Opened 7 years ago
Closed 7 years ago
#54896 closed defect (fixed)
bedtools @2.26.0: build error with Xcode 9.0
| Reported by: | ikizhvatov (Ilya Kizhvatov) | Owned by: | arjanvandervelde (Arjan van der Velde) |
|---|---|---|---|
| Priority: | Normal | Milestone: | |
| Component: | ports | Version: | 2.4.1 |
| Keywords: | Cc: | ||
| Port: | bedtools |
Description
bedtools build fails after recent update to Xcode 9 on macOS Sierra 10.12.6. Log attached.
Attachments (1)
Change History (8)
Changed 7 years ago by ikizhvatov (Ilya Kizhvatov)
comment:1 Changed 7 years ago by raimue (Rainer Müller)
- Upstream: https://github.com/arq5x/bedtools2/issues/487
- Upstream: https://github.com/arq5x/bedtools2/issues/573
- Homebrew: https://github.com/Homebrew/homebrew-science/issues/6334
As stated in the upstream report, current upstream master works, so patches need to be backported to the release version.
comment:2 Changed 7 years ago by mf2k (Frank Schima)
| Cc: | vandervelde.ag@… removed |
|---|---|
| Owner: | set to arjanvandervelde |
| Status: | new → assigned |
comment:3 Changed 7 years ago by ikizhvatov (Ilya Kizhvatov)
I am not sure if upstream works: on my system I pull master from https://github.com/arq5x/bedtools2 and the build error is the same as I reported originally for the macports build.
comment:4 Changed 7 years ago by arjanvandervelde (Arjan van der Velde)
the upstream issue doesn't seem to match exactly what you're seeing. i'll look into this. would you be able to reproduce this on another system Xcode 9 on macOS Sierra 10.12.6?
comment:5 Changed 7 years ago by arjanvandervelde (Arjan van der Velde)
https://github.com/arq5x/bedtools2/issues/573 is the same error; waiting for upstream fix.
comment:6 Changed 7 years ago by arjanvandervelde (Arjan van der Velde)
fixed; waiting for pull request to be merged. https://github.com/macports/macports-ports/pull/839
comment:7 Changed 7 years ago by arjanvandervelde (Arjan van der Velde)
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
Build log