Opened 5 years ago

Closed 3 years ago

#58008 closed defect (fixed)

py36-h5py @2.9.0_0+mpich: h5py is running against HDF5 1.10.4 when it was built against 1.8.4

Reported by: BestPotato (Josh D) Owned by: eborisch (Eric A. Borisch)
Priority: Normal Milestone:
Component: ports Version: 2.5.4
Keywords: Cc: Dave-Allured (Dave Allured)
Port: py-h5py

Description

installed HDF5 and then installed py36-h5py, both through macports. When importing h5py into python3, I get the following warning: 

/Users/<user>/.macports/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/h5py/__init__.py:75: UserWarning: h5py is running against HDF5 1.10.4 when it was built against 1.8.4, this may cause problems
  '{0}.{1}.{2}'.format(*version.hdf5_built_version_tuple)

I am running HDF5 @1.10.4_0+hl+mpich, so I don't understand how h5py was built against a version I don't have installed. It seems h5py works for the most part. Some of the self tests failed, but the code portions I need appear to be functioning.

Change History (3)

comment:1 Changed 5 years ago by mf2k (Frank Schima)

Cc: eborisch@… removed
Owner: set to eborisch
Port: py-h5py added; py36-h5py removed
Status: new → assigned

comment:2 Changed 5 years ago by Dave-Allured (Dave Allured)

Cc: Dave-Allured added

comment:3 Changed 3 years ago by eborisch (Eric A. Borisch)

Resolution: → fixed
Status: assigned → closed

This is just a case where ports need to be bumped whenever hdf5 is upgraded. Hopefully we're getting better at doing that.

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