Opened 6 years ago

Closed 6 years ago

Last modified 6 years ago

#47461 closed defect (invalid)

Shogun installation failed

Reported by: mariano.avino@… Owned by: macports-tickets@…
Priority: Normal Milestone:
Component: ports Version: 2.3.3
Keywords: Cc:
Port: shogun

Description

Hi there. I am quite new in computer science. I am trying to instal shogun on Mac. I have tried in two ways and both failed. In the first one I did it from Source but when I configure it it fails telling that: Checking for SWIG ... 3.0.5 ... too old version 1.3.29 or later required

Error: swig outdated

Then I tried to install it through: sudo port install shogun and the attached file saying that it failed again.

Could you please help me. Thanks a lot in advance.

Attachments (2)

main.log (56.0 KB) - added by mariano.avino@… 6 years ago.
main 07.48.04.log (56.0 KB) - added by mariano.avino@… 6 years ago.

Download all attachments as: .zip

Change History (12)

Changed 6 years ago by mariano.avino@…

Attachment: main.log added

comment:1 Changed 6 years ago by mf2k (Frank Schima)

Milestone: MacPorts Future
Priority: HighNormal

The Priority and Milestone fields are for use by Macports team members only.

comment:2 Changed 6 years ago by mariano.avino@…

Sorry about that The Priority and Milestone's misusage.

comment:3 Changed 6 years ago by mf2k (Frank Schima)

Keywords: shogun removed
Port: shogun added
Resolution: invalid
Status: newclosed

Thanks. Also next time please fill in the Port field and Cc the port maintainers (port info --maintainers shogun), if any.

The log says it all:

:info:configure Checking for C Compiler ...
:info:configure Error: no C compiler detected - cannot do anything

You do not have the Xcode command line tools installed. Do that and then clean the port and try again.

comment:4 in reply to:  3 Changed 6 years ago by mariano.avino@…

Thanks for the help. Sorry if I did not fill in the Port filed and Cc the port maintainers. I installed the Xcode command line tools and cleaned the port. I installed again MacPorts and then I ran these commands again: sudo port selfupdate

sudo port install swig -php5 -ruby -perl +python +octave +r

sudo port install shogun

Unfortunately the process of installing shogun still fails. I got this log file now:

