Opened 2 years ago
Last modified 2 years ago
#69403 assigned defect
superlu_dist @ 8.2.1_0+gcc10+openblas+openmpi : Undefined symbols
| Reported by: | lazersos (Samuel Lazerson) | Owned by: | MarcusCalhoun-Lopez (Marcus Calhoun-Lopez) |
|---|---|---|---|
| Priority: | Normal | Milestone: | |
| Component: | ports | Version: | 2.9.1 |
| Keywords: | Cc: | ||
| Port: | superlu_dist |
Description
The superlu_dist port is failing to compile due to a werid MPI issue it appears:
install superlu_dist +gcc10+openblas+openmpi-accelerate ---> Computing dependencies for superlu_dist ---> Fetching archive for superlu_dist ---> Attempting to fetch superlu_dist-8.2.1_0+gcc10+openblas+openmpi.darwin_21.x86_64.tbz2 from https://cph.dk.packages.macports.org/superlu_dist ---> Attempting to fetch superlu_dist-8.2.1_0+gcc10+openblas+openmpi.darwin_21.x86_64.tbz2 from https://nue.de.packages.macports.org/superlu_dist ---> Attempting to fetch superlu_dist-8.2.1_0+gcc10+openblas+openmpi.darwin_21.x86_64.tbz2 from https://fra.de.packages.macports.org/superlu_dist ---> Fetching distfiles for superlu_dist ---> Verifying checksums for superlu_dist ---> Extracting superlu_dist ---> Configuring superlu_dist Error: Failed to configure superlu_dist: consult /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_superlu_dist/superlu_dist/work/build/CMakeFiles/CMakeError.log Error: Failed to configure superlu_dist: configure failure: command execution failed Error: See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_superlu_dist/superlu_dist/main.log for details. Error: Follow https://guide.macports.org/#project.tickets if you believe there is a bug. Error: Processing of port superlu_dist failed
The actual error in the log file is:
Run Build Command(s):/usr/bin/make -f Makefile cmTC_7da32/fast && /Library/Developer/CommandLineTools/usr/bin/make -f CMakeFiles/cmTC_7da32.dir/build.make CMakeFiles/cmTC_7da32.dir/build
Building CXX object CMakeFiles/cmTC_7da32.dir/test_mpi.cpp.o
/opt/local/bin/mpicxx-openmpi-gcc10 -pipe -Os -DNDEBUG -I/opt/local/include -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -mmacosx-version-min=12.0 -std=gnu++11 -o CMakeFiles/cmTC_7da32.dir/test_mpi.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_superlu_dist/superlu_dist/work/build/CMakeFiles/FindMPI/test_mpi.cpp
Linking CXX executable cmTC_7da32
/opt/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_7da32.dir/link.txt --verbose=1
/opt/local/bin/mpicxx-openmpi-gcc10 -pipe -Os -DNDEBUG -I/opt/local/include -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -mmacosx-version-min=12.0 -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/opt/local/lib -Wl,-headerpad_max_install_names -stdlib=libc++ -Wl,-rpath,/opt/local/lib/libgcc -Wl,-syslibroot,/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -L/opt/local/lib CMakeFiles/cmTC_7da32.dir/test_mpi.cpp.o -o cmTC_7da32 /opt/local/lib/openmpi-gcc10/libmpi_cxx.dylib /opt/local/lib/openmpi-gcc10/libmpi.dylib
Undefined symbols for architecture x86_64:
"__ZNSt8ios_base4InitC1Ev", referenced from:
__GLOBAL__sub_I_test_mpi.cpp in test_mpi.cpp.o
"__ZNSt8ios_base4InitD1Ev", referenced from:
__GLOBAL__sub_I_test_mpi.cpp in test_mpi.cpp.o
ld: symbol(s) not found for architecture x86_64
collect2: error: ld returned 1 exit status
make[1]: *** [cmTC_7da32] Error 1
make: *** [cmTC_7da32/fast] Error 2
Change History (1)
comment:1 Changed 2 years ago by jmroot (Joshua Root)
| Keywords: | superlu_dist mpi removed |
|---|---|
| Owner: | set to MarcusCalhoun-Lopez |
| Status: | new → assigned |
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