py37-numpy @1.15.4_0+gfortran+openblas: cannot upgrade to @1.16.1_0 on High Sierra

[hugo-ribeiro (Hugo Ribeiro)]

It seems that there is an invalid option that is being passed to the linker.

/usr/bin/clang -bundle -undefined dynamic_lookup -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 build/temp.macosx-10.13-x86_64-3.7/numpy/linalg/lapack_litemodule.o build/temp.macosx-10.13-x86_64-3.7/numpy/linalg/lapack_lite/python_xerbla.o -L/opt/local/lib -Lbuild/temp.macosx-10.13-x86_64-3.7 -L/opt/local/lib -lopenblas -lopenblas -o build/lib.macosx-10.13-x86_64-3.7/numpy/linalg/lapack_lite.cpython-37m-darwin.so -undefined dynamic_lookup -bundle
ld: invalid option to -undefined [ warning | error | suppress | dynamic_lookup ]
clang: error: linker command failed with exit code 1 (use -v to see invocation)

I've also attached "main.log"

[mf2k (Frank Schima)]

I see the same error.

[lpsinger (Leo Singer)]

I'm seeing the same error on macOS Mojave 10.14.3. Attaching my build log.

[lpsinger (Leo Singer)]

Build log from Mojave

[captainproton1971 (Captain Proton)]

Getting the same building py27-numpy +gfortran +openblas on Mojave 10.14.3 (18D109).

sudo port install py27-numpy +gfortran +openblas
--->  Computing dependencies for py27-numpy
--->  Fetching archive for py27-numpy
--->  Attempting to fetch py27-numpy-1.16.1_0+gfortran+openblas.darwin_18.x86_64.tbz2 from https://packages.macports.org/py27-numpy
--->  Attempting to fetch py27-numpy-1.16.1_0+gfortran+openblas.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/py27-numpy
--->  Attempting to fetch py27-numpy-1.16.1_0+gfortran+openblas.darwin_18.x86_64.tbz2 from http://sea.us.packages.macports.org/macports/packages/py27-numpy
--->  Fetching distfiles for py27-numpy
--->  Verifying checksums for py27-numpy
--->  Extracting py27-numpy
--->  Applying patches to py27-numpy
--->  Configuring py27-numpy
--->  Building py27-numpy
Error: Failed to build py27-numpy: command execution failed
Error: See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/main.log for details.

Same error seems to be being recorded in main.log (I've attached mine too, if there's a subtle difference I've missed).

[captainproton1971 (Captain Proton)]

py27-numpy on Mojave 10.14.3 (18D109)

[michaellass (Michael Lass)]

A workaround for people needing to rebuild py-numpy now: Using +gcc8 instead of +gfortran fixes the problem for me. I tested py27-numpy and py37-numpy with +gcc8 +openblas on Mojave.

[jjstickel (Jonathan Stickel)]

Same problem on Sierra (10.12.6) with py36-numpy +gfortran +openblas, so it seems like it is not OS-specific but is rather the variants.

[michaelld (Michael Dickens)]

Guessing this issue is actually a duplicate of #58114, and thus was closed by ​https://trac.macports.org/changeset/c5dea4548c794745e202b0ba611240fbd55b3b9a/macports-ports .