version:1 :debug:main epoch: in tree: 0 installed: 0 :debug:main pkgconfig 0.28_0 exists in the ports tree :debug:main pkgconfig 0.28_0 is the latest installed :debug:main pkgconfig 0.28_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/pkgconfig :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! pkgconfig 0.28_0 >= pkgconfig 0.28_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main libiconv 1.14_0 exists in the ports tree :debug:main libiconv 1.14_0 is the latest installed :debug:main libiconv 1.14_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0 :debug:main epoch: in tree: 2 installed: 2 :debug:main gcc48 4.8.4_0 exists in the ports tree :debug:main gcc48 4.8.4_0 is the latest installed :debug:main gcc48 4.8.4_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/gcc48 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl :debug:main compiler llvm-gcc-4.2 blacklisted because it's not installed or it doesn't work :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! gcc48 4.8.4_0 >= gcc48 4.8.4_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main cctools 862_1 exists in the ports tree :debug:main cctools 862_1 +llvm35 is the latest installed :debug:main cctools 862_1 +llvm35 is active :debug:main Merging existing variants '+llvm35' into variants :debug:main new fully merged portvariants: llvm35 + :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cctools :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Executing variant llvm35 provides llvm35 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! cctools 862_1 >= cctools 862_1 :debug:main epoch: in tree: 1 installed: 1 :debug:main llvm-3.5 3.5.1_3 exists in the ports tree :debug:main llvm-3.5 3.5.1_3 is the latest installed :debug:main llvm-3.5 3.5.1_3 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/llvm-3.5 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl :debug:main compiler clang 600.0.57 not blacklisted because it doesn't match {clang < 425.0.24} :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! llvm-3.5 3.5.1_3 >= llvm-3.5 3.5.1_3 :debug:main epoch: in tree: 20090923 installed: 20090923 :debug:main libedit 20140620-3.1_0 exists in the ports tree :debug:main libedit 20140620-3.1_0 is the latest installed :debug:main libedit 20140620-3.1_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libedit :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libedit 20140620-3.1_0 >= libedit 20140620-3.1_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main ncurses 5.9_2 exists in the ports tree :debug:main ncurses 5.9_2 is the latest installed :debug:main ncurses 5.9_2 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! ncurses 5.9_2 >= ncurses 5.9_2 :debug:main epoch: in tree: 0 installed: 0 :debug:main libffi 3.2.1_0 exists in the ports tree :debug:main libffi 3.2.1_0 is the latest installed :debug:main libffi 3.2.1_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libffi :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libffi 3.2.1_0 >= libffi 3.2.1_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main zlib 1.2.8_0 exists in the ports tree :debug:main zlib 1.2.8_0 is the latest installed :debug:main zlib 1.2.8_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup xcodeversion 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! zlib 1.2.8_0 >= zlib 1.2.8_0 :debug:main epoch: in tree: 1 installed: 1 :debug:main libcxx 3.6.0_0 exists in the ports tree :debug:main libcxx 3.6.0_0 is the latest installed :debug:main libcxx 3.6.0_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/libcxx :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libcxx 3.6.0_0 >= libcxx 3.6.0_0 :debug:main Found Dependency: path: /usr/bin filename: perl regex: perl$ :debug:main perl5 is *not* installed by MacPorts :debug:main Searching for dependency: perl5 :debug:main Didn't find receipt, going to depspec regex for: perl5 :debug:main Found Dependency: path: /usr/bin filename: perl regex: perl$ :debug:main perl5 not installed, soft dependency satisfied :debug:main epoch: in tree: 0 installed: 0 :debug:main llvm_select 1.0_0 exists in the ports tree :debug:main llvm_select 1.0_0 is the latest installed :debug:main llvm_select 1.0_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/llvm_select :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl :debug:main universal_variant is false, so not adding the default universal variant :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! llvm_select 1.0_0 >= llvm_select 1.0_0 :debug:main epoch: in tree: 1 installed: 1 :debug:main cloog 0.18.2_2 exists in the ports tree :debug:main cloog 0.18.2_2 is the latest installed :debug:main cloog 0.18.2_2 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cloog :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! cloog 0.18.2_2 >= cloog 0.18.2_2 :debug:main epoch: in tree: 0 installed: 0 :debug:main gmp 6.0.0_1 exists in the ports tree :debug:main gmp 6.0.0_1 is the latest installed :debug:main gmp 6.0.0_1 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gmp :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! gmp 6.0.0_1 >= gmp 6.0.0_1 :debug:main epoch: in tree: 2 installed: 2 :debug:main isl 0.14_2 exists in the ports tree :debug:main isl 0.14_2 is the latest installed :debug:main isl 0.14_2 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/isl :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! isl 0.14_2 >= isl 0.14_2 :debug:main epoch: in tree: 2 installed: 2 :debug:main ld64 2_0 exists in the ports tree :debug:main ld64 2_0 is the latest installed :debug:main ld64 2_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ld64 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! ld64 2_0 >= ld64 2_0 :debug:main epoch: in tree: 2 installed: 2 :debug:main ld64-latest 236.3_1 