Portfile for bowtie2

[gaberoo@…]

Portfile for bowtie2.

Bowtie2 has no dependencies besides XCode.

[ryandesign (Ryan Carsten Schmidt)]

Thanks. Some comments:

• The maintainers line should only include your obfuscated email address, not your name.
• You should use the github portgroup rather than manually specifying the master_sites and distfiles. You'll need to change the checksums too, since with the github portgroup you'll be fetching a tarball URL, not an archive URL.
• Since you're disabling the configure phase, you're responsible for ensuring the build is UsingTheRightCompiler and -arch flags and has a functional universal variant.

[gaberoo@…]

Hi ryandesign.

Thanks for your comments and sorry for the lack of experience.

I've changed the maintainers line and now use the github portgroup.

Also, I've made a small patch that ensure that the MacPorts compiler gets used. I'm not 100% sure about the best practices for dealing with universal variants when the source doesn't use a configure script. But for now, I've disabled the universal variant. Is that acceptable?

[kurthindenburg (Kurt Hindenburg)]

Cc Me!

[kurthindenburg (Kurt Hindenburg)]

Is there any reason to not just update the current bowtie port instead of adding bowtie2?

[gaberoo@…]

Bowtie 1 and 2 are two different releases:

​http://bowtie-bio.sourceforge.net/index.shtml

​http://bowtie-bio.sourceforge.net/bowtie2/index.shtml

That was my logic in adding bowtie2. Perhaps the bowtie port should be updated to the newest version of bowtie 1 though.

[kurthindenburg (Kurt Hindenburg)]

OK, is there any reason to not use 2.2.9?

[gaberoo@…]

Same patch as before

[gaberoo@…]

No reason... here is the new portfile

[gaberoo@…]

Version 2.2.9

[gaberoo@…]

Version 2.2.9

[kurthindenburg (Kurt Hindenburg)]

done r148375 r148376