Opened 7 months ago

#60841 assigned defect

relax @4.0.3: ValueError: threshold must be numeric and non-NAN, try sys.maxsize for untruncated representation

Reported by: ryandesign (Ryan Schmidt) Owned by: jwhowarth
Priority: Normal Milestone:
Component: ports Version: 2.6.2
Keywords: Cc:
Port: relax

Description

https://build.macports.org/builders/ports-10.12_x86_64-builder/builds/122802/steps/install-port/logs/stdio

scons: Reading SConscript files ...
ValueError: threshold must be numeric and non-NAN, try sys.maxsize for untruncated representation:
  File "/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_relax/relax/work/relax-4.0.3/sconstruct", line 38:
    from scons.distrib import package, gpg_sign
  File "/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_relax/relax/work/relax-4.0.3/scons/distrib.py", line 34:
    from version import version
  File "/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_relax/relax/work/relax-4.0.3/version.py", line 33:
    import lib.structure.internal.object
  File "/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_relax/relax/work/relax-4.0.3/lib/structure/internal/object.py", line 44:
    from lib.structure.internal.displacements import Displacements
  File "/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_relax/relax/work/relax-4.0.3/lib/structure/internal/displacements.py", line 27:
    from lib.structure.internal.models import ModelContainer
  File "/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_relax/relax/work/relax-4.0.3/lib/structure/internal/models.py", line 30:
    from lib.structure.internal.molecules import MolList
  File "/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_relax/relax/work/relax-4.0.3/lib/structure/internal/molecules.py", line 35:
    from lib.xml import fill_object_contents, xml_to_object
  File "/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_relax/relax/work/relax-4.0.3/lib/xml.py", line 31:
    set_printoptions(precision=15, threshold=nan)
  File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/arrayprint.py", line 246:
    floatmode, legacy)
  File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/arrayprint.py", line 93:
    raise ValueError("threshold must be numeric and non-NAN, try "
Command failed:  cd "/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_relax/relax/work/relax-4.0.3" && /opt/local/bin/scons -j8 
Exit code: 2

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