exists in the ports tree :debug:main ld64-latest 236.3_1 +llvm35 is the latest installed :debug:main ld64-latest 236.3_1 +llvm35 is active :debug:main Merging existing variants '+llvm35' into variants :debug:main new fully merged portvariants: llvm35 + :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ld64 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl :debug:main compiler clang 600.0.57 not blacklisted because it doesn't match {clang < 100} :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Executing variant llvm35 provides llvm35 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! ld64-latest 236.3_1 >= ld64-latest 236.3_1 :debug:main epoch: in tree: 2 installed: 2 :debug:main libgcc 4.9.2_1 exists in the ports tree :debug:main libgcc 4.9.2_1 is the latest installed :debug:main libgcc 4.9.2_1 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/gcc49 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl :debug:main compiler llvm-gcc-4.2 blacklisted because it's not installed or it doesn't work :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libgcc 4.9.2_1 >= libgcc 4.9.2_1 :debug:main epoch: in tree: 0 installed: 0 :debug:main libmpc 1.0.3_0 exists in the ports tree :debug:main libmpc 1.0.3_0 is the latest installed :debug:main libmpc 1.0.3_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libmpc :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libmpc 1.0.3_0 >= libmpc 1.0.3_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main mpfr 3.1.2-p10_3 exists in the ports tree :debug:main mpfr 3.1.2-p10_3 is the latest installed :debug:main mpfr 3.1.2-p10_3 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/mpfr :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl :debug:main compiler clang 600.0.57 not blacklisted because it doesn't match {clang == 211.10.1} :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! mpfr 3.1.2-p10_3 >= mpfr 3.1.2-p10_3 :debug:main epoch: in tree: 0 installed: 0 :debug:main gcc_select 0.1_8 exists in the ports tree :debug:main gcc_select 0.1_8 is the latest installed :debug:main gcc_select 0.1_8 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/gcc_select :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl :debug:main universal_variant is false, so not adding the default universal variant :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! gcc_select 0.1_8 >= gcc_select 0.1_8 :debug:main epoch: in tree: 0 installed: 0 :debug:main hdf5 1.8.14_0 exists in the ports tree :debug:main hdf5 1.8.14_0 +cxx is the latest installed :debug:main hdf5 1.8.14_0 +cxx is active :debug:main Merging existing variants '+cxx' into variants :debug:main new fully merged portvariants: cxx + :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/hdf5 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup conflicts_build 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/conflicts_build-1.0.tcl :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl :debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl :debug:main Sourcing PortGroup mpi 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Executing variant cxx provides cxx :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! hdf5 1.8.14_0 >= hdf5 1.8.14_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main json-c 0.12-20140410_0 exists in the ports tree :debug:main json-c 0.12-20140410_0 is the latest installed :debug:main json-c 0.12-20140410_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/json-c :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup github 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/github-1.0.tcl :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! json-c 0.12-20140410_0 >= json-c 0.12-20140410_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main libxml2 2.9.2_2 exists in the ports tree :debug:main libxml2 2.9.2_2 is the latest installed :debug:main libxml2 2.9.2_2 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libxml2 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libxml2 2.9.2_2 >= libxml2 2.9.2_2 :debug:main epoch: in tree: 0 installed: 0 :debug:main xz 5.2.1_0 exists in the ports tree :debug:main xz 5.2.1_0 is the latest installed :debug:main xz 5.2.1_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/xz :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! xz 5.2.1_0 >= xz 5.2.1_0 :debug:main epoch: in tree: 2 installed: 2 :debug:main gettext 0.19.4_0 exists in the ports tree :debug:main gettext 0.19.4_0 is the latest installed :debug:main gettext 0.19.4_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main compiler clang 600.0.57 not blacklisted because it doesn't match {clang < 211.10.1} :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! gettext 0.19.4_0 >= gettext 0.19.4_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main expat 2.1.0_0 exists in the ports tree :debug:main expat 2.1.0_0 is the latest installed :debug:main expat 2.1.0_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main readline 6.3.003_0 exists in the ports tree :debug:main readline 6.3.003_0 is the latest installed :debug:main readline 6.3.003_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/readline :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! readline 6.3.003_0 >= readline 6.3.003_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main atlas 3.10.2_1 exists in the ports tree :debug:main atlas 3.10.2_1 +gcc48 is the latest installed :debug:main atlas 3.10.2_1 +gcc48 is active :debug:main Merging existing variants '+gcc48' into variants :debug:main new fully merged portvariants: gcc48 + :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/atlas :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Executing variant gcc48 provides gcc48 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Chosen