coreutils @8.27_0: undefined reference to "_renameat" on x86_64 machine

[noloader (Jeffrey Walton)]

I'm attempting to update Macports 2.4.1 on an Intel Core2 x86_64 machine. The build fails with:

:info:build src/force-link.c:111:13: warning: implicit declaration of function 'renameat' is invalid in C99 [-Wimplicit-function-declaration]
:info:build       err = renameat (dstdir, dsttmp, dstdir, dstname) == 0 ? 0 : errno;
:info:build             ^
:info:build 1 warning generated.
...
:info:build /usr/bin/clang   -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o src/cp src/cp.o src/copy.o src/cp-hash.o src/extent-scan.o src/force-link.o src/selinux.o src/libver.a lib/libcoreutils.a -lintl -Wl,-framework -Wl,CoreFoundation lib/libcoreutils.a      
:info:build Undefined symbols for architecture x86_64:
:info:build   "_renameat", referenced from:
:info:build       _force_linkat in force-link.o
:info:build       _force_symlinkat in force-link.o
:info:build ld: symbol(s) not found for architecture x86_64

Several of the follwoing have not helped the issue.

$ sudo find /opt/local -name '*coreutils*' -exec rm -rf {} \;

---

$ port version
Version: 2.4.1

$ port info --maintainer coreutils
maintainer: 

