octave-3.2.2 -- build failure -- likely arpack issue

[rkcrockett@…]

Building octave +gcc43 from a fresh macports install, 10.6.1, I get:

---> Building octave Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_octave/work/octave-3.2.2" && /usr/bin/make -j2 all " returned error 2 Command output: /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o convhulln.oct pic/convhulln.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran -lqhull /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o daspk.oct pic/daspk.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dasrt.oct pic/dasrt.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dassl.oct pic/dassl.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o det.oct pic/det.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dispatch.oct pic/dispatch.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dlmread.oct pic/dlmread.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dmperm.oct pic/dmperm.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o eig.oct pic/eig.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o eigs.oct pic/eigs.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran -larpack /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o fft.oct pic/fft.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran Undefined symbols:

"_znaupd_", referenced from:

EigsComplexNonSymmetricFunc(ComplexColumnVector (*)(ComplexColumnVector const&, int&), int, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrix<ComplexMatrix>(ComplexMatrix const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrix<SparseComplexMatrix>(SparseComplexMatrix const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, int, int&, ComplexMatrix&, ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrixShift<SparseComplexMatrix>(SparseComplexMatrix const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrixShift<ComplexMatrix>(ComplexMatrix const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o

"_zneupd_", referenced from:

EigsComplexNonSymmetricFunc(ComplexColumnVector (*)(ComplexColumnVector const&, int&), int, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrix<ComplexMatrix>(ComplexMatrix const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrix<SparseComplexMatrix>(SparseComplexMatrix const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, int, int&, ComplexMatrix&, ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrixShift<SparseComplexMatrix>(SparseComplexMatrix const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrixShift<ComplexMatrix>(ComplexMatrix const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o

ld: symbol(s) not found collect2: ld returned 1 exit status make[2]: * [eigs.oct] Error 1 make[2]: * Waiting for unfinished jobs.... make[1]: * [src] Error 2 make: * [all] Error 2

Error: Status 1 encountered during processing.