compiler macports-gcc-4.8 is provided by a port, adding dependency :debug:main Adding depends_lib port:gcc48 :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! atlas 3.10.2_1 >= atlas 3.10.2_1 :debug:main epoch: in tree: 0 installed: 0 :debug:main arpack 3.1.5_0 exists in the ports tree :debug:main arpack 3.1.5_0 +accelerate+gfortran is the latest installed :debug:main arpack 3.1.5_0 +accelerate+gfortran is active :debug:main Merging existing variants '+accelerate+gfortran' into variants :debug:main new fully merged portvariants: accelerate + gfortran + :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/arpack :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl :debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl :debug:main Sourcing PortGroup mpi 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Executing variant gfortran provides gfortran :debug:main Executing variant accelerate provides accelerate :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! arpack 3.1.5_0 >= arpack 3.1.5_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main eigen3 3.2.4_0 exists in the ports tree :debug:main eigen3 3.2.4_0 is the latest installed :debug:main eigen3 3.2.4_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/eigen3 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl :debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl :debug:main Re-registering default for configure.dir :debug:main Re-registering default for build.dir :debug:main Sourcing PortGroup cmake 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/cmake-1.0.tcl :debug:main only one arch supported, so not adding the default universal variant :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! eigen3 3.2.4_0 >= eigen3 3.2.4_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main lp_solve 5.5.2.0_0 exists in the ports tree :debug:main lp_solve 5.5.2.0_0 is the latest installed :debug:main lp_solve 5.5.2.0_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/lp_solve :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! lp_solve 5.5.2.0_0 >= lp_solve 5.5.2.0_0 :debug:main epoch: in tree: 1 installed: 1 :debug:main glpk 4.48_0 exists in the ports tree :debug:main glpk 4.48_0 is the latest installed :debug:main glpk 4.48_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/glpk :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Sourcing PortGroup archcheck 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/archcheck-1.0.tcl :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! glpk 4.48_0 >= glpk 4.48_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main lzo2 2.09_0 exists in the ports tree :debug:main lzo2 2.09_0 is the latest installed :debug:main lzo2 2.09_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/lzo2 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! lzo2 2.09_0 >= lzo2 2.09_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main snappy 1.1.1_0 exists in the ports tree :debug:main snappy 1.1.1_0 is the latest installed :debug:main snappy 1.1.1_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/snappy :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! snappy 1.1.1_0 >= snappy 1.1.1_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main gzip 1.6_0 exists in the ports tree :debug:main gzip 1.6_0 is the latest installed :debug:main gzip 1.6_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/gzip :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! gzip 1.6_0 >= gzip 1.6_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main bzip2 1.0.6_0 exists in the ports tree :debug:main bzip2 1.0.6_0 is the latest installed :debug:main bzip2 1.0.6_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/bzip2 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0 :msg:main ---> Computing dependencies for shogun:info:main .:debug:main Checking for conflicts against shogun :debug:main Searching for dependency: shogun-devel :debug:main Didn't find receipt, going to depspec regex for: shogun-devel :debug:main Searching for dependency: pkgconfig :debug:main Found Dependency: receipt exists for pkgconfig :debug:main Searching for dependency: gcc48 :debug:main Found Dependency: receipt exists for gcc48 :debug:main Searching for dependency: hdf5 :debug:main Found Dependency: receipt exists for hdf5 :debug:main Searching for dependency: json-c :debug:main Found Dependency: receipt exists for json-c :debug:main Searching for dependency: libxml2 :debug:main Found Dependency: receipt exists for libxml2 :debug:main Searching for dependency: readline :debug:main Found Dependency: receipt exists for readline :debug:main Searching for dependency: atlas :debug:main Found Dependency: receipt exists for atlas :debug:main Searching for dependency: arpack :debug:main Found Dependency: receipt exists for arpack :debug:main Searching for dependency: eigen3 :debug:main Found Dependency: receipt exists for eigen3 :debug:main Searching for dependency: lp_solve :debug:main Found Dependency: receipt exists for lp_solve :debug:main Searching for dependency: glpk :debug:main Found Dependency: receipt exists for glpk :debug:main Searching for dependency: lzo2 :debug:main Found Dependency: receipt exists for lzo2 :debug:main Searching for dependency: snappy :debug:main Found Dependency: receipt exists for snappy :debug:main Searching for dependency: gzip :debug:main Found Dependency: receipt exists for gzip :debug:main Searching for dependency: bzip2 :debug:main Found Dependency: receipt exists for bzip2 :debug:main Searching for dependency: xz :debug:main Found Dependency: receipt exists for xz :debug:main Searching for dependency: libgcc :debug:main Found Dependency: receipt exists for libgcc :msg:main :debug:main Executing org.macports.main (shogun) :debug:main changing