_args"
490    invoked from within
491"if { [llength $remaining_args] > 0 } {
492
493    # If there are remaining arguments, process those as a command
494    set exit_status [process_cmd $remaining..."
495    (file "/opt/local/bin/port" line 4784)
496mike:~ michaelshaw$