---

$ cat /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/main.log
version:1
:msg:main --->  Computing dependencies for coreutils:info:main .:debug:main Checking for conflicts against coreutils
:debug:main Searching for dependency: gexpr
:debug:main Didn't find receipt, going to depspec regex for: gexpr
:debug:main Searching for dependency: xz
:debug:main Found Dependency: receipt exists for xz
:debug:main Searching for dependency: gettext
:debug:main Found Dependency: receipt exists for gettext
:debug:main Searching for dependency: gmp
:debug:main Found Dependency: receipt exists for gmp
:debug:main Searching for dependency: libiconv
:debug:main Found Dependency: receipt exists for libiconv
:debug:main Executing org.macports.main (coreutils)
:debug:main dropping privileges: euid changed to 502, egid changed to 501.
:debug:archivefetch archivefetch phase started at Fri Mar 10 09:02:44 EST 2017
:msg:archivefetch --->  Fetching archive for coreutils
:debug:archivefetch Executing org.macports.archivefetch (coreutils)
:debug:archivefetch euid/egid changed to: 0/0
:debug:archivefetch chowned /opt/local/var/macports/incoming to macports
:debug:archivefetch euid/egid changed to: 502/501
:info:archivefetch --->  coreutils-8.27_0.darwin_13.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
:msg:archivefetch --->  Attempting to fetch coreutils-8.27_0.darwin_13.x86_64.tbz2 from https://packages.macports.org/coreutils
:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
:msg:archivefetch --->  Attempting to fetch coreutils-8.27_0.darwin_13.x86_64.tbz2 from http://sea.us.packages.macports.org/macports/packages/coreutils
:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
:msg:archivefetch --->  Attempting to fetch coreutils-8.27_0.darwin_13.x86_64.tbz2 from http://lil.fr.packages.macports.org/coreutils
:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
:debug:archivefetch Privilege de-escalation not attempted as not running as root.
:debug:fetch fetch phase started at Fri Mar 10 09:02:46 EST 2017
:notice:fetch --->  Fetching distfiles for coreutils
:debug:fetch elevating privileges for fetch: euid changed to 0, egid changed to 0.
:debug:fetch dropping privileges: euid changed to 502, egid changed to 501.
:debug:fetch Executing org.macports.fetch (coreutils)
:info:fetch --->  coreutils-8.27.tar.xz does not exist in /opt/local/var/macports/distfiles/coreutils
:notice:fetch --->  Attempting to fetch coreutils-8.27.tar.xz from https://distfiles.macports.org/coreutils
:debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found
:notice:fetch --->  Attempting to fetch coreutils-8.27.tar.xz from http://mirror.cc.columbia.edu/pub/software/gnu/coreutils
:debug:fetch Privilege de-escalation not attempted as not running as root.
:debug:checksum checksum phase started at Fri Mar 10 09:02:48 EST 2017
:notice:checksum --->  Verifying checksums for coreutils
:debug:checksum Executing org.macports.checksum (coreutils)
:info:checksum --->  Checksumming coreutils-8.27.tar.xz
:debug:checksum Calculated (rmd160) is 51653577ab896b306af5ee7bb7552cb4c0c342de
:debug:checksum Correct (rmd160) checksum for coreutils-8.27.tar.xz
:debug:checksum Calculated (sha256) is 8891d349ee87b9ff7870f52b6d9312a9db672d2439d289bc57084771ca21656b
:debug:checksum Correct (sha256) checksum for coreutils-8.27.tar.xz
:debug:checksum Privilege de-escalation not attempted as not running as root.
:debug:extract extract phase started at Fri Mar 10 09:02:48 EST 2017
:notice:extract --->  Extracting coreutils
:debug:extract setting option extract.cmd to /opt/local/bin/xz
:debug:extract Executing org.macports.extract (coreutils)
:info:extract --->  Extracting coreutils-8.27.tar.xz
:debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/coreutils/coreutils-8.27.tar.xz'
:debug:extract Environment: 
:debug:extract CC_PRINT_OPTIONS='YES'
:debug:extract CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work/.CC_PRINT_OPTIONS'
:debug:extract CPATH='/opt/local/include'
:debug:extract LIBRARY_PATH='/opt/local/lib'
:debug:extract MACOSX_DEPLOYMENT_TARGET='10.9'
:info:extract Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work" && /opt/local/bin/xz -dc '/opt/local/var/macports/distfiles/coreutils/coreutils-8.27.tar.xz' | /usr/bin/tar -xf - 
:debug:extract system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work" && /opt/local/bin/xz -dc '/opt/local/var/macports/distfiles/coreutils/coreutils-8.27.tar.xz' | /usr/bin/tar -xf - 
:debug:extract euid/egid changed to: 0/0
:debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work to macports
:debug:extract euid/egid changed to: 502/501
:debug:extract Privilege de-escalation not attempted as not running as root.
:debug:patch patch phase started at Fri Mar 10 09:02:52 EST 2017
:debug:patch Executing org.macports.patch (coreutils)
:debug:patch Privilege de-escalation not attempted as not running as root.
:debug:configure configure phase started at Fri Mar 10 09:02:52 EST 2017
:notice:configure --->  Configuring coreutils
:debug:configure Preferred compilers: clang macports-clang-3.9 macports-clang-3.8 macports-clang-3.7 macports-clang-3.4 macports-llvm-gcc-4.2 apple-gcc-4.2
:debug:configure Using compiler 'Xcode Clang'
:debug:configure Executing org.macports.configure (coreutils)
:debug:configure Environment: 
:debug:configure CC='/usr/bin/clang'
:debug:configure CC_PRINT_OPTIONS='YES'
:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work/.CC_PRINT_OPTIONS'
:debug:configure CFLAGS='-pipe -Os -arch x86_64'
:debug:configure CPATH='/opt/local/include'
:debug:configure CPPFLAGS='-I/opt/local/include'
:debug:configure CXX='/usr/bin/clang++'
:debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++ -arch x86_64'
:debug:configure F77FLAGS='-m64'
:debug:configure F90FLAGS='-pipe -Os -m64'
:debug:configure FCFLAGS='-pipe -Os -m64'
:debug:configure FFLAGS='-pipe -Os'
:debug:configure FORCE_UNSAFE_CONFIGURE='1'
:debug:configure INSTALL='/usr/bin/install -c'
:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64'
:debug:configure LIBRARY_PATH='/opt/local/lib'
:debug:configure MACOSX_DEPLOYMENT_TARGET='10.9'
:debug:configure OBJC='/usr/bin/clang'
:debug:configure OBJCFLAGS='-pipe -Os -arch x86_64'
:debug:configure OBJCXX='/usr/bin/clang++'
:debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++ -arch x86_64'
:info:configure Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work/coreutils-8.27" && ./configure --prefix=/opt/local --disable-silent-rules --program-prefix=g 
:debug:configure system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work/coreutils-8.27" && ./configure --prefix=/opt/local --disable-silent-rules --program-prefix=g 
:info:configure checking for a BSD-compatible install... /usr/bin/install -c
:info:configure checking whether build environment is sane... yes
:info:configure checking for a thread-safe mkdir -p... /opt/local/bin/gmkdir -p
:info:configure checking for gawk... gawk
:info:configure checking whether make sets $(MAKE)... yes
:info:configure checking whether make supports nested variables... yes
:info:configure checking whether make supports nested variables... (cached) yes
:info:configure checking for style of include used by make... GNU
:info:configure checking for gcc... /usr/bin/clang
:info:configure checking whether the C compiler works... yes
:info:configure checking for C compiler default output file name... a.out
:info:configure checking for suffix of executables... 
:info:configure checking whether we are cross compiling... no
:info:configure checking for suffix of object files... o
:info:configure checking whether we are using the GNU C compiler... yes
:info:configure checking whether /usr/bin/clang accepts -g... yes
:info:configure checking for /usr/bin/clang option to accept ISO C89... none needed
:info:configure checking whether /usr/bin/clang understands -c and -o together... yes
:info:configure checking dependency style of /usr/bin/clang... gcc3
:info:configure checking for /usr/bin/clang option to accept ISO C99... none needed
:info:configure checking for /usr/bin/clang option to accept ISO Standard C... (cached) none needed
:info:configure checking how to run the C preprocessor... /usr/bin/clang -E
:info:configure checking for grep that handles long lines and -e... /opt/local/bin/grep
:info:configure checking for egrep... /opt/local/bin/grep -E
:info:configure checking whether /usr/bin/clang needs -traditional... no
:info:configure checking for ranlib... ranlib
:info:configure checking whether ln -s works... yes
:info:configure checking for ANSI C header files... yes
:info:configure checking for sys/types.h... yes
:info:configure checking for sys/stat.h... yes
:info:configure checking for stdlib.h... yes
:info:configure checking for string.h... yes
:info:configure checking for memory.h... yes
:info:configure checking for strings.h... yes
:info:configure checking for inttypes.h... yes
:info:configure checking for stdint.h... yes
:info:configure checking for unistd.h... yes
...
a:info:build depbase=`echo src/comm.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