euid/egid - current euid: 0 - current egid: 0 :debug:main egid changed to: 501 :debug:main euid changed to: 502 :debug:main Skipping completed org.macports.archivefetch (shogun) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.fetch (shogun) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.checksum (shogun) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.extract (shogun) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.patch (shogun) :debug:main Privilege de-escalation not attempted as not running as root. :debug:configure configure phase started at Thu Apr 16 10:32:06 CEST 2015 :notice:configure ---> Configuring shogun :debug:configure Using compiler 'Xcode Clang' :debug:configure Executing org.macports.configure (shogun) :debug:configure Environment: CC='/usr/bin/clang' CC_PRINT_OPTIONS='YES' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/.CC_PRINT_OPTIONS' CFLAGS='-pipe -Os -arch x86_64' CPATH='/opt/local/include' CPPFLAGS='-I/opt/local/include' CXX='/usr/bin/clang++' CXXFLAGS='-pipe -Os -arch x86_64 -stdlib=libc++' F77='/opt/local/bin/gfortran-mp-4.8' F77FLAGS='-m64' F90='/opt/local/bin/gfortran-mp-4.8' F90FLAGS='-pipe -Os -m64' FC='/opt/local/bin/gfortran-mp-4.8' FCFLAGS='-pipe -Os -m64' FFLAGS='-pipe -Os' INSTALL='/usr/bin/install -c' LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.9' OBJC='/usr/bin/clang' OBJCFLAGS='-pipe -Os -arch x86_64' OBJCXX='/usr/bin/clang++' OBJCXXFLAGS='-pipe -Os -arch x86_64 -stdlib=libc++' POSTLINKFLAGS='-L/opt/local/lib/gcc47' :debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/shogun-2.1.0/src" && ./configure --prefix=/opt/local --ldflags=-lgfortran --enable-hdf5 --enable-json --enable-xml --enable-readline --enable-largefile --disable-spinlocks --enable-lapack --enable-arpack --disable-mosek --disable-superlu --disable-nlopt --enable-eigen3 --disable-cplex --enable-lpsolve --enable-glpk --enable-lzo --enable-snappy --enable-gzip --enable-bzip2 --enable-lzma --enable-bigstates --enable-hmmcache --enable-svm-light --disable-logcache --enable-shortrealkernelcache --enable-logsum-array --disable-hmm-parallel --disable-doxygen --enable-optimization --includes=/opt/local/include --libs=/opt/local/lib --destdir=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/destroot --interfaces=cmdline_static --enable-cpudetection' :debug:configure Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/shogun-2.1.0/src" && ./configure --prefix=/opt/local --ldflags=-lgfortran --enable-hdf5 --enable-json --enable-xml --enable-readline --enable-largefile --disable-spinlocks --enable-lapack --enable-arpack --disable-mosek --disable-superlu --disable-nlopt --enable-eigen3 --disable-cplex --enable-lpsolve --enable-glpk --enable-lzo --enable-snappy --enable-gzip --enable-bzip2 --enable-lzma --enable-bigstates --enable-hmmcache --enable-svm-light --disable-logcache --enable-shortrealkernelcache --enable-logsum-array --disable-hmm-parallel --disable-doxygen --enable-optimization --includes=/opt/local/include --libs=/opt/local/lib --destdir=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/destroot --interfaces=cmdline_static --enable-cpudetection :info:configure Running configure for SHOGUN version 2.1.0 :info:configure Checking for C Compiler ... :info:configure Error: no C compiler detected - cannot do anything :info:configure :info:configure Check configure.log if you do not understand why it failed. :info:configure The last 20 lines of configure.log are shown below :info:configure :info:configure :info:configure int main(void) { return 0; } :info:configure :info:configure cc -I/opt/local/include -pipe -Os -arch x86_64 ./configure-18576-954.c -o ./configure-29380-954.o -L/opt/local/lib -lgfortran -L/opt/local/lib/gcc47 :info:configure ld: warning: directory not found for option '-L/opt/local/lib/gcc47' :info:configure ld: warning: directory not found for option '-LLD_LIBRARY_PATH' :info:configure ld: library not found for -lgfortran :info:configure clang: error: linker command failed with exit code 1 (use -v to see invocation) :info:configure no object file created :info:configure :info:configure :info:configure int main(void) { return 0; } :info:configure :info:configure gcc -I/opt/local/include -pipe -Os -arch x86_64 ./configure-18576-954.c -o ./configure-29380-954.o -L/opt/local/lib -lgfortran -L/opt/local/lib/gcc47 :info:configure ld: warning: directory not found for option '-L/opt/local/lib/gcc47' :info:configure ld: warning: directory not found for option '-LLD_LIBRARY_PATH' :info:configure ld: library not found for -lgfortran :info:configure clang: error: linker command failed with exit code 1 (use -v to see invocation) :info:configure no object file created :info:configure :info:configure Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/shogun-2.1.0/src" && ./configure --prefix=/opt/local --ldflags=-lgfortran --enable-hdf5 --enable-json --enable-xml --enable-readline --enable-largefile --disable-spinlocks --enable-lapack --enable-arpack --disable-mosek --disable-superlu --disable-nlopt --enable-eigen3 --disable-cplex --enable-lpsolve --enable-glpk --enable-lzo --enable-snappy --enable-gzip --enable-bzip2 --enable-lzma --enable-bigstates --enable-hmmcache --enable-svm-light --disable-logcache --enable-shortrealkernelcache --enable-logsum-array --disable-hmm-parallel --disable-doxygen --enable-optimization --includes=/opt/local/include --libs=/opt/local/lib --destdir=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/destroot --interfaces=cmdline_static --enable-cpudetection :info:configure Exit code: 1 :error:configure org.macports.configure for port shogun returned: configure failure: command execution failed :debug:configure Error code: NONE :debug:configure Backtrace: configure failure: command execution failed

