Opened 12 years ago
Closed 12 years ago
#35063 closed defect (fixed)
tophat: error: use of undeclared identifier 'fseeko'; did you mean 'fseek'?
| Reported by: | richard.zuerner@… | Owned by: | haroldpimentel@… |
|---|---|---|---|
| Priority: | Normal | Milestone: | |
| Component: | ports | Version: | 2.1.1 |
| Keywords: | lion | Cc: | |
| Port: | tophat |
Description
I tried running macports to install tophat on Lion but failed. I already have cufflinks and bowtie loaded via macports and would like to continue with this install using macports as well. I found the errors in the log file (attached), but not sure how to work around them. Any help would be appreciated. Thanks!
Attachments (3)
Change History (6)
Changed 12 years ago by richard.zuerner@…
comment:1 Changed 12 years ago by ryandesign (Ryan Carsten Schmidt)
| Keywords: | lion added; RNA sequence software removed |
|---|---|
| Owner: | changed from macports-tickets@… to haroldpimentel@… |
| Summary: | tophat error on lion → tophat: error: use of undeclared identifier 'fseeko'; did you mean 'fseek'? |
The error I see in your log is:
:info:build GFaSeqGet.cpp:62:17: error: use of undeclared identifier 'fseeko'; did you mean 'fseek'?
However this was not a clean attempt, so please "sudo port clean tophat", then try again; if it fails again, attach the new main.log.
Changed 12 years ago by richard.zuerner@…
| Attachment: | main2cleaninstall.log added |
|---|
log file of second run
Changed 12 years ago by richard.zuerner@…
| Attachment: | cleantophatrun.rtf added |
|---|
screen output of run
comment:2 Changed 12 years ago by richard.zuerner@…
Hi, Thanks for the quick response. I ran the clean and install commands, but with same result. The new log file and screen output are attached as files. Thanks!
comment:3 Changed 12 years ago by jmroot (Joshua Root)
| Resolution: | → fixed |
|---|---|
| Status: | new → closed |
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main log of tophat installation. Clearly shows errors leading to problem.