:info:build     /usr/bin/clang  -I. -I./lib  -Ilib -I./lib -Isrc -I./src -I/opt/local/include   -pipe -Os -arch x86_64 -MT src/comm.o -MD -MP -MF $depbase.Tpo -c -o src/comm.o src/comm.c &&\
:info:build     mv -f $depbase.Tpo $depbase.Po
:info:build /usr/bin/clang   -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o src/comm src/comm.o src/libver.a lib/libcoreutils.a -lintl -Wl,-framework -Wl,CoreFoundation lib/libcoreutils.a 
:info:build depbase=`echo src/cp.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
:info:build     /usr/bin/clang  -I. -I./lib  -Ilib -I./lib -Isrc -I./src -I/opt/local/include   -pipe -Os -arch x86_64 -MT src/cp.o -MD -MP -MF $depbase.Tpo -c -o src/cp.o src/cp.c &&\
:info:build     mv -f $depbase.Tpo $depbase.Po
:info:build depbase=`echo src/copy.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
:info:build     /usr/bin/clang  -I. -I./lib  -Ilib -I./lib -Isrc -I./src -I/opt/local/include   -pipe -Os -arch x86_64 -MT src/copy.o -MD -MP -MF $depbase.Tpo -c -o src/copy.o src/copy.c &&\
:info:build     mv -f $depbase.Tpo $depbase.Po
:info:build depbase=`echo src/cp-hash.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
:info:build     /usr/bin/clang  -I. -I./lib  -Ilib -I./lib -Isrc -I./src -I/opt/local/include   -pipe -Os -arch x86_64 -MT src/cp-hash.o -MD -MP -MF $depbase.Tpo -c -o src/cp-hash.o src/cp-hash.c &&\
:info:build     mv -f $depbase.Tpo $depbase.Po
:info:build depbase=`echo src/extent-scan.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
:info:build     /usr/bin/clang  -I. -I./lib  -Ilib -I./lib -Isrc -I./src -I/opt/local/include   -pipe -Os -arch x86_64 -MT src/extent-scan.o -MD -MP -MF $depbase.Tpo -c -o src/extent-scan.o src/extent-scan.c &&\
:info:build     mv -f $depbase.Tpo $depbase.Po
:info:build depbase=`echo src/force-link.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
:info:build     /usr/bin/clang  -I. -I./lib  -Ilib -I./lib -Isrc -I./src -I/opt/local/include   -pipe -Os -arch x86_64 -MT src/force-link.o -MD -MP -MF $depbase.Tpo -c -o src/force-link.o src/force-link.c &&\
:info:build     mv -f $depbase.Tpo $depbase.Po
:info:build src/force-link.c:111:13: warning: implicit declaration of function 'renameat' is invalid in C99 [-Wimplicit-function-declaration]
:info:build       err = renameat (dstdir, dsttmp, dstdir, dstname) == 0 ? 0 : errno;
:info:build             ^
:info:build 1 warning generated.
:info:build depbase=`echo src/selinux.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
:info:build     /usr/bin/clang  -I. -I./lib  -Ilib -I./lib -Isrc -I./src -I/opt/local/include   -pipe -Os -arch x86_64 -MT src/selinux.o -MD -MP -MF $depbase.Tpo -c -o src/selinux.o src/selinux.c &&\
:info:build     mv -f $depbase.Tpo $depbase.Po
:info:build /usr/bin/clang   -pipe -Os -arch x86_64  -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o src/cp src/cp.o src/copy.o src/cp-hash.o src/extent-scan.o src/force-link.o src/selinux.o src/libver.a lib/libcoreutils.a -lintl -Wl,-framework -Wl,CoreFoundation lib/libcoreutils.a      
:info:build Undefined symbols for architecture x86_64:
:info:build   "_renameat", referenced from:
:info:build       _force_linkat in force-link.o
:info:build       _force_symlinkat in force-link.o
:info:build ld: symbol(s) not found for architecture x86_64
:info:build clang: error: linker command failed with exit code 1 (use -v to see invocation)
:info:build make[2]: *** [src/cp] Error 1
:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work/coreutils-8.27'
:info:build make[1]: *** [all-recursive] Error 1
:info:build make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work/coreutils-8.27'
:info:build make: *** [all] Error 2
:info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work/coreutils-8.27'
:info:build Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work/coreutils-8.27" && /usr/bin/make -w all 
:info:build Exit code: 2
:error:build Failed to build coreutils: command execution failed
:debug:build Error code: CHILDSTATUS 76168 2
:debug:build Backtrace: command execution failed
:debug:build     while executing
:debug:build "system {*}$notty {*}$nice $fullcmdstring"
:debug:build     invoked from within
:debug:build "command_exec build"
:debug:build     (procedure "portbuild::build_main" line 8)
:debug:build     invoked from within
:debug:build "$procedure $targetname"

[ryandesign (Ryan Carsten Schmidt)]

Duplicate of #53764 which was already fixed. Run sudo port selfupdate to get the fix.