while executing

"portconfigure::configure_main org.macports.configure"

("eval" body line 1) invoked from within

"eval $procedure $targetname" :info:configure Warning: targets not executed for shogun: org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install :notice:configure Please see the log file for port shogun for details:

/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/main.log

Thanks a lot again. Cheers, Mariano

comment:5 Changed 6 years ago by mf2k (Frank Schima)

In the future, please use WikiFormatting. That is totally unreadable. Please instead attach the new main.log file after running port clean on the port instead of pasting it into a comment unformatted.

Changed 6 years ago by mariano.avino@…

Attachment: main 07.48.04.log added

comment:6 Changed 6 years ago by mariano.avino@…

I have followed your suggestions. I installed the Xcode command line tools and cleaned the port but still my shogun installation is failing and I attached the new log file. Thank you very much.

comment:7 Changed 6 years ago by mf2k (Frank Schima)

Same error as before:

Error: no C compiler detected - cannot do anything

comment:8 Changed 6 years ago by mf2k (Frank Schima)

Also, the log is not a clean log. I suggest verifying that you cleaned the port.

comment:9 Changed 6 years ago by mariano.avino@…

I cleaned the port before installing it again, but maybe I did it wrong. Could you please tell me how you would clean them?

Last edited 6 years ago by mariano.avino@… (previous) (diff)

comment:10 Changed 6 years ago by mf2k (Frank Schima)

sudo port clean shogun
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