root @5.34.14_0+python27: build fails with "no such file or directory: 'misc/minicern/src/zebra.o' "

[josh.berger@…]

Darwin 13.0.0
OS X 10.9
2.66 GHz Intel Core 2 Duo
XCode 5.0.2 (5A3005)
Apple LLVM version 5.0 (clang-500.2.79) (based on LLVM 3.3svn)
gcc (MacPorts gcc48 4.8.2_0) 4.8.2

Build failure when attempting to install ROOT with python 2.7. Command exectued:

sudo port install root +python27

Here is the relevant portion of the log file:

:info:build /usr/bin/clang++ -dynamiclib -single_module -Wl,-dead_strip_dylibs -install_name /opt/local/lib/root/libminicern.5.so -O2 -m64 -mmacosx-version-min=10.9 -stdlib=libc++ -o lib/libminicern.5.34\
.so misc/minicern/src/cernlib.o -ldl misc/minicern/src/hbook.o misc/minicern/src/kernlib.o misc/minicern/src/zebra.o /opt/local/lib/gcc48/gcc/x86_64-apple-darwin13/4.8.2/../../../libgfortran.dylib /opt/l\
ocal/lib/gcc48/gcc/x86_64-apple-darwin13/4.8.2/../../../libgfortran.a /opt/local/lib/gcc48/gcc/x86_64-apple-darwin13/4.8.2/libgfortranbegin.a -compatibility_version 5 -current_version 5.34.14
:info:build clang: error: no such file or directory: 'misc/minicern/src/zebra.o'
:info:build make: *** [lib/libminicern.so] Error 1
:info:build make: *** Waiting for unfinished jobs....
:info:build /usr/bin/clang -m64 -O3 -DNO_DEBUG_OUTPUT -fPIC  -mmmx  -I/opt/local/include -I/opt/local/include  -I/opt/local/include  -I../../../../graf2d/freetype/src/freetype-2.3.12/include    -c xcf.c \
-o xcf.o
:info:build /usr/bin/clang -m64 -O3 -DNO_DEBUG_OUTPUT -fPIC  -mmmx  -I/opt/local/include -I/opt/local/include  -I/opt/local/include  -I../../../../graf2d/freetype/src/freetype-2.3.12/include    -c ximage\
.c -o ximage.o
:info:build /usr/bin/clang -m64 -O3 -DNO_DEBUG_OUTPUT -fPIC  -mmmx  -I/opt/local/include -I/opt/local/include  -I/opt/local/include  -I../../../../graf2d/freetype/src/freetype-2.3.12/include    -c xpm.c \
-o xpm.o
:info:build /bin/rm -f libAfterImage.a
:info:build ar clq libAfterImage.a libungif/dgif_lib.o libungif/egif_lib.o libungif/gifalloc.o libungif/gif_err.o libungif/gif_hash.o afterbase.o asimage.o ascmap.o asfont.o asimagexml.o asstorage.o asvi\
sual.o blender.o bmp.o char2uni.o draw.o export.o imencdec.o import.o pixmap.o scanline.o transform.o ungif.o xcf.o ximage.o xpm.o
:info:build ranlib libAfterImage.a
:info:build make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_root/root/work/root/graf2d/asimage/src/libAfterImag\
e'
:info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_root/root/work/root'
:info:build Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_root/root/work/root" && /usr/bin/make -j2 -w all
:info:build Exit code: 2
:error:build org.macports.build for port root returned: command execution failed
:debug:build Error code: CHILDSTATUS 72115 2
:debug:build Backtrace: command execution failed
    while executing
"system -nice 0 $fullcmdstring"
    ("eval" body line 1)
    invoked from within
"eval system $notty $nice \$fullcmdstring"
    invoked from within
"command_exec build"
    (procedure "portbuild::build_main" line 8)
    invoked from within
"$procedure $targetname"
:info:build Warning: targets not executed for root: org.macports.activate org.macports.build org.macports.destroot org.macports.install
:notice:build Please see the log file for port root for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_root/root/main.log

First time submitting a bug report... Please let me know if there's any more information I can give you to help!

[larryv (Lawrence Velázquez)]

As per the ​MacPorts Guide, please run sudo port clean root, try the install again, and attach the entire main.log file if it fails. Being able to examine the entire log is usually helpful.

[josh.berger@…]

build log file

[josh.berger@…]

I've tried to do sudo port clean root. I've attached the full log file.

[cjones051073 (Chris Jones)]

The main problem you have is

:info:build /opt/local/bin/gfortran-mp-4.8 -O2 -m64 -std=legacy -o misc/minicern/src/zebra.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_root/root/work/root/misc/minicern/src/zebra.f 2>&1 | sed -e s/arning:/arn-Ignore:/ >&2
:info:build f951: internal compiler error: Illegal instruction: 4
:info:build 
:info:build f951: internal compiler error: Abort trap: 6
:info:build gfortran-mp-4.8: internal compiler error: Abort trap: 6 (program f951)

So it looks like something is up with your gcc48 installation. I suspect this has nothing to do with python per se, its just enabling that variant triggered a build from source, instead of via the binary tarballs.

Try googling the error "f951: internal compiler error: Illegal instruction" - This will lead you to a few other macports tickets. e.g.

​https://trac.macports.org/ticket/40439

So this is a gcc issue.

Chris

[cjones051073 (Chris Jones)]

Note I do not see this myself, nor on the build bots, so it is specific to your machine. Try some of the suggestions in the above ticket (i.e. reinstalling various ports).

Chris

[mf2k (Frank Schima)]

Please use the ​Macports Users mailing list if you continue to have issues.